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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920877
Clone id YMU001_000142_G11
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000142_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCTTGGAACTCGAATCCTCTGTCAATAGCATTGACAGCTGGAGAGAGGTGGACAGAATGC
CACAAGACATTTCAAGGGAATTCCTTGGGTGTCTAGTATTTGGTCACTATTACTGCATTA
GCAGAGGTGACCAGATATTTTTTATAGCATCTTTTAAAGCTCCGATGCTCATCTATGACA
CACTTAAGAGAGCTTGGAGCTGGTGGGCTTGGCCGTTTTATGAAAAGTACGCAGAAAGAT
TTCCTATATTTGGTTTTGTGAAGGCGCTGCCTGCATTTCCTCCTTTTGGCTTTGCTTTTG
ATCTTCACTTCGGCGTTCTTGTGTAGAACGTGCTTAAAGTCAAGGAAGACTCAATACAGA
AGGCAATGCTTAAATAAAATGTGTGGCCTTTCTTTATGAACTATGTATGTATAATCTCAC
CTGGGCTTCAAGCCTGACACTACATATCAAGCGTGACAGTATGTG
■■Homology search results ■■ -
sp_hit_id Q39090
Definition sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana
Align length 56
Score (bit) 34.3
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920877|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_G11.
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis...    34   0.27 
sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Ar...    33   0.60 
sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190 OS=Ar...    32   1.3  
sp|P39801|COTG_BACSU Spore coat protein G OS=Bacillus subtilis G...    30   3.9  
sp|P21523|HLOX2_HIRME Homeobox protein LOX2 (Fragment) OS=Hirudo...    30   4.0  
sp|Q7VCH6|ISPE_PROMA 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    30   6.7  
sp|P41951|PQN25_CAEEL Prion-like-(Q/N-rich) domain-bearing prote...    30   6.8  

>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis
           thaliana GN=UFO PE=1 SV=2
          Length = 442

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 12/56 (21%), Positives = 29/56 (51%)
 Frame = +3

Query: 36  SWREVDRMPQDISREFLGCLVFGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSW 203
           +W E++RMPQ +  +F        + C+   + +  +    +  L++D ++++W W
Sbjct: 336 TWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLW 391


>sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710
           OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1
          Length = 448

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 36  SWREVDRMPQDISREFLGCLVFGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSW 203
           SW E+ RMP    R  L  L    + C  + + I F +  +   L+Y+  K+ WSW
Sbjct: 369 SWVEISRMPPKYFRALLR-LSAERFECFGQDNLICFTSWNQGKGLLYNVDKKIWSW 423


>sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190
           OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1
          Length = 403

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 33  DSWREVDRMPQDISREFLGCLV--FGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSW 203
           +SW EV+ +P  + R+F       + H YC+   + I         +L +   +R W W
Sbjct: 317 ESWIEVETLPDIVCRKFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHW 375


>sp|P39801|COTG_BACSU Spore coat protein G OS=Bacillus subtilis
           GN=cotG PE=1 SV=1
          Length = 195

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 299 KSKAKRRKCRQRLHKTKYRKSFCVLFIKRPSPPAPSSLKCVIDEHRSFKRCYKK 138
           KS++ ++ CR       Y+KS+C    K+ S     S +     +RS K+ YKK
Sbjct: 110 KSRSYKKSCRSYKKSRSYKKSYC--SHKKKSRSYKKSCRTHKKSYRSHKKYYKK 161


>sp|P21523|HLOX2_HIRME Homeobox protein LOX2 (Fragment) OS=Hirudo
           medicinalis GN=LOX2 PE=2 SV=1
          Length = 118

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = -1

Query: 306 EDQKQSQKEEMQAAPSQNQI*EIFLRTFHKTAKPTSSKLS*VCHR*ASEL*KML*KISGH 127
           ++++  +K+E+QA    N+I +  L  F  +A+  SS  S  CH   S L   L ++ GH
Sbjct: 55  QNRRMKEKKEVQAIRELNEIEKTKLGGFLGSARSPSSTTSASCHGTGSSLSPPLMEMGGH 114


>sp|Q7VCH6|ISPE_PROMA 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase OS=Prochlorococcus marinus GN=ispE PE=3 SV=1
          Length = 319

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 36  SWREVDRMPQDISREFLGCLVFGHYYCISRGDQIFFIASFK---APMLIYDTLKRAWSWW 206
           S ++++++  ++  +   CL  G  +C  RG+ +  I   K   A +L+ D L    + W
Sbjct: 134 SEKQLEKLGSELGSDVPFCLRGGTQFCFGRGESLEMIPEIKQSMAVVLVKDPLVEVSTPW 193

Query: 207 AWPFYEKYAE 236
           A   Y K+ E
Sbjct: 194 A---YSKFKE 200


>sp|P41951|PQN25_CAEEL Prion-like-(Q/N-rich) domain-bearing protein
           25 OS=Caenorhabditis elegans GN=pqn-25 PE=2 SV=3
          Length = 672

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 135 SGHLC*CSNSDQILDTQGIPLKCLVAFCPPLSSCQ 31
           S +LC    + Q LD+   P+ CLV+ CP  S CQ
Sbjct: 620 SSNLCSAGQTVQ-LDSSNQPINCLVSTCPNNSFCQ 653
tr_hit_id A9SVS4
Definition tr|A9SVS4|A9SVS4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 63
Score (bit) 46.2
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920877|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_G11.
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SVS4|A9SVS4_PHYPA Predicted protein OS=Physcomitrella paten...    46   8e-04
tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.005
tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea...    41   0.034
tr|A9TY82|A9TY82_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.034
tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.057
tr|Q6QVX3|Q6QVX3_VEROI Fimbriata (Fragment) OS=Verbena officinal...    38   0.22 
tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein (UFO-...    37   0.63 
tr|Q9ZTZ0|Q9ZTZ0_PEA Stamina pistilloidia OS=Pisum sativum GN=St...    36   0.83 
tr|Q84L18|Q84L18_PEA Stp-h4 OS=Pisum sativum PE=4 SV=1                 36   0.83 
tr|Q84JN4|Q84JN4_PEA Stp-h2 (Stp-h3) OS=Pisum sativum PE=4 SV=1        36   0.83 
tr|B6CNU4|B6CNU4_PETHY DOUBLE TOP OS=Petunia hybrida GN=DOT PE=2...    36   0.83 
tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.83 
tr|Q7XR72|Q7XR72_ORYSJ Os04g0668600 protein OS=Oryza sativa subs...    36   1.1  
tr|Q5SMS6|Q5SMS6_ORYSJ Fimbriata-like (Os01g0659900 protein) OS=...    36   1.1  
tr|B8AW14|B8AW14_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|B8A6W4|B8A6W4_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A3AYF5|A3AYF5_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A2ZW75|A2ZW75_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|Q6QVX4|Q6QVX4_9LAMI Fimbriata (Fragment) OS=Chelone glabra GN...    35   1.4  
tr|Q6QVX0|Q6QVX0_PAUTO Fimbriata (Fragment) OS=Paulownia tomento...    35   1.4  
tr|B6TJU9|B6TJU9_MAIZE Kelch motif family protein OS=Zea mays PE...    35   1.4  
tr|Q5BMD2|Q5BMD2_MEDTR Stamina pistilloidia (Fragment) OS=Medica...    35   1.8  
tr|A9SVA4|A9SVA4_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.8  
tr|Q1KUZ9|Q1KUZ9_9ROSI Putative uncharacterized protein OS=Cleom...    35   2.4  
tr|B3RR18|B3RR18_TRIAD Putative uncharacterized protein OS=Trich...    35   2.4  
tr|Q6QVX2|Q6QVX2_SALCC Fimbriata (Fragment) OS=Salvia coccinea G...    34   3.1  
tr|B4FF73|B4FF73_MAIZE F-box domain containing protein OS=Zea ma...    34   4.1  

>tr|A9SVS4|A9SVS4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166827 PE=4 SV=1
          Length = 625

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +3

Query: 30  IDSWREVDRMPQDISREFLGCLV-FGHYYCISRGDQIFFIASFKA---PMLIYDTLKRAW 197
           I  W EV+RMP  + REF   +V      C S GD IFF  S      P  ++D   R W
Sbjct: 533 IYEWVEVERMPPQMCREFENLMVQTKPLCCFSTGDLIFFTISSNTTYYPGAVFDLKNRVW 592

Query: 198 SWW 206
           +WW
Sbjct: 593 TWW 595


>tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_114815 PE=4 SV=1
          Length = 362

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 6   ELESSVNSIDSWREVDRMPQDISREFLGCLVFGHYYCISRGDQIFFIASFKAP-MLIYDT 182
           ELE S  +   W E+ RMP  + + FL     G + C+   D I  + S+K P  LIYD 
Sbjct: 271 ELEQSTMN---WVEIVRMPHTLCKRFLKDSRNGDFMCVGHNDLIC-LTSYKCPHALIYDF 326

Query: 183 LKRAWSW 203
            KR+W W
Sbjct: 327 SKRSWRW 333


>tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_44026 PE=4 SV=1
          Length = 330

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 6   ELESSVNSIDSWREVDRMPQDISREFLGCLVFGHYYCISRGDQIFFIASFKAPM-LIYDT 182
           ELE S      W EV RMP  + + FL     G + C+   + I  I S+K P+ LIYD 
Sbjct: 264 ELEQSTMM---WVEVVRMPHTLCKHFLKDSRNGDFMCVGHNNLIC-ITSYKCPLALIYDF 319

Query: 183 LKRAWSW 203
            KR+W W
Sbjct: 320 SKRSWRW 326


>tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164284 PE=4 SV=1
          Length = 648

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 39  WREVDRMPQDISREFLGCLVFGH-YYCISRGDQIFFIASFK--APMLIYDTLKRAWSWW 206
           W+E++RMP  + +EF   +V      C   GD IF         P L+YD  +R W+WW
Sbjct: 560 WQELERMPLQLCKEFEAKMVPSKPLSCFGTGDSIFLSIPTNDYMPALMYDLQRRTWNWW 618


>tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90500 PE=4 SV=1
          Length = 371

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 39  WREVDRMPQDISREFLGCLVFGH-YYCISRGDQIFFIASFK--APMLIYDTLKRAWSWW 206
           W E++RMP  + +EF   +V      C   GD IF         P L++D  +R W WW
Sbjct: 283 WEELERMPSQLCKEFEAKMVPSKPLSCFGTGDSIFLSIPTNNYMPALMFDLKRRTWDWW 341


>tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 416

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +3

Query: 39  WREVDRMPQDISREFLGCL-VFGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSWW-AW 212
           W E+ R+P +I R+F   L ++  + C   G+ I+        +L+YD  K  W W  + 
Sbjct: 333 WVEIVRVPTEICRDFSVPLEIYAPFVCSGLGNHIYITTHRNPNVLVYDLWKNTWQWLPSD 392

Query: 213 PFYEKYAERFPIFGF 257
           PF+ +  + F + GF
Sbjct: 393 PFFPRRRD-FHLLGF 406


>tr|A9TY82|A9TY82_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_98858 PE=4 SV=1
          Length = 395

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 36  SWREVDRMPQDISREFLGCLVFGHYY-CISRGDQIFF-IASFKAPMLIYDTLKRAW 197
           +W EVDRMP  +  EFL       Y+ CI   DQ+   +     P L+YD  K+ W
Sbjct: 313 TWEEVDRMPGALLEEFLRNAAQDAYFRCIGHSDQVLISMCGRNMPQLLYDVRKKRW 368


>tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234671 PE=4 SV=1
          Length = 462

 Score = 40.0 bits (92), Expect = 0.057
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 39  WREVDRMPQDISREFLGCL-VFGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSW 203
           W E++RMP+ + REF+  L    H++    G+ I    S  +P  ++D   R W W
Sbjct: 340 WVEIERMPRKLRREFVEMLRPSRHFFGFGNGNIICLTISESSPAAVFDLEDRTWKW 395


>tr|Q6QVX3|Q6QVX3_VEROI Fimbriata (Fragment) OS=Verbena officinalis
           GN=FIM PE=2 SV=1
          Length = 369

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 39  WREVDRMPQDISREFLGCLVFGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSW 203
           W E++RMPQ +  +F        + C++ GD +  +       L++D + + W W
Sbjct: 259 WVEIERMPQQLYNQFADIEAGRGFNCVAHGDFVVILIKGSDKALLFDFVGKRWVW 313


>tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein
           (UFO-like protein) OS=Lotus japonicus GN=Pfo PE=2 SV=1
          Length = 449

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 39  WREVDRMPQDISREFLGCLVFGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSWWAWPF 218
           W E +RMPQ +  +F        + C+  G+ +  +       L+YD +++ W W     
Sbjct: 352 WVESERMPQQLYIQFAEIEGGNGFECVGHGEFVVIMIKGTDKALLYDLVRKRWQWIPPCP 411

Query: 219 YEKYAERFPIFGF 257
           Y  Y + F + GF
Sbjct: 412 YAGY-DGFELHGF 423