BP920901
Clone id YMU001_000143_B07
Library
Length 610
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATAAAAAAACTCACCCACTCATGGCAACAAATACATATTCTTAAAAGTAGCCGTATTAGG
CCGCACATACACATAGTGTGATCTTTTTTCTTCACCAACAGATTGGGATATGTCCATGGT
GAAGAACTAGGTTGAATAAACCCTCTACTAAAGTGGAAAACAAGCTAATATTCGACATGA
ATAGCATCAGAATGACTTATTATGTAGGGGATTTGCTAATAGACTTACTACCTGCAACCA
CATTCATGTCATGTTGCACAAAATGTGTTGGTGATAACGCAAGTGGTAATTTTTGGGAGA
TACATATTTGTATTCAATTAAAACTCCTTCAATTCATTTTCTTGTTGTGGTGCCAAAGGA
GTACCAAGAGACAGAAAAGAATAGAAAGAAGCATGCGATGCTGAGGAATCTTCAACCATA
GCTGAATCGTTATCAATCTTTGATATATAAAAAATGACACAAGGTAACACAAAAAGAGCT
CTTCTATATCATTGGNAAGAAAGCTTCATAAGCTCGGTTGTACCAATCATTGACAAGGAA
AGCACATCTTTTTCTCCCAACAGTAGCTCATACACACCATTGGATTCCAACATTAGACTA
TTATGCTCAT
■■Homology search results ■■ -
sp_hit_id Q9ZQF1
Definition sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana
Align length 49
Score (bit) 30.4
E-value 7.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920901|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_B07.
(610 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protei... 30 7.5

>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial OS=Arabidopsis thaliana
GN=At2g15630 PE=2 SV=1
Length = 627

Score = 30.4 bits (67), Expect = 7.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2

Query: 206 RGFANRLTTCNHIHVMLHKMCW**RKW*FLGDTYLYSIKTPSIHFLVVV 352
+GF + TCNHI +L ++ W F D Y IK+ F +++
Sbjct: 184 KGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMI 232


tr_hit_id Q8LM00
Definition tr|Q8LM00|Q8LM00_ORYSJ Putative retroelement OS=Oryza sativa subsp. japonica
Align length 49
Score (bit) 44.3
E-value 0.0002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920901|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_B07.
(610 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8LM00|Q8LM00_ORYSJ Putative retroelement OS=Oryza sativa sub... 44 2e-04
tr|Q8S760|Q8S760_ORYSA Putative retroelement OS=Oryza sativa GN=... 44 2e-04
tr|Q10A24|Q10A24_ORYSJ Retrotransposon protein, putative, Ty3-gy... 44 2e-04
tr|Q53KP3|Q53KP3_ORYSJ Retrotransposon protein, putative, Ty3-gy... 44 2e-04
tr|Q109V2|Q109V2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 44 2e-04
tr|Q8W5E8|Q8W5E8_ORYSA Putative polyprotein OS=Oryza sativa GN=O... 44 2e-04
tr|Q7G654|Q7G654_ORYSJ Putative polyprotein OS=Oryza sativa subs... 44 2e-04
tr|Q2QLU9|Q2QLU9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 44 2e-04
tr|Q7XKY8|Q7XKY8_ORYSJ OSJNBa0022F16.16 protein OS=Oryza sativa ... 43 7e-04
tr|Q7XUI0|Q7XUI0_ORYSJ OSJNBa0020J04.2 protein OS=Oryza sativa s... 43 0.002
tr|Q53J71|Q53J71_ORYSJ Retrotransposon protein, putative, Ty3-gy... 46 0.002
tr|Q53J31|Q53J31_ORYSJ Retrotransposon protein, putative, Ty3-gy... 46 0.002
tr|Q2QUJ5|Q2QUJ5_ORYSJ Retrotransposon protein, putative, Ty3-gy... 46 0.002
tr|Q2QPZ1|Q2QPZ1_ORYSJ Retrotransposon protein, putative, Ty3-gy... 46 0.002
tr|Q01MC0|Q01MC0_ORYSA OSIGBa0114I04.2 protein OS=Oryza sativa G... 46 0.002
tr|Q53MS2|Q53MS2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 43 0.002
tr|Q53PJ3|Q53PJ3_ORYSJ Retrotransposon protein, putative, Ty3-gy... 45 0.003
tr|Q7XXI2|Q7XXI2_ORYSJ OSJNBa0059H15.7 protein OS=Oryza sativa s... 43 0.003
tr|Q65WS7|Q65WS7_ORYSJ Putative polyprotein OS=Oryza sativa subs... 45 0.003
tr|Q25AH6|Q25AH6_ORYSA H0124E07.7 protein OS=Oryza sativa GN=H01... 45 0.004
tr|Q01MA8|Q01MA8_ORYSA OSIGBa0101K10.6 protein OS=Oryza sativa G... 45 0.004
tr|Q109N9|Q109N9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 40 0.005
tr|Q9AYB5|Q9AYB5_ORYSA Similar to Transposon MAGGYgagandpolgeneh... 44 0.006
tr|Q94H22|Q94H22_ORYSA Putative polyprotein OS=Oryza sativa GN=O... 44 0.006
tr|Q8SB03|Q8SB03_ORYSA Putative polyprotein OS=Oryza sativa GN=O... 44 0.006
tr|Q8S669|Q8S669_ORYSJ Putative polyprotein OS=Oryza sativa subs... 44 0.006
tr|Q8S644|Q8S644_ORYSJ Putative polyprotein OS=Oryza sativa subs... 44 0.006
tr|Q8RV09|Q8RV09_ORYSJ Putative polyprotein (Retrotransposon pro... 44 0.006
tr|Q8LMV8|Q8LMV8_ORYSJ Putative polyprotein (Retrotransposon pro... 44 0.006
tr|Q8LMA6|Q8LMA6_ORYSJ Putative retroelement (Retrotransposon pr... 44 0.006

>tr|Q8LM00|Q8LM00_ORYSJ Putative retroelement OS=Oryza sativa subsp.
japonica GN=OSJNAb0015J03.23 PE=4 SV=1
Length = 1523

Score = 44.3 bits (103), Expect(2) = 2e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3

Query: 209 PYIISHSDAIHVEY*LVFHFSRGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
PY ++ ++ V+ + +G+I+PSSSPW P + V+KKDHT MC
Sbjct: 763 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 811



Score = 23.5 bits (49), Expect(2) = 2e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 818 NNVTIKNKYLLPRIDDLF 835


>tr|Q8S760|Q8S760_ORYSA Putative retroelement OS=Oryza sativa
GN=OSJNBb0081F12.7 PE=4 SV=1
Length = 1496

Score = 44.3 bits (103), Expect(2) = 2e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3

Query: 209 PYIISHSDAIHVEY*LVFHFSRGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
PY ++ ++ V+ + +G+I+PSSSPW P + V+KKDHT MC
Sbjct: 734 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 782



Score = 23.5 bits (49), Expect(2) = 2e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 789 NNVTIKNKYLLPRIDDLF 806


>tr|Q10A24|Q10A24_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g08702 PE=4 SV=1
Length = 1251

Score = 44.3 bits (103), Expect(2) = 2e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3

Query: 209 PYIISHSDAIHVEY*LVFHFSRGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
PY ++ ++ V+ + +G+I+PSSSPW P + V+KKDHT MC
Sbjct: 491 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 539



Score = 23.5 bits (49), Expect(2) = 2e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 546 NNVTIKNKYLLPRIDDLF 563


>tr|Q53KP3|Q53KP3_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g15560 PE=4 SV=1
Length = 1686

Score = 44.3 bits (103), Expect(2) = 2e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3

Query: 209 PYIISHSDAIHVEY*LVFHFSRGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
PY ++ ++ V+ + +G+I+PSSSPW P + V+KKDHT MC
Sbjct: 792 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPIIFVEKKDHTQRMC 840



Score = 23.1 bits (48), Expect(2) = 2e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 847 NDVTIKNKYLLPRIDDLF 864


>tr|Q109V2|Q109V2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g18294 PE=4 SV=1
Length = 1683

Score = 44.3 bits (103), Expect(2) = 2e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3

Query: 209 PYIISHSDAIHVEY*LVFHFSRGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
PY ++ ++ V+ + +G+I+PSSSPW P + V+KKDHT MC
Sbjct: 775 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 823



Score = 23.1 bits (48), Expect(2) = 2e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 830 NDVTIKNKYLLPRIDDLF 847


>tr|Q8W5E8|Q8W5E8_ORYSA Putative polyprotein OS=Oryza sativa
GN=OSJNBb0008A05.16 PE=4 SV=1
Length = 1416

Score = 44.3 bits (103), Expect(2) = 2e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3

Query: 209 PYIISHSDAIHVEY*LVFHFSRGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
PY ++ ++ V+ + +G+I+PSSSPW P + V+KKDHT MC
Sbjct: 508 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 556



Score = 23.1 bits (48), Expect(2) = 2e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 563 NDVTIKNKYLLPRIDDLF 580


>tr|Q7G654|Q7G654_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
japonica GN=OSJNAb0008A05.3 PE=4 SV=1
Length = 1416

Score = 44.3 bits (103), Expect(2) = 2e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3

Query: 209 PYIISHSDAIHVEY*LVFHFSRGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
PY ++ ++ V+ + +G+I+PSSSPW P + V+KKDHT MC
Sbjct: 508 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 556



Score = 23.1 bits (48), Expect(2) = 2e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 563 NDVTIKNKYLLPRIDDLF 580


>tr|Q2QLU9|Q2QLU9_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g43230 PE=4 SV=1
Length = 1307

Score = 44.3 bits (103), Expect(2) = 2e-04
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -3

Query: 209 PYIISHSDAIHVEY*LVFHFSRGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
PY ++ ++ V+ + +G+I+PSSSPW P + V+KKDHT MC
Sbjct: 516 PYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVEKKDHTQRMC 564



Score = 23.1 bits (48), Expect(2) = 2e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 571 NDVTIKNKYLLPRIDDLF 588


>tr|Q7XKY8|Q7XKY8_ORYSJ OSJNBa0022F16.16 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0022F16.16 PE=4 SV=1
Length = 1402

Score = 42.7 bits (99), Expect(2) = 7e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -3

Query: 146 RGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
+GF++PSSSPW P L VKKKD +M MC
Sbjct: 503 KGFVRPSSSPWGAPVLFVKKKDGSMRMC 530



Score = 23.1 bits (48), Expect(2) = 7e-04
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + + F
Sbjct: 537 NEVTIKNKYLLPRIDDLF 554


>tr|Q7XUI0|Q7XUI0_ORYSJ OSJNBa0020J04.2 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0020J04.2 PE=4 SV=2
Length = 1537

Score = 42.7 bits (99), Expect(2) = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -3

Query: 146 RGFIQPSSSPWTYPNLLVKKKDHTMCMC 63
+GF++PSSSPW P L VKKKD +M MC
Sbjct: 503 KGFVRPSSSPWGAPVLFVKKKDGSMRMC 530



Score = 21.6 bits (44), Expect(2) = 0.002
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2

Query: 57 NTATFKNMYLLP*VGEFF 4
N T KN YLLP + F
Sbjct: 537 NEVTIKNKYLLPRFDDLF 554