BP920918 |
Clone id |
YMU001_000143_D03 |
Library |
YMU01 |
Length |
452 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000143_D03. |
Accession |
BP920918 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGTTGAAGCTGCAGGTAAGCATAGAGCTCTTCTCAAACACGTCAATGTGCACATGTCCCA CATGGCAGAGCCACCGAAGGAGAGGGTGATTCATCTTGAATAGGAAACCCCAGCAACAGA AACAACAGTAAAAGATGAGAAGCTCGTGTGGCCTTGGATGGGAGTCATTGTGAACATTGA TAACAGTAAGGTAGTCAATGGGAAGGGGGTAGGCCCTGAAGACAATGAGATCAAGACTCG ATTCTCACGCTTCCATCCCAAATGTGTAAACACAAAGTGGAATTTTCACGGGCATCAAGG CATTGCAATCCTGGAGTACGAAAACGACATGATTGGGTATGGTGATGCACAGGATTTTGA GAGAAGCTTTTTGGAATGTGGCAGGGGGAGAAGAGAGTGGGAGCGAAGAGCTGCATCTGT TGAAGGCCCAGGTAAAGAGCTCTATGGATGGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LDX1 |
Definition |
sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana |
Align length |
107 |
Score (bit) |
51.2 |
E-value |
2.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TYL4 |
Definition |
tr|A9TYL4|A9TYL4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
150 |
Score (bit) |
98.6 |
E-value |
1.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920918|Adiantum capillus-veneris mRNA, clone: YMU001_000143_D03. (452 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TYL4|A9TYL4_PHYPA Predicted protein OS=Physcomitrella paten... 99 1e-19 tr|A9TH05|A9TH05_PHYPA Predicted protein OS=Physcomitrella paten... 88 2e-16 tr|A9SBT8|A9SBT8_PHYPA Predicted protein OS=Physcomitrella paten... 84 3e-15 tr|O48878|O48878_SORBI Gene X-like protein OS=Sorghum bicolor PE... 82 1e-14 tr|Q8LSJ9|Q8LSJ9_MAIZE Putative uncharacterized protein OS=Zea m... 81 3e-14 tr|Q3T7E6|Q3T7E6_ZEAMM X1 (Fragment) OS=Zea mays subsp. mexicana... 81 3e-14 tr|Q3T7E5|Q3T7E5_ZEAMP X1 (Fragment) OS=Zea mays subsp. parviglu... 81 3e-14 tr|Q3T7E4|Q3T7E4_ZEALU X1 (Fragment) OS=Zea luxurians GN=x1 PE=4... 80 4e-14 tr|Q8W563|Q8W563_TRIMO Putative transcription factor X1 OS=Triti... 79 9e-14 tr|Q9SBW2|Q9SBW2_ORYSJ cDNA clone:J023007G13, full insert sequen... 78 3e-13 tr|B8ACA9|B8ACA9_ORYSI Putative uncharacterized protein OS=Oryza... 78 3e-13 tr|A2ZVQ8|A2ZVQ8_ORYSJ Putative uncharacterized protein OS=Oryza... 78 3e-13 tr|A7NYZ4|A7NYZ4_VITVI Chromosome chr6 scaffold_3, whole genome ... 75 2e-12 tr|A5BZJ4|A5BZJ4_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12 tr|Q7F761|Q7F761_ORYSJ Putative transcription factor OS=Oryza sa... 70 7e-11 tr|B8AD15|B8AD15_ORYSI Putative uncharacterized protein OS=Oryza... 70 7e-11 tr|A2ZNT2|A2ZNT2_ORYSJ Putative uncharacterized protein OS=Oryza... 70 7e-11 tr|Q9SMN2|Q9SMN2_ARATH Putative uncharacterized protein T8P19.18... 69 2e-10 tr|Q8VZ79|Q8VZ79_ARATH Putative uncharacterized protein At3g4867... 69 2e-10 tr|Q9LTJ0|Q9LTJ0_ARATH Transcription regulator-like OS=Arabidops... 68 2e-10 tr|A7QLB6|A7QLB6_VITVI Chromosome chr11 scaffold_118, whole geno... 68 3e-10 tr|A5BSI8|A5BSI8_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10 tr|A5AP13|A5AP13_VITVI Putative uncharacterized protein OS=Vitis... 67 6e-10 tr|Q9LHB1|Q9LHB1_ARATH Transcription factor X1-like protein OS=A... 66 1e-09 tr|Q9C7B0|Q9C7B0_ARATH Putative uncharacterized protein T2E22.14... 66 1e-09 tr|B8ALP9|B8ALP9_ORYSI Putative uncharacterized protein OS=Oryza... 65 1e-09 tr|Q84TY3|Q84TY3_ORYSJ Putative XS domain containing protein (Re... 65 2e-09 tr|A3AK46|A3AK46_ORYSJ Putative uncharacterized protein OS=Oryza... 65 2e-09 tr|Q9M150|Q9M150_ARATH Putative uncharacterized protein AT4g0118... 64 5e-09 tr|O04614|O04614_ARATH A_IG002N01.10 protein OS=Arabidopsis thal... 64 5e-09
>tr|A9TYL4|A9TYL4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_98999 PE=4 SV=1 Length = 694
Score = 98.6 bits (244), Expect = 1e-19 Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 2/150 (1%) Frame = +2
Query: 8 AAGKHRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTVKDEKLVWPWMGVIVNIDNS 187 AAG HRAL K++ M+ A P ERVIHL+ E P+ D+K V PWMG++ NIDN Sbjct: 73 AAGNHRALQKYLEQDMAARAHPQAERVIHLQQEVPSRVDN--DDKRVRPWMGILQNIDNR 130
Query: 188 --KVVNGKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFE 361 + + +GP +IK F+P+ V +++ GH G+A++ + N M G+ DA+ FE Sbjct: 131 TRRPADQFRIGPGAADIKEHLRAFNPESVKVLYDYKGHLGMAVVGFRNTMDGFKDAEAFE 190
Query: 362 RSFLECXXXXXXXXXXXXSVEGPGKELYGW 451 SF C G+ LYGW Sbjct: 191 NSF--CLKRRGRKDFEMNYPHALGEHLYGW 218
>tr|A9TH05|A9TH05_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_92657 PE=4 SV=1 Length = 707
Score = 87.8 bits (216), Expect = 2e-16 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Frame = +2
Query: 11 AGKHRALLKHVNVHMSHMAEPPK-ERVIHLE*ETPATETTVKDEKLVWPWMGVIVNIDNS 187 AG HRA++K++ + P+ ER+++L+ P + + +L+ PWMG++VNIDNS Sbjct: 132 AGGHRAVMKYLLAELGDRPMIPQAERILYLDQVVPKRKG--RATRLLAPWMGILVNIDNS 189
Query: 188 KV-VNGKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFER 364 + NG + P EIK +F + P+ V+ +F GHQG A+L + +D+ G DAQ FE Sbjct: 190 RTNENGFRLAPGPAEIKEKFKEYKPERVDVFHDFRGHQGTALLTFRSDIRGLEDAQAFEH 249
Query: 365 SFLECXXXXXXXXXXXXSVEGPGKELYGW 451 SF S ++LYGW Sbjct: 250 SFAATNRGRKAWWEEARSA---NRDLYGW 275
>tr|A9SBT8|A9SBT8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_77236 PE=4 SV=1 Length = 328
Score = 84.3 bits (207), Expect = 3e-15 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 4/152 (2%) Frame = +2
Query: 8 AAGKHRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTVKDEK-LVWPWMGVIVNIDN 184 AAG+HRAL +++ ++ A+P ER +HL+ + +EK + +PWMG++ NIDN Sbjct: 78 AAGQHRALREYLEKDVAARAQPQAERPLHLQLQQNVPCRVDSEEKRMFYPWMGILQNIDN 137
Query: 185 SKV--VNGKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDF 358 + +G +GP +IK + F+P+ + + GH G+ I+ + + M G+ DA +F Sbjct: 138 RTISPTDGSRIGPCAADIKEKLKAFNPRSIKVMHDDGGHLGVVIIGFRSSMDGFKDAVEF 197
Query: 359 ERSFLECXXXXXXXXXXXXSVEG-PGKELYGW 451 E SF S G G +LYGW Sbjct: 198 ENSFNN--VRQGRWDFERDSPNGYTGTQLYGW 227
>tr|O48878|O48878_SORBI Gene X-like protein OS=Sorghum bicolor PE=4 SV=1 Length = 895
Score = 82.0 bits (201), Expect = 1e-14 Identities = 49/144 (34%), Positives = 74/144 (51%) Frame = +2
Query: 20 HRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTVKDEKLVWPWMGVIVNIDNSKVVN 199 HRAL K++ ++ +EP + VI +E + +DEK VWPWMG++VN+ ++ + Sbjct: 53 HRALFKYLKNDLAKSSEP-QPLVIPVEPQPLQN----RDEKFVWPWMGILVNVP-TEWKD 106
Query: 200 GKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFERSFLEC 379 G+ +G N +K + S F P V W F GH G AI+E+ D G+ +A+ FE F Sbjct: 107 GRQIGESGNRLKEQLSHFCPLKVIPLWTFRGHTGNAIVEFGKDWNGFRNARTFESHF--- 163
Query: 380 XXXXXXXXXXXXSVEGPGKELYGW 451 + G ELYGW Sbjct: 164 -AAGGFGKKDWTGKKNQGSELYGW 186
>tr|Q8LSJ9|Q8LSJ9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 628
Score = 80.9 bits (198), Expect = 3e-14 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 2/146 (1%) Frame = +2
Query: 20 HRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTV--KDEKLVWPWMGVIVNIDNSKV 193 HRAL K++ ++ EP TP + +DEK VWPWMGV+VN+ ++ Sbjct: 79 HRALFKYLKNGLAKSPEPGSHA-------TPVEPQPLQNRDEKFVWPWMGVLVNVP-TEW 130
Query: 194 VNGKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFERSFL 373 +G+ +G N +K + S F P V W F GH G AI+E+ D G+ +A+ FE F Sbjct: 131 KDGRQIGESGNRLKEQLSHFCPLRVIPLWTFRGHTGNAIVEFGKDWNGFRNARTFESHF- 189
Query: 374 ECXXXXXXXXXXXXSVEGPGKELYGW 451 + G ELYGW Sbjct: 190 ---AAGGFGKKDWIGKKNQGSELYGW 212
>tr|Q3T7E6|Q3T7E6_ZEAMM X1 (Fragment) OS=Zea mays subsp. mexicana GN=x1 PE=4 SV=1 Length = 550
Score = 80.9 bits (198), Expect = 3e-14 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 2/146 (1%) Frame = +2
Query: 20 HRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTV--KDEKLVWPWMGVIVNIDNSKV 193 HRAL K++ ++ EP TP + +DEK VWPWMGV+VN+ ++ Sbjct: 1 HRALFKYLKNGLAKSPEPGSHA-------TPVEPQPLQNRDEKFVWPWMGVLVNVP-TEW 52
Query: 194 VNGKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFERSFL 373 +G+ +G N +K + S F P V W F GH G AI+E+ D G+ +A+ FE F Sbjct: 53 KDGRQIGESGNRLKEQLSHFCPLRVIPLWTFRGHTGNAIVEFGKDWNGFRNARTFESHF- 111
Query: 374 ECXXXXXXXXXXXXSVEGPGKELYGW 451 + G ELYGW Sbjct: 112 ---AAGGFGKKDWIGKKNQGSELYGW 134
>tr|Q3T7E5|Q3T7E5_ZEAMP X1 (Fragment) OS=Zea mays subsp. parviglumis GN=x1 PE=4 SV=1 Length = 550
Score = 80.9 bits (198), Expect = 3e-14 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 2/146 (1%) Frame = +2
Query: 20 HRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTV--KDEKLVWPWMGVIVNIDNSKV 193 HRAL K++ ++ EP TP + +DEK VWPWMGV+VN+ ++ Sbjct: 1 HRALFKYLKNGLAKSPEPGSHA-------TPVEPQPLQNRDEKFVWPWMGVLVNVP-TEW 52
Query: 194 VNGKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFERSFL 373 +G+ +G N +K + S F P V W F GH G AI+E+ D G+ +A+ FE F Sbjct: 53 KDGRQIGESGNRLKEQLSHFCPLRVIPLWTFRGHTGNAIVEFGKDWNGFRNARTFESHF- 111
Query: 374 ECXXXXXXXXXXXXSVEGPGKELYGW 451 + G ELYGW Sbjct: 112 ---AAGGFGKKDWIGKKNQGSELYGW 134
>tr|Q3T7E4|Q3T7E4_ZEALU X1 (Fragment) OS=Zea luxurians GN=x1 PE=4 SV=1 Length = 550
Score = 80.5 bits (197), Expect = 4e-14 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 2/146 (1%) Frame = +2
Query: 20 HRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTV--KDEKLVWPWMGVIVNIDNSKV 193 HRAL K++ ++ EP TP + +DEK VWPWMGV+VN+ ++ Sbjct: 1 HRALFKYLKNGLAKSPEPGSHA-------TPVEPQPLQNRDEKFVWPWMGVLVNVP-TEW 52
Query: 194 VNGKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFERSFL 373 +G+ +G N +K + S F P V W F GH G AI+E+ D G+ +A+ FE F Sbjct: 53 KDGRQIGESGNRLKEQLSHFCPLRVIPLWTFRGHTGNAIVEFGKDWNGFRNARTFEGHF- 111
Query: 374 ECXXXXXXXXXXXXSVEGPGKELYGW 451 + G ELYGW Sbjct: 112 ---AAGGFGKKDWIGKKNQGSELYGW 134
>tr|Q8W563|Q8W563_TRIMO Putative transcription factor X1 OS=Triticum monococcum PE=4 SV=2 Length = 639
Score = 79.3 bits (194), Expect = 9e-14 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 6/123 (4%) Frame = +2
Query: 20 HRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTV------KDEKLVWPWMGVIVNID 181 HRAL KH+ ++ ++P + + I +E + P + + EK VWPWMGV+VN+ Sbjct: 79 HRALAKHLKNGVAKPSDPQQAQQIAVEPQQPQQISVEPQPLPNRHEKFVWPWMGVLVNVP 138
Query: 182 NSKVVNGKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFE 361 ++ +G+ VG N +K S+F P V WNF GH G AI+E+ + G+ +A FE Sbjct: 139 -TEWKDGRQVGESGNRLKGELSQFCPLKVIPLWNFRGHTGNAIVEFAKNWNGFRNALAFE 197
Query: 362 RSF 370 + F Sbjct: 198 KYF 200
>tr|Q9SBW2|Q9SBW2_ORYSJ cDNA clone:J023007G13, full insert sequence OS=Oryza sativa subsp. japonica GN=Os01g0633200 PE=2 SV=1 Length = 629
Score = 77.8 bits (190), Expect = 3e-13 Identities = 46/144 (31%), Positives = 69/144 (47%) Frame = +2
Query: 20 HRALLKHVNVHMSHMAEPPKERVIHLE*ETPATETTVKDEKLVWPWMGVIVNIDNSKVVN 199 HRAL KH+ ++ + + + P +DEK VWPWMGV+VN+ ++ + Sbjct: 79 HRALAKHLKNGLTKSSGQQSQTAVVEPQPLPN-----RDEKFVWPWMGVLVNVP-TEWKD 132
Query: 200 GKGVGPEDNEIKTRFSRFHPKCVNTKWNFHGHQGIAILEYENDMIGYGDAQDFERSFLEC 379 G+ +G N +K + SRF P + WNF GH G AI+E+ D G+ +A FE F Sbjct: 133 GRQIGRSGNHLKEQLSRFCPLKIIPLWNFRGHSGNAIVEFGKDWHGFRNALAFEDYF--- 189
Query: 380 XXXXXXXXXXXXSVEGPGKELYGW 451 + G L+GW Sbjct: 190 -GKEGYGRRDWKEKQNQGSNLFGW 212
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