BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920884|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_H11.
         (395 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo...    31   2.2  
sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos ...    31   2.2  
sp|P56824|HCYC_SEPOF Hemocyanin, units C and D (Fragments) OS=Se...    30   4.9  
sp|Q3Z6J2|RL25_DEHE1 50S ribosomal protein L25 OS=Dehalococcoide...    29   6.4  
sp|Q3Z1Y5|RNFD_SHISS Electron transport complex protein rnfD OS=...    29   8.3  
sp|Q320Y7|RNFD_SHIBS Electron transport complex protein rnfD OS=...    29   8.3  
sp|B1IQC4|RNFD_ECOLC Electron transport complex protein rnfD OS=...    29   8.3  
sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus ...    29   8.3  

>sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo
           sapiens GN=ERCC1 PE=1 SV=1
          Length = 297

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 313 NFVSPLLDCLTKVKETNGSDKSTVLTS 393
           +FVS + +CLT VK  N +D  T+LT+
Sbjct: 230 DFVSRVTECLTTVKSVNKTDSQTLLTT 256


>sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos
           taurus GN=ERCC1 PE=2 SV=1
          Length = 294

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 313 NFVSPLLDCLTKVKETNGSDKSTVLTS 393
           +FVS + +CLT VK  N +D  T+LT+
Sbjct: 226 DFVSRVTECLTTVKSVNKTDSQTLLTT 252


>sp|P56824|HCYC_SEPOF Hemocyanin, units C and D (Fragments) OS=Sepia
           officinalis PE=1 SV=1
          Length = 250

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 377 LLSEPLVSFTFVKQ-SKRGETKLITA*YRLPPLTSSSHSTRAHLSQKTA*NASICYSMPS 201
           L  + L+   ++KQ +K G  + I A + LP    S   T  H            + MP+
Sbjct: 116 LSGDELILRNYIKQMTKDGSYQQIAAFHGLPAQCPSEDGTTVH--------TCCLHGMPT 167

Query: 200 FGTWHTWYISFQQE 159
           F  WH  Y++  ++
Sbjct: 168 FPHWHRLYVALVED 181


>sp|Q3Z6J2|RL25_DEHE1 50S ribosomal protein L25 OS=Dehalococcoides
           ethenogenes (strain 195) GN=rplY PE=3 SV=1
          Length = 218

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 280 PAQVIAQEHIYLRRQHKMPAYVTPCHLLAHGIHGTSLSSKNEPVRTT 140
           P QV   ++ +LR Q      +TP H+  HG+   +L +  + + +T
Sbjct: 10  PRQVFGNKNKFLRAQG-----ITPVHIFGHGLKSLALQANTQELEST 51


>sp|Q3Z1Y5|RNFD_SHISS Electron transport complex protein rnfD
           OS=Shigella sonnei (strain Ss046) GN=rnfD PE=3 SV=1
          Length = 352

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 92  VEKCLAFVVFSNVCNSCGPHRFILAGKRCTMYAMCQKMAWSNICWHFMLSSEIDVLLCYD 271
           VE+ + + ++S +    G     LA     ++ + QK     I WH  LS  + + LC  
Sbjct: 202 VEQIMQYPIYSGILAGAGWQWVNLAWLAGGLWLLWQKA----IRWHIPLSFLVTLALCAT 257

Query: 272 LSWL 283
           L WL
Sbjct: 258 LGWL 261


>sp|Q320Y7|RNFD_SHIBS Electron transport complex protein rnfD
           OS=Shigella boydii serotype 4 (strain Sb227) GN=rnfD
           PE=3 SV=1
          Length = 352

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 92  VEKCLAFVVFSNVCNSCGPHRFILAGKRCTMYAMCQKMAWSNICWHFMLSSEIDVLLCYD 271
           VE+ + + ++S +    G     LA     ++ + QK     I WH  LS  + + LC  
Sbjct: 202 VEQIMQYPIYSGILAGAGWQWVNLAWLAGGLWLLWQKA----IRWHIPLSFLVTLALCAT 257

Query: 272 LSWL 283
           L WL
Sbjct: 258 LGWL 261


>sp|B1IQC4|RNFD_ECOLC Electron transport complex protein rnfD
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=rnfD PE=3 SV=1
          Length = 352

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 92  VEKCLAFVVFSNVCNSCGPHRFILAGKRCTMYAMCQKMAWSNICWHFMLSSEIDVLLCYD 271
           VE+ + + ++S +    G     LA     ++ + QK     I WH  LS  + + LC  
Sbjct: 202 VEQIMQYPIYSGILAGAGWQWVNLAWLAGGLWLLWQKA----IRWHIPLSFLVTLALCAT 257

Query: 272 LSWL 283
           L WL
Sbjct: 258 LGWL 261


>sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus
           musculus GN=Ercc1 PE=2 SV=1
          Length = 298

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 313 NFVSPLLDCLTKVKETNGSDKSTVLTS 393
           NF+S   +CLT VK  N +D  T+L +
Sbjct: 230 NFLSRATECLTTVKSVNKTDSQTLLAT 256

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920884|Adiantum capillus-veneris mRNA, clone:
YMU001_000142_H11.
         (395 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******