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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920862
Clone id YMU001_000142_F04
Library
Length 394
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACCTCTAAACTTTTGCTCATTTTTGGAGCAGGTATGCTCCTTTAAGCAAGATTATTCTCA
TTAAAGCATTGAGTAAGCCGTCACGAGGTTCCGAAATTTTTTCGAGCATATACTCCCACT
ACCAACATAGATCCACGTTACCATCATGGAATCATTTCTTAGGGGATTGCATCCTAGTAT
TCAAATTTTAGCGAGGACTTAAGCTCCACAAGATTTAAATACTGCTATCACGTCTGCTAT
TAATGTGGAGACTTCCTACAGGTACGCTTATGAACCACAACTAGTAGCAACTCCATCTCC
ATTGTACTACCCATGGCTAGCACCACACTCTTTATCCATGTCCACTCCTATTTGATATTT
ACCAGCCCCATCTTATTTACCCCAATTATAGTCG
■■Homology search results ■■ -
sp_hit_id Q2S415
Definition sp|Q2S415|SYL_SALRD Leucyl-tRNA synthetase OS=Salinibacter ruber (strain DSM 13855)
Align length 58
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920862|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_F04.
         (394 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2S415|SYL_SALRD Leucyl-tRNA synthetase OS=Salinibacter ruber...    31   1.7  

>sp|Q2S415|SYL_SALRD Leucyl-tRNA synthetase OS=Salinibacter ruber
           (strain DSM 13855) GN=leuS PE=3 SV=1
          Length = 863

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 158 LRGLHPSIQILART*APQDLNTAITSAIN-VETSYRYAYEPQLVATPSPLYYPWLAPH 328
           LR LH +I+ +      +D NTAI + +  V  + ++   P+ VATP  L     APH
Sbjct: 713 LRTLHRTIKTVTEDIEARDFNTAIAAMMEFVNAANKWDALPRQVATPFVLLLSPFAPH 770
tr_hit_id A8PAX6
Definition tr|A8PAX6|A8PAX6_BRUMA SAC3/GANP family protein OS=Brugia malayi
Align length 50
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920862|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_F04.
         (394 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8PAX6|A8PAX6_BRUMA SAC3/GANP family protein OS=Brugia malayi...    34   4.1  
tr|A8J1C7|A8J1C7_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   5.4  
tr|A2DHG0|A2DHG0_TRIVA AT hook motif family protein OS=Trichomon...    33   7.1  
tr|A3Z121|A3Z121_9SYNE Putative uncharacterized protein OS=Synec...    33   7.1  
tr|A8IN13|A8IN13_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   9.2  

>tr|A8PAX6|A8PAX6_BRUMA SAC3/GANP family protein OS=Brugia malayi
           GN=Bm1_20850 PE=4 SV=1
          Length = 705

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +2

Query: 221 TAITSAINVETSYRYAYEPQLVATPSPLYYPWLAPHSLSMSTPI*YLPAP 370
           T+ +S I+  TSY    +P  + +    YYPW+  HSL MS  +  LP P
Sbjct: 72  TSTSSNISSMTSYHSQTQPD-IHSQIMHYYPWMEQHSLGMSPFLPRLPPP 120


>tr|A8J1C7|A8J1C7_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_191910 PE=4 SV=1
          Length = 195

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 140 TIMESFLRGLHPSIQILART*APQDLNTAITSAINV 247
           T M SFLRGLHP +        P +L+ AIT+AI V
Sbjct: 129 TYMYSFLRGLHPDVYQQVYLMRPANLDDAITNAIYV 164


>tr|A2DHG0|A2DHG0_TRIVA AT hook motif family protein OS=Trichomonas
            vaginalis G3 GN=TVAG_021800 PE=4 SV=1
          Length = 1755

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 275  PQLVATPSPLYYPWLAPHSLSMSTPI*YLPAPSYLP 382
            PQ+   P P + P +AP+++ +  P  +LP P  LP
Sbjct: 1654 PQIAQLPPPPFLPQIAPNNMQVPIPPRFLPVPQPLP 1689


>tr|A3Z121|A3Z121_9SYNE Putative uncharacterized protein
           OS=Synechococcus sp. WH 5701 GN=WH5701_12488 PE=4 SV=1
          Length = 444

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 66  ALSKPSRGSEIFSSIYSHYQHRSTLPSWNHFL 161
           A S+   G E + S Y+  +HRS LPSWN +L
Sbjct: 115 ACSQVRIGLEDYRSAYAEMEHRSALPSWNPWL 146


>tr|A8IN13|A8IN13_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_144905 PE=4
           SV=1
          Length = 366

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 140 TIMESFLRGLHPSIQILART*APQDLNTAITSAINV 247
           T M +FLRGLHP I        P +L+ AIT+AI V
Sbjct: 69  TYMYNFLRGLHPDIYQQVYLMRPANLDDAITNAIYV 104