BP920914
Clone id YMU001_000143_C09
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CGCGTACGGAGAGCGGGTAGATAGGAAAGATAGAGAGAGAGATAGATGAGGTTTGTGGAC
AGCCATACAGAGGCTTGCAGGAGAGCTCTCAAGAGCTTCCTAGTGCTCACAGATCAGAGT
TCCTCTACAGATCAGCCTACAGTGTACATCATTTTCCCTCTTCGGGCAAGCTTTGCAACG
GCTACATCGGCGACAGGTTGGAGCTTGGAGCATCCATAGACATGGAAGCATTGTGAGATT
GATGCATTCAGCTCACGCATCGAGGTGGGAAGTGAGTTTGAGCCTTTCTATGAGCTCAAA
GAAGCACAAAAGAAAGTCGTTCAGTTTTTTGGCAGTTTGACAGCAGTCTACTGTTTTGCT
CATAACTTGAGCTACAGAGCTTCGATTCCAAAACTTTTTGGTTCAAAACGGAGCTGGCTT
TGAGCTCTACGACTTTGTAGAAGGAATCGTTTTCTGATTCGGAGTGCAAGTGGGTCTGAA
ATTAAAAACACAGAGACTGTTTTTCATGACAGTTTTGGGCTCTGTTGTTTTCTTTACTGC
AGACAGCTTACCCGTGTACACTGCAGGTAGCAGGCACATATG
■■Homology search results ■■ -
sp_hit_id P42500
Definition sp|P42500|PHYA_SOYBN Phytochrome A OS=Glycine max
Align length 36
Score (bit) 31.2
E-value 3.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920914|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_C09.
(582 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P42500|PHYA_SOYBN Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1 31 3.9
sp|P39141|NUPC_BACSU Pyrimidine nucleoside transport protein OS=... 31 5.1
sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1 31 5.2
sp|Q9H714|CM018_HUMAN Uncharacterized protein C13orf18 OS=Homo s... 31 5.2

>sp|P42500|PHYA_SOYBN Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1
Length = 1131

Score = 31.2 bits (69), Expect = 3.9
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3

Query: 24 GKIEREIDEVCGQPYRGLQESSQELPSAHRSEFLYR 131
G++ REI + C +PY GL + ++P A S FL+R
Sbjct: 249 GEVIREITKPCLEPYLGLHYPATDIPQA--SRFLFR 282


>sp|P39141|NUPC_BACSU Pyrimidine nucleoside transport protein
OS=Bacillus subtilis GN=nupC PE=3 SV=3
Length = 393

Score = 30.8 bits (68), Expect = 5.1
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2

Query: 392 NFLV---QNGAGFELYDFVEGIVF*FGVQVGLKLKTQRLFFMTVLGSVVFFTA 541
NFLV G G+ L EGI F FG GL Q FFM VL +VF +A
Sbjct: 53 NFLVGGFAKGFGYLLEYAAEGINFVFG---GLVNADQTTFFMNVLLPIVFISA 102


>sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=2 SV=1
Length = 2907

Score = 30.8 bits (68), Expect = 5.2
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Frame = -1

Query: 246 CINLTMLPCLWMLQAPTCRRCSRCKACPKRENDVHCR-----LICRGTLICEH*EALESS 82
CI C++ P C R R C + N+ C+ ++C TL C
Sbjct: 190 CIGPNRCACVYGFTGPQCERDYRTGPCFTQVNNQMCQGQLTGIVCTKTLCCATIGRAWGH 249

Query: 81 PASLCMAVHKP 49
P +C A +P
Sbjct: 250 PCEMCPAQPQP 260


>sp|Q9H714|CM018_HUMAN Uncharacterized protein C13orf18 OS=Homo
sapiens GN=C13orf18 PE=2 SV=3
Length = 662

Score = 30.8 bits (68), Expect = 5.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1

Query: 246 CINLTMLPCLWMLQAPTCRRCSRCKAC 166
C N T++ + Q TCRRCS C+AC
Sbjct: 607 CQNTTVI---FPFQTATCRRCSACRAC 630


tr_hit_id B3VKY6
Definition tr|B3VKY6|B3VKY6_MOUSE CRS4C-3f (Fragment) OS=Mus musculus
Align length 20
Score (bit) 33.5
E-value 9.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920914|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_C09.
(582 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3VKY6|B3VKY6_MOUSE CRS4C-3f (Fragment) OS=Mus musculus PE=2 ... 33 9.0
tr|B4L4X9|B4L4X9_DROMO GI14771 OS=Drosophila mojavensis GN=GI147... 33 9.0

>tr|B3VKY6|B3VKY6_MOUSE CRS4C-3f (Fragment) OS=Mus musculus PE=2
SV=1
Length = 38

Score = 33.5 bits (75), Expect = 9.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1

Query: 222 CLWMLQAPTCRRCSRCKACP 163
C W P CRRC RC CP
Sbjct: 12 CPWCPPCPNCRRCPRCPTCP 31


>tr|B4L4X9|B4L4X9_DROMO GI14771 OS=Drosophila mojavensis GN=GI14771
PE=4 SV=1
Length = 1027

Score = 33.5 bits (75), Expect = 9.0
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = -1

Query: 219 LWMLQAPTCRRCSRCKACPKRENDVHCRLICRGTLIC---EH*EALESSPASLCMAVHKP 49
+W+ A C+ C+ C C K+ C C+ +C ++ ++ ++P++L MAV+KP
Sbjct: 741 IWLKDAMQCKDCTMC--CHKK-----CIAKCQSATVCGPVDYGGSIPNTPSTLSMAVNKP 793