BP920893
Clone id YMU001_000143_A09
Library
Length 352
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTGTTGGGTATTGTACAAGGATGAGACCTGTTGTTGACACCAATTTCCCAAGATGACTCT
CAGTTAGATTCATTTCAAATTTTGGTGTTGTTCGTACCAAATATCCAGAGAGGCCGAGAG
CTAAGGCTAGCAATTTACCTTGCAAGCGTCTTGAACTTTTCTAGAGTGAGTTAGGGTTGT
TTATCCCATGTCTTCAGCACACTTGTGGGACACTGCGTACCCTACTCCTTTCTTCTTTGC
TTTTACTTTTTTTGAATGCTGGGTTTGGGGACGGGGACTTGCCACTTTCCTCCTTGTCAC
TTACTTGACTTCCCTAGGTGTCTCTTATCCTGCTAATTTGTATTCAGGTGAT
■■Homology search results ■■ -
sp_hit_id O65726
Definition sp|O65726|ERG12_BRANA Squalene monooxygenase 1,2 OS=Brassica napus
Align length 41
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920893|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_A09.
(352 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O65726|ERG12_BRANA Squalene monooxygenase 1,2 OS=Brassica nap... 31 1.7
sp|Q667W1|PUR4_YERPS Phosphoribosylformylglycinamidine synthase ... 29 8.2
sp|Q1CKD2|PUR4_YERPN Phosphoribosylformylglycinamidine synthase ... 29 8.2
sp|Q8ZCQ2|PUR4_YERPE Phosphoribosylformylglycinamidine synthase ... 29 8.2
sp|Q1C5E7|PUR4_YERPA Phosphoribosylformylglycinamidine synthase ... 29 8.2

>sp|O65726|ERG12_BRANA Squalene monooxygenase 1,2 OS=Brassica napus
GN=SQP1,2 PE=2 SV=1
Length = 518

Score = 31.2 bits (69), Expect = 1.7
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +3

Query: 33 VDTNFPR*LSVRFISNFGVVRTKYPERPRAKASNLPCKRLE 155
VDTNFP S RF N ++ +R R KAS+LP RLE
Sbjct: 135 VDTNFPYEPSGRFFHN-----GRFVQRLRQKASSLPNVRLE 170


>sp|Q667W1|PUR4_YERPS Phosphoribosylformylglycinamidine synthase
OS=Yersinia pseudotuberculosis GN=purL PE=3 SV=1
Length = 1296

Score = 28.9 bits (63), Expect = 8.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3

Query: 57 LSVRFISNFGVVRTKYPERPRAKASNL 137
+++RF++N GVV +YP P A+ +
Sbjct: 1219 VALRFVNNHGVVTEQYPANPNGSANGI 1245


>sp|Q1CKD2|PUR4_YERPN Phosphoribosylformylglycinamidine synthase
OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=purL
PE=3 SV=2
Length = 1296

Score = 28.9 bits (63), Expect = 8.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3

Query: 57 LSVRFISNFGVVRTKYPERPRAKASNL 137
+++RF++N GVV +YP P A+ +
Sbjct: 1219 VALRFVNNHGVVTEQYPANPNGSANGI 1245


>sp|Q8ZCQ2|PUR4_YERPE Phosphoribosylformylglycinamidine synthase
OS=Yersinia pestis GN=purL PE=3 SV=1
Length = 1296

Score = 28.9 bits (63), Expect = 8.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3

Query: 57 LSVRFISNFGVVRTKYPERPRAKASNL 137
+++RF++N GVV +YP P A+ +
Sbjct: 1219 VALRFVNNHGVVTEQYPANPNGSANGI 1245


>sp|Q1C5E7|PUR4_YERPA Phosphoribosylformylglycinamidine synthase
OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=purL
PE=3 SV=2
Length = 1296

Score = 28.9 bits (63), Expect = 8.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3

Query: 57 LSVRFISNFGVVRTKYPERPRAKASNL 137
+++RF++N GVV +YP P A+ +
Sbjct: 1219 VALRFVNNHGVVTEQYPANPNGSANGI 1245


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920893|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_A09.
(352 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******