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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920888
Clone id YMU001_000143_A04
Library
Length 446
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGGAGTTTTTTGTGGGAAAAGGGATGAGGAGCCTTGTTAACATGCTTCTTTGGTGGAGG
TTTATTTGATGGTGAGAGAAGATTGTTAATTTAGGTAGTGACTTCATGGTATACCAATTC
TCCCACGGTTTCTTCCTTAGGTAGAGATTCTATCTCCTCTAGGAGAGAGACTTGGGACCT
CTTTCTAGCATTATGAGCCGCTATGTTCAAGGAAGAGGCTAAATGAGTTTGAAGGATCTC
ATTTTGCAAGAGGGCATCAAACTCATTAAGGGAAGATTGCTTCCATAAGAGTAGTTGGCT
AGCCCAAGCCGAAGGTGGTACTCTAGGAAAGGAAATGGGAGCAAGCTTTTTGGTGAGTTC
TAAAAGCCGCTCTTCCACAATGTCGTGGTAGTCATCAAAGCTTCTCTGGAGGTTCTTTAC
AAGTAGGGTTTGTGCTTGGATATACA
■■Homology search results ■■ -
sp_hit_id O97961
Definition sp|O97961|KTN1_VULVU Kinectin OS=Vulpes vulpes
Align length 129
Score (bit) 33.1
E-value 0.54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920888|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_A04.
         (446 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O97961|KTN1_VULVU Kinectin OS=Vulpes vulpes GN=KTN1 PE=2 SV=1       33   0.54 
sp|P32523|PRP19_YEAST Pre-mRNA-splicing factor 19 OS=Saccharomyc...    31   2.7  
sp|Q02283|HAT5_ARATH Homeobox-leucine zipper protein HAT5 OS=Ara...    30   3.5  
sp|Q1KXX1|RPOC1_HELAN DNA-directed RNA polymerase subunit beta' ...    30   4.6  
sp|B2LMI1|RPOC1_GUIAB DNA-directed RNA polymerase subunit beta' ...    30   4.6  
sp|P16497|KINA_BACSU Sporulation kinase A OS=Bacillus subtilis G...    30   4.6  
sp|Q56P12|RPOC1_LACSA DNA-directed RNA polymerase subunit beta' ...    30   6.0  
sp|O02811|PI4KA_BOVIN Phosphatidylinositol 4-kinase alpha OS=Bos...    30   6.0  
sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus muscul...    30   6.0  
sp|Q86UP2|KTN1_HUMAN Kinectin OS=Homo sapiens GN=KTN1 PE=1 SV=1        29   7.8  
sp|Q91274|ALBU_PETMA Serum albumin SDS-1 OS=Petromyzon marinus G...    29   7.8  

>sp|O97961|KTN1_VULVU Kinectin OS=Vulpes vulpes GN=KTN1 PE=2 SV=1
          Length = 1330

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 25/129 (19%)
 Frame = -3

Query: 441  IQAQTLLVKNLQRSFDDYHDIVEERLLELTKKLAPISFPRVPPSAWASQ------LLLWK 280
            ++A+ L V N +++  D    +E     L +++  I   +    +  SQ      LL  K
Sbjct: 817  LEAEVLKVANKEKTIQDLKQEIEA----LKEEIGNIQLEKAQQLSITSQIQELQNLLKGK 872

Query: 279  QSSLNEFDALLQ-------------------NEILQTHLASSLNIAAHNARKRSQVSLLE 157
            +  +N    +L+                   NE L+TH+     +A HN ++    S LE
Sbjct: 873  EEQMNTMKTVLEEKEKDLASRGKWLQDLQEENESLKTHIQE---VAQHNLKEACSASRLE 929

Query: 156  EIESLPKEE 130
            E+E++ KE+
Sbjct: 930  ELETVLKEK 938


>sp|P32523|PRP19_YEAST Pre-mRNA-splicing factor 19 OS=Saccharomyces
           cerevisiae GN=PRP19 PE=1 SV=2
          Length = 503

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = -3

Query: 357 LTKKLAPISFPRVPPSAWASQLLLWKQ-------SSLNEFDALLQNEILQTHLASSLNIA 199
           LTKKL+ + + R      A+QLL+ K         S  +  A+ + E LQ  L SS +  
Sbjct: 105 LTKKLSTVMYERDAAKLVAAQLLMEKNEDSKDLPKSSQQAVAITREEFLQGLLQSSRDFV 164

Query: 198 AHNARKRSQVSLLEEIESL 142
           A    K  +  +L+ +E L
Sbjct: 165 ARGKLKAPKWPILKNLELL 183


>sp|Q02283|HAT5_ARATH Homeobox-leucine zipper protein HAT5
           OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1
          Length = 272

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
 Frame = -3

Query: 411 LQRSFDDYHDIVEERLLELTKKLAPISFPRVPPSAWASQLLLWKQSSLNEFDALLQNEIL 232
           L++SF+  + +  ER  +L KKL     PR     + ++   WK   L     LL++   
Sbjct: 80  LEKSFETENKLEPERKTQLAKKLG--LQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYD 137

Query: 231 QTHLASSLNIAAHNARKRSQV-SLLEEIESLPKEETVGE 118
           Q  L++  +I   N + RS+V SL E+++   K+ET  E
Sbjct: 138 QL-LSNYDSIVMDNDKLRSEVTSLTEKLQG--KQETANE 173


>sp|Q1KXX1|RPOC1_HELAN DNA-directed RNA polymerase subunit beta'
           OS=Helianthus annuus GN=rpoC1 PE=3 SV=2
          Length = 689

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = -3

Query: 423 LVKNLQRSFDDYHDIVEERLLELTKKLAPISFPRVPPSAWASQLLLWKQSSLNEFDALLQ 244
           + K+L    +     V E LL      +  S   V PS    +  L ++ ++  F A + 
Sbjct: 352 IYKSLSDVIEGKEGRVRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQAFVI 411

Query: 243 NEILQTHLASSLNIAAHNARKRSQV--SLLEEI 151
            ++++ HLAS++ +A    RK+  +   +L+EI
Sbjct: 412 RDLIRKHLASNIGVAKSQIRKKKPIVWEILQEI 444


>sp|B2LMI1|RPOC1_GUIAB DNA-directed RNA polymerase subunit beta'
           OS=Guizotia abyssinica GN=rpoC1 PE=3 SV=1
          Length = 696

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = -3

Query: 423 LVKNLQRSFDDYHDIVEERLLELTKKLAPISFPRVPPSAWASQLLLWKQSSLNEFDALLQ 244
           + K+L    +     V E LL      +  S   V PS    +  L ++ ++  F A + 
Sbjct: 359 IYKSLSDVIEGKEGRVRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQAFVI 418

Query: 243 NEILQTHLASSLNIAAHNARKRSQV--SLLEEI 151
            ++++ HLAS++ +A    RK+  +   +L+EI
Sbjct: 419 RDLIRKHLASNIGVAKSQIRKKKPIVWEILQEI 451


>sp|P16497|KINA_BACSU Sporulation kinase A OS=Bacillus subtilis
           GN=kinA PE=1 SV=2
          Length = 606

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 27/126 (21%)
 Frame = -3

Query: 396 DDYHDIVEERLLELTKKL--------------API-----SFPRVPPSAWASQLLLWKQS 274
           ++YHDIV+ R++ + K +               P+     + P V  +  A  LLL   S
Sbjct: 194 EEYHDIVKNRIIRMQKGMEVGMIEQTWKRLDGTPVHLEVKASPTVYKNQQAELLLLIDIS 253

Query: 273 SLNEFDALLQ--NEILQTHLASSLNIAA--HNAR----KRSQVSLLEEIESLPKEETVGE 118
           S  +F  +LQ   E  Q  + +S++  A  HN +      S +SL    E+   E+ +G+
Sbjct: 254 SRKKFQTILQKSRERYQLLIQNSIDTIAVIHNGKWVFMNESGISL---FEAATYEDLIGK 310

Query: 117 LVYHEV 100
            +Y ++
Sbjct: 311 NIYDQL 316


>sp|Q56P12|RPOC1_LACSA DNA-directed RNA polymerase subunit beta'
           OS=Lactuca sativa GN=rpoC1 PE=3 SV=2
          Length = 689

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = -3

Query: 417 KNLQRSFDDYHDIVEERLLELTKKLAPISFPRVPPSAWASQLLLWKQSSLNEFDALLQNE 238
           K+L    +     V E LL      +  S   V PS    +  L ++ ++  F A +  +
Sbjct: 354 KSLSDVIEGKEGRVRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQAFVIRD 413

Query: 237 ILQTHLASSLNIAAHNARKRSQV--SLLEEI 151
           +++ HLAS++ +A    RK+  +   +L+EI
Sbjct: 414 LIRKHLASNIGVAKSQIRKKKPIVWEILQEI 444


>sp|O02811|PI4KA_BOVIN Phosphatidylinositol 4-kinase alpha OS=Bos
           taurus GN=PI4KA PE=2 SV=1
          Length = 2043

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -3

Query: 387 HDIVEERLLELTKKLAPISFPRVPPSAWASQLLLWKQSSLNEFDALLQNEILQTHLASSL 208
           H   E+ LL      AP   PRVP      +L   ++ S N+F ++L + +L      SL
Sbjct: 139 HSSSEDSLLSRLFPRAPAHSPRVP-----EELEGVRRRSFNDFRSILPSSLLTVCQEGSL 193

Query: 207 NIAAHNARKRSQVS 166
              A +A   +QVS
Sbjct: 194 KRKASSASSVAQVS 207


>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus
           GN=Blm PE=1 SV=1
          Length = 1416

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 410 SREALMTTTTLWKSGF*NSPKSLLPFPFLEYHLR 309
           S E  + TTT  K+GF  +PK+L   P L  HL+
Sbjct: 469 STEECLPTTTPGKTGFSATPKNLFERPLLNSHLQ 502


>sp|Q86UP2|KTN1_HUMAN Kinectin OS=Homo sapiens GN=KTN1 PE=1 SV=1
          Length = 1357

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
 Frame = -3

Query: 441  IQAQTLLVKNLQRSFDDYHDIVEERLLELTKKLAPISFPRVPPSAWASQ------LLLWK 280
            ++A+ L V N +++  D    +++ +  L +++  +   +    +  S+      LL  K
Sbjct: 817  LEAELLKVANKEKTVQD----LKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGK 872

Query: 279  QSSLNEFDALLQ-------------------NEILQTHLASSLNIAAHNARKRSQVSLLE 157
            +  +N   A+L+                   NE L+ H+     +A HN ++ S  S  E
Sbjct: 873  EEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQE---VAQHNLKEASSASQFE 929

Query: 156  EIESLPKEE 130
            E+E + KE+
Sbjct: 930  ELEIVLKEK 938
tr_hit_id B1SH12
Definition tr|B1SH12|B1SH12_9STRE Putative uncharacterized protein OS=Streptococcus infantarius subsp. infantarius ATCC BAA-102
Align length 85
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920888|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_A04.
         (446 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1SH12|B1SH12_9STRE Putative uncharacterized protein OS=Strep...    36   1.1  
tr|B4PW30|B4PW30_DROYA GE14500 OS=Drosophila yakuba GN=GE14500 P...    35   1.4  
tr|Q54C83|Q54C83_DICDI NADH:flavin oxidoreductase/NADH oxidase d...    35   1.8  
tr|Q868N0|Q868N0_IXOSC Is5 OS=Ixodes scapularis PE=2 SV=1              34   4.1  
tr|B0G116|B0G116_DICDI NADH:flavin oxidoreductase/NADH oxidase d...    34   4.1  
tr|B5QRW2|B5QRW2_LACRH Phosphatidylglycerophosphate synthase OS=...    33   7.0  

>tr|B1SH12|B1SH12_9STRE Putative uncharacterized protein
           OS=Streptococcus infantarius subsp. infantarius ATCC
           BAA-102 GN=STRINF_01980 PE=4 SV=1
          Length = 667

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
 Frame = -3

Query: 420 VKNLQRSFDDYHDIVEERLLELTKKLAPISFPRVPPSAWASQLLLWKQSSLNEF------ 259
           VKN+     D  D+VEE+L E  K++  + +PR   + W+  ++      ++E       
Sbjct: 390 VKNVTAFDADLADVVEEKLAEYHKQMNAVDYPRALDAVWS--IISRTNKYIDETAPWVLA 447

Query: 258 -DALLQNEI--LQTHLASSLNIAAH 193
            D   ++E+  +  HLA+SL + AH
Sbjct: 448 KDDAKRDELAAVMAHLAASLRVVAH 472


>tr|B4PW30|B4PW30_DROYA GE14500 OS=Drosophila yakuba GN=GE14500 PE=4
            SV=1
          Length = 1573

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
 Frame = -3

Query: 381  IVEERLLELTKKLAPISFP---RVPPSAWA----SQLLLWKQSSLNEFDALLQNEILQTH 223
            + E +LLE    + PI  P   +  P  WA    ++  LW+  +LN+     QNE  Q +
Sbjct: 917  LTETQLLETQNLMIPIWLPPNKQQQPVQWAGMTNAEASLWEVGNLNKE----QNEDQQLY 972

Query: 222  LASSLNIAAHNARKRSQVSLLEEIES--LPKEETVGEL 115
            +  S ++   N  K  Q+S L + +S  + K  T GE+
Sbjct: 973  IQKSSDVCFANTEKDVQISPLLQAQSGNIVKHSTSGEI 1010


>tr|Q54C83|Q54C83_DICDI NADH:flavin oxidoreductase/NADH oxidase
           domain-containing protein OS=Dictyostelium discoideum
           GN=DDB_0191789 PE=4 SV=1
          Length = 409

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +2

Query: 41  TCFFGGGLFDGERRLLI*VVTS----WYTNSPTVSSLGRDSISSRRETWDL 181
           T  +GGG FDG  +LLI +V S    W T  P    +  D        WDL
Sbjct: 238 TDIYGGGSFDGRIKLLIEIVKSVRSVWSTEKPLAVRISADEWVENENGWDL 288


>tr|Q868N0|Q868N0_IXOSC Is5 OS=Ixodes scapularis PE=2 SV=1
          Length = 193

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/81 (22%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = -3

Query: 366 LLELTKKLAPISFPRVPPSAWASQLLLWKQSSLNEFDALLQN-EILQTHLASSLNIAAHN 190
           +++++ +    SFP   P+   SQ+L   ++ +N+   ++QN +  + +L S   + A  
Sbjct: 37  VIDISSEETGTSFPETTPAGVGSQILRQHKALINKIQTMIQNGKDSERNLTSLRRVVARK 96

Query: 189 ARKRSQVSLLEEIESLPKEET 127
            R+ +  +  ++++S  KE T
Sbjct: 97  MRRETNQNKRKQLQSRMKELT 117


>tr|B0G116|B0G116_DICDI NADH:flavin oxidoreductase/NADH oxidase
           domain-containing protein OS=Dictyostelium discoideum
           GN=DDB_0238145 PE=4 SV=1
          Length = 409

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +2

Query: 50  FGGGLFDGERRLLI*VVTS----WYTNSPTVSSLGRDSISSRRETWDL 181
           +GGG FDG  +LLI +V S    W T  P    +  D        WDL
Sbjct: 241 YGGGSFDGRIKLLIEIVKSVRSVWPTEKPLAVRISADEWVENENGWDL 288


>tr|B5QRW2|B5QRW2_LACRH Phosphatidylglycerophosphate synthase
           OS=Lactobacillus rhamnosus HN001 GN=LRH_09540 PE=4 SV=1
          Length = 197

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = -3

Query: 417 KNLQRSFDDYHDIVEERLLELTKKLAPISFPRVPPSAWASQLLLWKQSSLNEFDALLQNE 238
           K+L  +F  + D + ++LL +T  L   +  ++P  AW + ++LW++ ++     LL NE
Sbjct: 66  KHLVTNFGKFADPLADKLLVMTAFLFLTAAGQIP--AWGTAIILWRELAVTGLRLLLSNE 123