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NBDC - LSDB Archive
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BP920887
Clone id YMU001_000143_A03
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGTAATATGAGATTTTTTATATGTACAAAAGACCACAATTGGGCAGTAATCTGTATCAG
CATGAGCTATGAAGAGTAGTCAGGCTTTGTTTCACACTGAGATGCAGCAATGCATCACTC
GCAATTTTGCGAGCCATCTCTTGATAAAGTAATGTTCCATAACACATGACTAGCAATTTA
AACCTGACAGAGGCCTTAATGAAATGCATCAAGTACATCAGTGCCTCGAAGCCACTGGAA
TCGACCATGGCGTTGGCCATCTCATTGGGCAAAAGAACTTCTGATGTATGGAAATAAAAT
CATCCAATCATCGGCGTCGCACTGCATTGATTATCATCAAGCAACATACCTTTCAGGCTT
TTGGTAAGCCATATTGCAGTCTCTCTGGGAGACACTTTGCCTCGTCCAAAAGGCTTGAGC
ACAATGGCAAGCTCATCAAATCGCTGCTGCTGGAGTAGTTGTGCACTGAGCTCCAGCAAT
CCCTCAAGGGCCTCTGCTCTTTGGCGAGCGGACTTCACATCTATACC
■■Homology search results ■■ -
sp_hit_id Q0WPH8
Definition sp|Q0WPH8|NEK5_ARATH Serine/threonine-protein kinase Nek5 OS=Arabidopsis thaliana
Align length 35
Score (bit) 61.6
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920887|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_A03.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0WPH8|NEK5_ARATH Serine/threonine-protein kinase Nek5 OS=Ara...    62   2e-09
sp|Q94CU5|NEK5_ORYSJ Serine/threonine-protein kinase Nek5 OS=Ory...    59   1e-08
sp|Q60DG4|NEK4_ORYSJ Serine/threonine-protein kinase Nek4 OS=Ory...    55   1e-07
sp|Q6ZEZ5|NEK3_ORYSJ Serine/threonine-protein kinase Nek3 OS=Ory...    54   3e-07
sp|Q9SLI2|NEK1_ARATH Serine/threonine-protein kinase Nek1 OS=Ara...    53   7e-07
sp|Q8RX66|NEK3_ARATH Serine/threonine-protein kinase Nek3 OS=Ara...    53   1e-06
sp|Q10GB1|NEK1_ORYSJ Serine/threonine-protein kinase Nek1 OS=Ory...    52   2e-06
sp|Q9CAU7|NEK2_ARATH Serine/threonine-protein kinase Nek2 OS=Ara...    52   2e-06
sp|Q2QMH1|NEK2_ORYSJ Serine/threonine-protein kinase Nek2 OS=Ory...    49   1e-05
sp|A2ZMH2|NEK2_ORYSI Serine/threonine-protein kinase Nek2 OS=Ory...    49   1e-05
sp|Q8RXT4|NEK4_ARATH Serine/threonine-protein kinase Nek4 OS=Ara...    48   2e-05
sp|Q6YY75|NEK6_ORYSJ Serine/threonine-protein kinase Nek6 OS=Ory...    46   9e-05
sp|Q9LT35|NEK6_ARATH Serine/threonine-protein kinase Nek6 OS=Ara...    46   1e-04
sp|Q9LHI7|NEK7_ARATH Serine/threonine-protein kinase Nek7 OS=Ara...    36   0.093
sp|O74429|VIP1_SCHPO Inositol hexakisphosphate and diphosphoinos...    31   3.9  
sp|Q6BM98|LYS4_DEBHA Homoaconitase, mitochondrial OS=Debaryomyce...    30   5.1  
sp|O88553|ZFP37_RAT Zinc finger protein 37 OS=Rattus norvegicus ...    30   6.7  
sp|Q9S4X5|YUBA_ECOLI Uncharacterized protein yubA OS=Escherichia...    30   6.7  
sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protei...    30   6.7  
sp|O14170|POP2_SCHPO WD repeat-containing protein pop2 OS=Schizo...    30   6.7  
sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo ...    30   6.7  
sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus mu...    30   6.7  
sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo s...    30   6.7  
sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphodieste...    30   6.7  
sp|Q5R5M5|ENPP3_PONAB Ectonucleotide pyrophosphatase/phosphodies...    30   8.7  
sp|O14638|ENPP3_HUMAN Ectonucleotide pyrophosphatase/phosphodies...    30   8.7  
sp|P33609|DPOLA_MOUSE DNA polymerase alpha catalytic subunit OS=...    30   8.7  

>sp|Q0WPH8|NEK5_ARATH Serine/threonine-protein kinase Nek5
            OS=Arabidopsis thaliana GN=NEK5 PE=1 SV=1
          Length = 956

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 27/35 (77%), Positives = 33/35 (94%)
 Frame = -1

Query: 424  DELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDD 320
            +ELAIVL+PFG+ KVSPRETAIWL KSLKGM+++D
Sbjct: 908  EELAIVLQPFGKNKVSPRETAIWLAKSLKGMMIED 942


>sp|Q94CU5|NEK5_ORYSJ Serine/threonine-protein kinase Nek5 OS=Oryza
            sativa subsp. japonica GN=NEK5 PE=2 SV=1
          Length = 943

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = -1

Query: 424  DELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDD 320
            +ELA+VLKPFG+ KVSPRETAIWL KS KGM+ D+
Sbjct: 903  EELAVVLKPFGKDKVSPRETAIWLAKSFKGMMNDE 937


>sp|Q60DG4|NEK4_ORYSJ Serine/threonine-protein kinase Nek4 OS=Oryza
            sativa subsp. japonica GN=NEK4 PE=2 SV=1
          Length = 943

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 24/35 (68%), Positives = 31/35 (88%)
 Frame = -1

Query: 424  DELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDD 320
            +ELAIVL+PFG+ KVSPRETAIWL +S KGM+ ++
Sbjct: 903  EELAIVLQPFGKNKVSPRETAIWLARSFKGMMNEE 937


>sp|Q6ZEZ5|NEK3_ORYSJ Serine/threonine-protein kinase Nek3 OS=Oryza
           sativa subsp. japonica GN=NEK3 PE=2 SV=1
          Length = 585

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLKG 335
           F+EL I+LKPFG GK SPRETAIWL+KS KG
Sbjct: 552 FEELGILLKPFGPGKASPRETAIWLSKSFKG 582


>sp|Q9SLI2|NEK1_ARATH Serine/threonine-protein kinase Nek1
           OS=Arabidopsis thaliana GN=NEK1 PE=2 SV=2
          Length = 612

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLK 338
           +DEL ++LKPFG GKVSPRETAIW+ KSLK
Sbjct: 560 YDELNVLLKPFGPGKVSPRETAIWIAKSLK 589


>sp|Q8RX66|NEK3_ARATH Serine/threonine-protein kinase Nek3
           OS=Arabidopsis thaliana GN=NEK3 PE=2 SV=1
          Length = 568

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLK 338
           +DEL ++LKPFG GKVSPRETAIWL+KS K
Sbjct: 529 YDELNVLLKPFGPGKVSPRETAIWLSKSFK 558


>sp|Q10GB1|NEK1_ORYSJ Serine/threonine-protein kinase Nek1 OS=Oryza
           sativa subsp. japonica GN=NEK1 PE=2 SV=1
          Length = 599

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLK 338
           +DEL ++LKPFG  KVSPRETAIWLTKS K
Sbjct: 566 YDELGVLLKPFGPEKVSPRETAIWLTKSFK 595


>sp|Q9CAU7|NEK2_ARATH Serine/threonine-protein kinase Nek2
           OS=Arabidopsis thaliana GN=NEK2 PE=2 SV=1
          Length = 606

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLK 338
           +DEL ++L+PFG GKVSPRETAIWL+KS K
Sbjct: 568 YDELNVLLRPFGPGKVSPRETAIWLSKSFK 597


>sp|Q2QMH1|NEK2_ORYSJ Serine/threonine-protein kinase Nek2 OS=Oryza
           sativa subsp. japonica GN=NEK2 PE=2 SV=1
          Length = 591

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLK 338
           ++EL I+LKPFG  K SPRETAIWLTKS K
Sbjct: 558 YEELGILLKPFGPEKASPRETAIWLTKSFK 587


>sp|A2ZMH2|NEK2_ORYSI Serine/threonine-protein kinase Nek2 OS=Oryza
           sativa subsp. indica GN=NEK2 PE=2 SV=1
          Length = 591

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLK 338
           ++EL I+LKPFG  K SPRETAIWLTKS K
Sbjct: 558 YEELGILLKPFGPEKASPRETAIWLTKSFK 587
tr_hit_id A9RQH0
Definition tr|A9RQH0|A9RQH0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 68.6
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920887|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_A03.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RQH0|A9RQH0_PHYPA Predicted protein (Fragment) OS=Physcomit...    69   2e-10
tr|A7PGD0|A7PGD0_VITVI Chromosome chr6 scaffold_15, whole genome...    62   1e-08
tr|A5BFG7|A5BFG7_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|Q2HSJ8|Q2HSJ8_MEDTR Protein kinase OS=Medicago truncatula GN=...    57   7e-07
tr|Q8SA64|Q8SA64_9ROSI NIMA-related protein kinase OS=Populus tr...    55   2e-06
tr|B8AYQ1|B8AYQ1_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A3B4G5|A3B4G5_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|B8B7P0|B8B7P0_ORYSI Putative uncharacterized protein OS=Oryza...    54   3e-06
tr|B7ECN6|B7ECN6_ORYSJ cDNA clone:J013086M12, full insert sequen...    54   3e-06
tr|A3BH40|A3BH40_ORYSJ Putative uncharacterized protein OS=Oryza...    54   3e-06
tr|Q947T1|Q947T1_SOLLC LSTK-1-like kinase OS=Solanum lycopersicu...    54   5e-06
tr|A7Q5Y4|A7Q5Y4_VITVI Chromosome chr14 scaffold_54, whole genom...    54   6e-06
tr|A5C5B1|A5C5B1_VITVI Putative uncharacterized protein OS=Vitis...    54   6e-06
tr|A7PUE6|A7PUE6_VITVI Chromosome chr7 scaffold_31, whole genome...    53   8e-06
tr|B8AN30|B8AN30_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|B7EMV6|B7EMV6_ORYSJ cDNA clone:J033073A22, full insert sequen...    52   2e-05
tr|A3AKP5|A3AKP5_ORYSJ Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|B7EKP8|B7EKP8_ORYSJ cDNA clone:J023075D08, full insert sequen...    49   1e-04
tr|B6U7Q1|B6U7Q1_MAIZE Serine/threonine-protein kinase Nek4 OS=Z...    48   3e-04
tr|B8AEP6|B8AEP6_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A3A8J1|A3A8J1_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A7PWA8|A7PWA8_VITVI Chromosome chr8 scaffold_34, whole genome...    44   0.004
tr|A5CAJ8|A5CAJ8_VITVI Putative uncharacterized protein OS=Vitis...    44   0.004
tr|A7NZT6|A7NZT6_VITVI Chromosome chr6 scaffold_3, whole genome ...    44   0.005
tr|Q0WM30|Q0WM30_ARATH Putative uncharacterized protein At3g1220...    36   0.98 
tr|B7BZ79|B7BZ79_9FIRM Putative uncharacterized protein OS=Roseb...    36   1.3  
tr|Q8BX23|Q8BX23_MOUSE Putative uncharacterized protein OS=Mus m...    35   2.9  
tr|Q66JQ2|Q66JQ2_MOUSE C330011K17Rik protein OS=Mus musculus GN=...    35   2.9  
tr|O14913|O14913_HUMAN Kruppel-associated box protein OS=Homo sa...    35   2.9  

>tr|A9RQH0|A9RQH0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_69270 PE=4 SV=1
          Length = 811

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 38/65 (58%), Positives = 41/65 (63%)
 Frame = -1

Query: 514 GIDVKSXXXXXXXXXXXXXXXXXXXXXXRFDELAIVLKPFGRGKVSPRETAIWLTKSLKG 335
           G+DVKS                      R +ELAIVLKPFGRGKVSPRETAIWLTKSLKG
Sbjct: 737 GLDVKSYRQRAEALEGLLELSAQLLSQHRLEELAIVLKPFGRGKVSPRETAIWLTKSLKG 796

Query: 334 MLLDD 320
           ML D+
Sbjct: 797 MLGDE 801


>tr|A7PGD0|A7PGD0_VITVI Chromosome chr6 scaffold_15, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00017494001
            PE=4 SV=1
          Length = 936

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 27/36 (75%), Positives = 34/36 (94%)
 Frame = -1

Query: 424  DELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDDN 317
            +ELA+VLKPFG+ KVSPRETAIWL KSLKGM+++D+
Sbjct: 897  EELAVVLKPFGKDKVSPRETAIWLAKSLKGMMVEDS 932


>tr|A5BFG7|A5BFG7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_032788 PE=4 SV=1
          Length = 1177

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 27/36 (75%), Positives = 34/36 (94%)
 Frame = -1

Query: 424  DELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDDN 317
            +ELA+VLKPFG+ KVSPRETAIWL KSLKGM+++D+
Sbjct: 1138 EELAVVLKPFGKDKVSPRETAIWLAKSLKGMMVEDS 1173


>tr|Q2HSJ8|Q2HSJ8_MEDTR Protein kinase OS=Medicago truncatula
            GN=MtrDRAFT_AC151522g2v2 PE=4 SV=1
          Length = 1001

 Score = 56.6 bits (135), Expect = 7e-07
 Identities = 24/36 (66%), Positives = 33/36 (91%)
 Frame = -1

Query: 424  DELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDDN 317
            +ELA+VLKPFG+ KVS RETAIWL KSLKG++++++
Sbjct: 962  EELAVVLKPFGKDKVSSRETAIWLAKSLKGLMVEES 997


>tr|Q8SA64|Q8SA64_9ROSI NIMA-related protein kinase OS=Populus
           tremula x Populus alba PE=2 SV=1
          Length = 621

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/39 (64%), Positives = 28/39 (71%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDDNQC 311
           +DEL ++LKPFG GKVSPRETAIWLTKS K        C
Sbjct: 583 YDELGVLLKPFGPGKVSPRETAIWLTKSFKENTAKTEDC 621


>tr|B8AYQ1|B8AYQ1_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_20119 PE=4 SV=1
          Length = 943

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 24/35 (68%), Positives = 31/35 (88%)
 Frame = -1

Query: 424  DELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDD 320
            +ELAIVL+PFG+ KVSPRETAIWL +S KGM+ ++
Sbjct: 903  EELAIVLQPFGKNKVSPRETAIWLARSFKGMMNEE 937


>tr|A3B4G5|A3B4G5_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_017937 PE=4 SV=1
          Length = 969

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 24/35 (68%), Positives = 31/35 (88%)
 Frame = -1

Query: 424  DELAIVLKPFGRGKVSPRETAIWLTKSLKGMLLDD 320
            +ELAIVL+PFG+ KVSPRETAIWL +S KGM+ ++
Sbjct: 929  EELAIVLQPFGKNKVSPRETAIWLARSFKGMMNEE 963


>tr|B8B7P0|B8B7P0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25094 PE=4 SV=1
          Length = 585

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLKG 335
           F+EL I+LKPFG GK SPRETAIWL+KS KG
Sbjct: 552 FEELGILLKPFGPGKASPRETAIWLSKSFKG 582


>tr|B7ECN6|B7ECN6_ORYSJ cDNA clone:J013086M12, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 585

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLKG 335
           F+EL I+LKPFG GK SPRETAIWL+KS KG
Sbjct: 552 FEELGILLKPFGPGKASPRETAIWLSKSFKG 582


>tr|A3BH40|A3BH40_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022362 PE=4 SV=1
          Length = 554

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = -1

Query: 427 FDELAIVLKPFGRGKVSPRETAIWLTKSLKG 335
           F+EL I+LKPFG GK SPRETAIWL+KS KG
Sbjct: 521 FEELGILLKPFGPGKASPRETAIWLSKSFKG 551