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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920865
Clone id YMU001_000142_F07
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGCTGCAGGCCCCCCATCTCAATGATTCTTTGCTGACATCCTTTGTCCTCTGTTGACAG
TTCTATTAAAGCCTTCATAGCCTTCAGGGTACTTTCCACAGTATTTGCGGGAGTAAGCCT
CCCCTTGTCTTTCTTAGTCACTTTCCCAACGATGTTAAAGAGAAGCAATCTATTGAGATC
TCCCCAGTCCGACTCAGGGAGATCAGAGGCCCCTTTTTCTACAGCAGATCCTTGGATCTC
TCCAATAGACAAAAAAACTGCTTTCGCAAGCTCATTGGCTGCTTGTAAGGCCAGCTGACT
TGATTGCCCCTGAATAAGAGCTTTCGATTTGGCACTCTTAGAAACCTGAGCATCCCCCCG
TGCCGGGTCAGTAACATAACCATTCACTGTTCCCAGAATAACCATGGCTAGCCAGGCTTG
AGAAAGAGATATACCAGTAGGACCCAGTTCATCAAGCACATGGGCAAGAATTTTCGACGC
TGTAAGACGAGCTGAATCGTCTAATTTGGAATTGAAAAGCCAACCAAGTAAAATGCTAGA
CCATTTCTTTCCCTCTTCAGATGATAAACCTGAACCACGGATACTCAGCAATT
■■Homology search results ■■ -
sp_hit_id Q3KG77
Definition sp|Q3KG77|ISPZ_PSEPF Probable intracellular septation protein OS=Pseudomonas fluorescens (strain Pf0-1)
Align length 68
Score (bit) 30.4
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920865|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_F07.
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3KG77|ISPZ_PSEPF Probable intracellular septation protein OS...    30   7.0  
sp|Q4KGB1|ISPZ_PSEF5 Probable intracellular septation protein OS...    30   7.0  
sp|O79411|NU5M_SCYCA NADH-ubiquinone oxidoreductase chain 5 OS=S...    30   9.1  

>sp|Q3KG77|ISPZ_PSEPF Probable intracellular septation protein
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=ispZ PE=3
           SV=1
          Length = 198

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -3

Query: 561 SEEGKKWSSILLGWLFNSKLDDSA----RLTASKILAHVLDELGPTGISLSQAWLAMVIL 394
           SE   KW + ++ WLF      S     RL   +I+ H L    P    L+ AW+A  + 
Sbjct: 84  SETFLKWKAPVVNWLFALAFIGSHFIGDRLLIKRIMGHALTLPDPVWTRLNIAWIAFFLF 143

Query: 393 -GTVNGYV 373
            G  N +V
Sbjct: 144 CGAANLFV 151


>sp|Q4KGB1|ISPZ_PSEF5 Probable intracellular septation protein
           OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
           GN=ispZ PE=3 SV=1
          Length = 198

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = -3

Query: 561 SEEGKKWSSILLGWLFNSKLDDSA----RLTASKILAHVLDELGPTGISLSQAWLAMVIL 394
           SE   KW + ++ WLF      S     RL   +I+ H L    P    L+ AW+A  + 
Sbjct: 84  SETFLKWKAPVVNWLFALAFIGSHFVGDRLLIKRIMGHALTLPDPVWTRLNIAWIAFFLF 143

Query: 393 -GTVNGYV 373
            G  N +V
Sbjct: 144 CGAANLFV 151


>sp|O79411|NU5M_SCYCA NADH-ubiquinone oxidoreductase chain 5
           OS=Scyliorhinus canicula GN=MT-ND5 PE=3 SV=1
          Length = 609

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 540 SSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAWLAM 403
           S +L+GW ++    ++A L A      + + +G  G+ LS AWLAM
Sbjct: 153 SFLLIGWWYSRTDANTAALQAV-----IYNRIGDIGLILSMAWLAM 193
tr_hit_id A9RSR4
Definition tr|A9RSR4|A9RSR4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 202
Score (bit) 91.7
E-value 3.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920865|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_F07.
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RSR4|A9RSR4_PHYPA Predicted protein OS=Physcomitrella paten...    92   3e-17
tr|Q10QS2|Q10QS2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    89   2e-16
tr|A3AEW4|A3AEW4_ORYSJ Putative uncharacterized protein OS=Oryza...    89   2e-16
tr|A2XDB1|A2XDB1_ORYSI Putative uncharacterized protein OS=Oryza...    89   2e-16
tr|Q9SYZ6|Q9SYZ6_ARATH Putative uncharacterized protein AT4g3431...    76   2e-12
tr|Q3E9R7|Q3E9R7_ARATH Uncharacterized protein At4g34310.2 OS=Ar...    76   2e-12
tr|A7NTR5|A7NTR5_VITVI Chromosome chr18 scaffold_1, whole genome...    75   4e-12
tr|A5C9Q6|A5C9Q6_VITVI Putative uncharacterized protein OS=Vitis...    48   4e-04
tr|Q608B8|Q608B8_METCA ATP-dependent RNA helicase, DEAD/DEAH box...    36   1.9  
tr|A8PCK5|A8PCK5_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.5  
tr|A7ASR0|A7ASR0_BABBO Variant erythrocyte surface antigen-1, be...    35   3.2  

>tr|A9RSR4|A9RSR4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_160793 PE=4 SV=1
          Length = 1424

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 67/202 (33%), Positives = 99/202 (49%), Gaps = 5/202 (2%)
 Frame = -3

Query: 591  LLSIRGSGLSSEEGKKWSSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAW 412
            +L+   SGLS +E KKWS ILL W+   K D  AR    +IL  V++ LG  GI +SQAW
Sbjct: 751  VLTSSRSGLSVDESKKWSPILLRWVCTYKPDSLARSCGCRILNRVVNSLGQDGIPISQAW 810

Query: 411  LAMVILGTVNGYVTDPARGDAQVSKSAKSKXXXXXXXXXXXXXXXXXXXXAV-----FLS 247
            LAM+++  VN   + P  G A+ +   ++K                     V       +
Sbjct: 811  LAMLLMNIVN--ESKPKLGKAKGASIVEAKERLLSQLVVQAAAAAGDIAKVVAREAEASA 868

Query: 246  IGEIQGSAVEKGASDLPESDWGDLNRLLLFNIVGKVTKKDKGRLTPANTVESTLKAMKAL 67
              E+    V + A +LP      +    L  + G+ TK+   ++T       TLKA+KAL
Sbjct: 869  ATELSVKGVAESARELP------MVGFFLSPVAGQ-TKESPRKVTAREAASCTLKALKAL 921

Query: 66   IELSTEDKGCQQRIIEMGGLQL 1
             EL  ED+G ++R++E GGL L
Sbjct: 922  TELIAEDQGGRRRVLEAGGLCL 943


>tr|Q10QS2|Q10QS2_ORYSJ Expressed protein OS=Oryza sativa subsp.
            japonica GN=LOC_Os03g08700 PE=4 SV=1
          Length = 1193

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 57/189 (30%), Positives = 89/189 (47%)
 Frame = -3

Query: 567  LSSEEGKKWSSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAWLAMVILGT 388
            LS EE ++WS ILL WLF+  + ++  LTA KIL+ +L++ GP  + +SQ WLA+V+   
Sbjct: 539  LSLEETQRWSGILLRWLFDKSVSETTNLTAIKILSCILEDYGPASVPISQGWLALVLSEI 598

Query: 387  VNGYVTDPARGDAQVSKSAKSKXXXXXXXXXXXXXXXXXXXXAVFLSIGEIQGSAVEKGA 208
            +    T   +G  Q                             V L+I  +Q        
Sbjct: 599  LGDNKTQNLKGTTQPQPERVKNQVDHHNASSATQILNQLATAVVKLAI--VQSHYDPASG 656

Query: 207  SDLPESDWGDLNRLLLFNIVGKVTKKDKGRLTPANTVESTLKAMKALIELSTEDKGCQQR 28
              +P  D+  L        +  + KK+  +   A++  +TLK +KAL EL +ED  CQ+R
Sbjct: 657  DKVPLFDFLSLEPFA--TALKNLNKKNPPKFDAADSASATLKGIKALAELCSEDGACQKR 714

Query: 27   IIEMGGLQL 1
            I ++G L L
Sbjct: 715  IADLGVLSL 723


>tr|A3AEW4|A3AEW4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009336 PE=4 SV=1
          Length = 943

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 57/189 (30%), Positives = 89/189 (47%)
 Frame = -3

Query: 567 LSSEEGKKWSSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAWLAMVILGT 388
           LS EE ++WS ILL WLF+  + ++  LTA KIL+ +L++ GP  + +SQ WLA+V+   
Sbjct: 289 LSLEETQRWSGILLRWLFDKSVSETTNLTAIKILSCILEDYGPASVPISQGWLALVLSEI 348

Query: 387 VNGYVTDPARGDAQVSKSAKSKXXXXXXXXXXXXXXXXXXXXAVFLSIGEIQGSAVEKGA 208
           +    T   +G  Q                             V L+I  +Q        
Sbjct: 349 LGDNKTQNLKGTTQPQPERVKNQVDHHNASSATQILNQLATAVVKLAI--VQSHYDPASG 406

Query: 207 SDLPESDWGDLNRLLLFNIVGKVTKKDKGRLTPANTVESTLKAMKALIELSTEDKGCQQR 28
             +P  D+  L        +  + KK+  +   A++  +TLK +KAL EL +ED  CQ+R
Sbjct: 407 DKVPLFDFLSLEPFA--TALKNLNKKNPPKFDAADSASATLKGIKALAELCSEDGACQKR 464

Query: 27  IIEMGGLQL 1
           I ++G L L
Sbjct: 465 IADLGVLSL 473


>tr|A2XDB1|A2XDB1_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_10294 PE=4 SV=1
          Length = 1193

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 57/189 (30%), Positives = 89/189 (47%)
 Frame = -3

Query: 567  LSSEEGKKWSSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAWLAMVILGT 388
            LS EE ++WS ILL WLF+  + ++  LTA KIL+ +L++ GP  + +SQ WLA+V+   
Sbjct: 539  LSLEETQRWSGILLRWLFDKSVSETTNLTAIKILSCILEDYGPASVPISQGWLALVLSEI 598

Query: 387  VNGYVTDPARGDAQVSKSAKSKXXXXXXXXXXXXXXXXXXXXAVFLSIGEIQGSAVEKGA 208
            +    T   +G  Q                             V L+I  +Q        
Sbjct: 599  LGDNKTQNLKGTTQPQPERVKNQVDHHNASSATQILNQLATAVVKLAI--VQSHYDPASG 656

Query: 207  SDLPESDWGDLNRLLLFNIVGKVTKKDKGRLTPANTVESTLKAMKALIELSTEDKGCQQR 28
              +P  D+  L        +  + KK+  +   A++  +TLK +KAL EL +ED  CQ+R
Sbjct: 657  DKVPLFDFLSLEPFA--TALKNLNKKNPPKFDAADSASATLKGIKALAELCSEDGACQKR 714

Query: 27   IIEMGGLQL 1
            I ++G L L
Sbjct: 715  IADLGVLSL 723


>tr|Q9SYZ6|Q9SYZ6_ARATH Putative uncharacterized protein AT4g34310
            OS=Arabidopsis thaliana GN=AT4g34310 PE=2 SV=1
          Length = 1074

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 4/193 (2%)
 Frame = -3

Query: 567  LSSEEGKKWSSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAWLAMVILGT 388
            LS EE +KWS ILL W+      D+ + +A +IL+   ++ GP  + +SQ WL +++   
Sbjct: 556  LSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEI 615

Query: 387  VNGYVTDPARGDAQVSKSAKSKXXXXXXXXXXXXXXXXXXXXAVFLSIGEIQGSAVEKGA 208
            +N   T  A+G A + K+ K K                       +++   Q   V +  
Sbjct: 616  LNHSKTVSAKG-ASLPKNEKPK---VDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESV 671

Query: 207  SDLPESDWGDLNRLLL---FNIVGKVTKKDK-GRLTPANTVESTLKAMKALIELSTEDKG 40
            +++P +D      LLL   F +  K  KKD   +   A +  +T+KA+K+L ++  ED  
Sbjct: 672  NNVPLAD------LLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSV 725

Query: 39   CQQRIIEMGGLQL 1
            CQ +I++ G L L
Sbjct: 726  CQNKIVDFGILCL 738


>tr|Q3E9R7|Q3E9R7_ARATH Uncharacterized protein At4g34310.2
            OS=Arabidopsis thaliana GN=At4g34310 PE=4 SV=1
          Length = 1035

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 4/193 (2%)
 Frame = -3

Query: 567  LSSEEGKKWSSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAWLAMVILGT 388
            LS EE +KWS ILL W+      D+ + +A +IL+   ++ GP  + +SQ WL +++   
Sbjct: 556  LSLEESQKWSGILLSWVLGKVASDTVQSSARRILSRTFEDYGPHSVPISQGWLTLIMNEI 615

Query: 387  VNGYVTDPARGDAQVSKSAKSKXXXXXXXXXXXXXXXXXXXXAVFLSIGEIQGSAVEKGA 208
            +N   T  A+G A + K+ K K                       +++   Q   V +  
Sbjct: 616  LNHSKTVSAKG-ASLPKNEKPK---VDQSKVTSATQSTNLLAVAVVNLAMAQLGTVPESV 671

Query: 207  SDLPESDWGDLNRLLL---FNIVGKVTKKDK-GRLTPANTVESTLKAMKALIELSTEDKG 40
            +++P +D      LLL   F +  K  KKD   +   A +  +T+KA+K+L ++  ED  
Sbjct: 672  NNVPLAD------LLLSEPFAVPIKNLKKDSPPKFNAAESALATIKAIKSLTDVCAEDSV 725

Query: 39   CQQRIIEMGGLQL 1
            CQ +I++ G L L
Sbjct: 726  CQNKIVDFGILCL 738


>tr|A7NTR5|A7NTR5_VITVI Chromosome chr18 scaffold_1, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00014767001
            PE=4 SV=1
          Length = 1209

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 3/192 (1%)
 Frame = -3

Query: 567  LSSEEGKKWSSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAWLAMVILGT 388
            LS EE + WS IL+ W+F     D+ R +A+KIL+ +L++ GP+ + +SQ WLAM++   
Sbjct: 548  LSFEESQMWSGILIPWVFGKSSSDTMRSSATKILSCILEDYGPSALPVSQGWLAMLLTEI 607

Query: 387  VNGYVTDPARGDAQVSKSAKSKXXXXXXXXXXXXXXXXXXXXAVFLSIGEIQGSAVEKGA 208
            +  +     +   + S   KS                        + +   Q   +    
Sbjct: 608  LGSH-----KQSVKGSAPPKSDKTQIDQANILSATQTANQLVGAVVDLAGNQLRTINNSV 662

Query: 207  SDLPESDWGDLNRLLLFNIVGK---VTKKDKGRLTPANTVESTLKAMKALIELSTEDKGC 37
               P SD      L L   VG+   + K +  +L  A++  +TLK +KAL E+   D  C
Sbjct: 663  DTFPLSD-----LLSLEPFVGRFKNLNKDNLPKLDAADSALATLKGIKALTEICAGDSEC 717

Query: 36   QQRIIEMGGLQL 1
            Q  I++ G L L
Sbjct: 718  QNEIVDFGVLCL 729


>tr|A5C9Q6|A5C9Q6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008806 PE=4 SV=1
          Length = 893

 Score = 48.1 bits (113), Expect = 4e-04
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 3/162 (1%)
 Frame = -3

Query: 477 SKILAHVLDELGPTGISLSQAWLAMVILGTVNGYVTDPARGDAQVSKSAKSKXXXXXXXX 298
           +KIL+ +L++ GP+ + +SQ WLAM++   +  +     +   + S   KS         
Sbjct: 313 TKILSCILEDYGPSALPVSQGWLAMLLTEILGSH-----KQSVKGSAPPKSDKTQIDQAN 367

Query: 297 XXXXXXXXXXXXAVFLSIGEIQGSAVEKGASDLPESDWGDLNRLLLFNIVGK---VTKKD 127
                          + +   Q   +       P SD      L L   VG+   + K +
Sbjct: 368 ILSATQTANQLVGAVVDLAGNQLRTINNSVDTFPLSDL-----LSLEPFVGRFKNLNKDN 422

Query: 126 KGRLTPANTVESTLKAMKALIELSTEDKGCQQRIIEMGGLQL 1
             +L  A++  +TLK +KAL E+   D  CQ  I++ G L L
Sbjct: 423 LPKLDAADSALATLKGIKALTEICAGDSECQNEIVDFGVLCL 464


>tr|Q608B8|Q608B8_METCA ATP-dependent RNA helicase, DEAD/DEAH box
            family OS=Methylococcus capsulatus GN=MCA1579 PE=4 SV=1
          Length = 1412

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 25/67 (37%), Positives = 36/67 (53%)
 Frame = -3

Query: 570  GLSSEEGKKWSSILLGWLFNSKLDDSARLTASKILAHVLDELGPTGISLSQAWLAMVILG 391
            G   EE +  +  +  WL     DD  RL A+ I A VLDE+GP G ++ +   A+    
Sbjct: 840  GAPLEERRTRAVAMRRWLEPRAADDLGRLDAAAI-ARVLDEIGPQGGAVEEVHDAL---- 894

Query: 390  TVNGYVT 370
            +V+GYVT
Sbjct: 895  SVSGYVT 901


>tr|A8PCK5|A8PCK5_COPC7 Predicted protein OS=Coprinopsis cinerea
            (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_05308 PE=4
            SV=1
          Length = 1329

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -3

Query: 147  GKVTKKDKGRLTPANTVESTLKAMKALIELSTEDKGCQQRIIEMGGLQL 1
            G   KK KGR TP  + ++ L+ +KAL E S      Q+ ++E GG++L
Sbjct: 1009 GGKKKKKKGRYTPRLSKKAVLERLKALAETSNT---AQEAVVEAGGVEL 1054