NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920917
Clone id YMU001_000143_D02
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGAAGACACAGTGGTAGAACAAGGTGGAGAGGTGGTGATTGCAGCCAAAGGCACTCGGGG
TGGCCTCAATGAGAAACTTTCTATGAAAGTGGCAGTGCCACTACTGTGGGGGGTGCCGCC
AGCAGTTGACTCGCTAAATTATGCCATACGCTGTGGGGGTGGTATCGTTGAGAAGGTGTC
TCGCCAATGGGAATTCTTGTGACGCACTATGTGCTTTGCAGACGCATAGATGCACCATGT
GTTGATGTTGATCATTATTTGTAGATTTTGTATATAATTCTTTTATTGTCCATACACTTG
TTGTAATAACAATTACTACCACATAGGCCCTTTTGAACCCCTTGTCATGGCCATGCCAGG
CAAAGTTTCCTCTTGTGCTTCCAAGGAGTGCAGGGATACTAGTACACGGTTGTTTCATCA
TTCAAATGCGGCCAATTGGGTCCCAAACTAGTTGCTTTGCTAATTCAATGTTACCAGAGA
ACATCCATAT
■■Homology search results ■■ -
sp_hit_id Q5XI50
Definition sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus
Align length 54
Score (bit) 30.4
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920917|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_D02.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus...    30   4.5  
sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus ...    30   4.5  

>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus
           norvegicus GN=March7 PE=2 SV=1
          Length = 692

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/54 (35%), Positives = 21/54 (38%)
 Frame = +1

Query: 16  RTRWRGGDCSQRHSGWPQ*ETFYESGSATTVGGAASS*LAKLCHTLWGWYR*EG 177
           R RW     SQ HS  P  E F +       G   SS L   C  L+   R EG
Sbjct: 352 RRRWGLSSLSQNHSSEPDAENFNQESEGRNTGPWLSSSLRNRCTPLFSRRRREG 405


>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus
           musculus GN=March7 PE=2 SV=1
          Length = 693

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +1

Query: 16  RTRWRGGDCSQRHSGWPQ*ETFYESGSATTVGGAASS*LAKLCHTLWGWYR*EG 177
           R RW     SQ HS  P+ E F +       G   SS L   C  L+   R EG
Sbjct: 353 RRRWGLSSLSQNHSSEPEAENFNQESEGRNSGPWLSSSLRNRCTPLFSRRRREG 406
tr_hit_id A9RKS9
Definition tr|A9RKS9|A9RKS9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 66
Score (bit) 101.0
E-value 2.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920917|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_D02.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RKS9|A9RKS9_PHYPA Predicted protein (Fragment) OS=Physcomit...   101   2e-20
tr|A7QJG6|A7QJG6_VITVI Chromosome chr8 scaffold_106, whole genom...    97   3e-19
tr|Q10RN3|Q10RN3_ORYSJ Os03g0152600 protein OS=Oryza sativa subs...    91   3e-17
tr|B8AND6|B8AND6_ORYSI Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|A3AE79|A3AE79_ORYSJ Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|Q8L771|Q8L771_ARATH Putative uncharacterized protein (Putativ...    85   2e-15
tr|A8MSG0|A8MSG0_ARATH Uncharacterized protein At2g36895.2 OS=Ar...    85   2e-15
tr|A8JC53|A8JC53_CHLRE Predicted protein OS=Chlamydomonas reinha...    69   2e-10
tr|Q72ED7|Q72ED7_DESVH Putative uncharacterized protein OS=Desul...    35   1.9  
tr|A1VFW8|A1VFW8_DESVV Putative uncharacterized protein OS=Desul...    35   1.9  

>tr|A9RKS9|A9RKS9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115793 PE=4 SV=1
          Length = 158

 Score =  101 bits (251), Expect = 2e-20
 Identities = 48/66 (72%), Positives = 55/66 (83%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGIVEKVS 181
           EDTV++ GGEVVIA K T  GL+EKL+M V +PLLWGVPPAVD+LNYAIR GGGIVEK  
Sbjct: 93  EDTVLDLGGEVVIAEKATTEGLHEKLTMMVVMPLLWGVPPAVDTLNYAIRSGGGIVEKTY 152

Query: 182 RQWEFL 199
           +QW FL
Sbjct: 153 KQWHFL 158


>tr|A7QJG6|A7QJG6_VITVI Chromosome chr8 scaffold_106, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000630001
           PE=4 SV=1
          Length = 232

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 45/66 (68%), Positives = 56/66 (84%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGIVEKVS 181
           EDTV+E GGEVV A K ++GGL+EKL+M VAVPLLWGVPPA ++L+ A+R GGGIVEK+ 
Sbjct: 167 EDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPLLWGVPPASETLHLAVRSGGGIVEKIY 226

Query: 182 RQWEFL 199
            QW+FL
Sbjct: 227 WQWDFL 232


>tr|Q10RN3|Q10RN3_ORYSJ Os03g0152600 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0152600 PE=4 SV=1
          Length = 239

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 42/64 (65%), Positives = 52/64 (81%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGIVEKVS 181
           EDTV+E GGEVV A K ++ GL EKL+M VAVPLLWGVPPA ++L+ A+R GGGIVEK+ 
Sbjct: 174 EDTVLEHGGEVVTAEKASKDGLQEKLTMSVAVPLLWGVPPASETLHVAVRSGGGIVEKIY 233

Query: 182 RQWE 193
            QW+
Sbjct: 234 WQWD 237


>tr|B8AND6|B8AND6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10055 PE=4 SV=1
          Length = 239

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 42/64 (65%), Positives = 52/64 (81%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGIVEKVS 181
           EDTV+E GGEVV A K ++ GL EKL+M VAVPLLWGVPPA ++L+ A+R GGGIVEK+ 
Sbjct: 174 EDTVLEHGGEVVTAEKASKDGLQEKLTMSVAVPLLWGVPPASETLHVAVRSGGGIVEKIY 233

Query: 182 RQWE 193
            QW+
Sbjct: 234 WQWD 237


>tr|A3AE79|A3AE79_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009101 PE=4 SV=1
          Length = 229

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 42/64 (65%), Positives = 52/64 (81%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGIVEKVS 181
           EDTV+E GGEVV A K ++ GL EKL+M VAVPLLWGVPPA ++L+ A+R GGGIVEK+ 
Sbjct: 164 EDTVLEHGGEVVTAEKASKDGLQEKLTMSVAVPLLWGVPPASETLHVAVRSGGGIVEKIY 223

Query: 182 RQWE 193
            QW+
Sbjct: 224 WQWD 227


>tr|Q8L771|Q8L771_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein not annotated) OS=Arabidopsis
           thaliana GN=not annotated PE=2 SV=1
          Length = 232

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGIVEKVS 181
           EDTV+E GGE+V     +  GL EKL+M VAVP LWGVPPA + L+ A+R GGGIV+KV 
Sbjct: 167 EDTVLEHGGEIVATETESTSGLQEKLTMTVAVPYLWGVPPAAERLHLAVRTGGGIVDKVY 226

Query: 182 RQWEFL 199
            QW FL
Sbjct: 227 WQWHFL 232


>tr|A8MSG0|A8MSG0_ARATH Uncharacterized protein At2g36895.2
           OS=Arabidopsis thaliana GN=At2g36895 PE=4 SV=1
          Length = 231

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGIVEKVS 181
           EDTV+E GGE+V     +  GL EKL+M VAVP LWGVPPA + L+ A+R GGGIV+KV 
Sbjct: 166 EDTVLEHGGEIVATETESTSGLQEKLTMTVAVPYLWGVPPAAERLHLAVRTGGGIVDKVY 225

Query: 182 RQWEFL 199
            QW FL
Sbjct: 226 WQWHFL 231


>tr|A8JC53|A8JC53_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_159567 PE=4 SV=1
          Length = 196

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 33/58 (56%), Positives = 43/58 (74%)
 Frame = +2

Query: 17  EQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGIVEKVSRQW 190
           E GGEV++  +  + GL+E L+M VAVPLL+GVPP +D LN AIR GGGIV++V   W
Sbjct: 134 ELGGEVLMQERQLKSGLHEVLNMTVAVPLLFGVPPQLDVLNEAIRSGGGIVDRVRHVW 191


>tr|Q72ED7|Q72ED7_DESVH Putative uncharacterized protein
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=DVU_0641 PE=4 SV=1
          Length = 382

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGI 166
           E+ +V  G  VV++       +    S++VA  L+ G+  A DS+    R GGG+
Sbjct: 196 ENAIVHAGSHVVVSGSSLHNEIKSNASVQVAERLIGGMTAARDSITVGERLGGGM 250


>tr|A1VFW8|A1VFW8_DESVV Putative uncharacterized protein
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=Dvul_2318 PE=4 SV=1
          Length = 371

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 2   EDTVVEQGGEVVIAAKGTRGGLNEKLSMKVAVPLLWGVPPAVDSLNYAIRCGGGI 166
           E+ +V  G  VV++       +    S++VA  L+ G+  A DS+    R GGG+
Sbjct: 185 ENAIVHAGSHVVVSGSSLHNEIKSNASVQVAERLIGGMTAARDSITVGERLGGGM 239