BP920923
Clone id YMU001_000143_D09
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TCAGGTTCCGCTCTCCGCTTCTTCAGTCTCAATCTTTTTTCTAGATTTCCGACTCTTTCT
TGGAGGGTAGAGTTTTTGTGAGTTGCGGCTTTACCCTCAATTTTGATGCTATCTCTTGGA
GCTGTCAGCAATAATACTTCCTGTCAGCTGCCAGGTGCTTCTAGATGCCTTCTACGTTTC
TTACTTTTTCTCCTATTTTTTAGGTTATAGGGGCTGATGTGTGGGTCGGCAGCCAGCCTA
TGGCACTATATAGGGAGGAAGGGGTACCTCTCAGGTGCACTACACAACTCAGTAGGGTGC
CCCCTTGTGGGCGGCCCTAGGCCACAATACTAGCCATATGGGGTATATCTGCGTTTTTGC
AGGCCCCGCTTTGGCATTTTTGTAGGCTTTATCTACAGTTTTTCGTGGAGTTCTAGACAG
CCCAGAGGCTTTTCCCCTTGGCGTTTTTCCTCTCAAGGCAATAGTATCATAGCGATCTCA
TATGGTGGGCACTCACCCAATGGTGGTGCTGTCCATGGAGAGCACTTCATGACACATTGC
TGGCAGCATCACGAG
■■Homology search results ■■ -
sp_hit_id Q4R5M2
Definition sp|Q4R5M2|CATB_MACFA Cathepsin B OS=Macaca fascicularis
Align length 37
Score (bit) 30.8
E-value 4.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920923|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_D09.
(555 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4R5M2|CATB_MACFA Cathepsin B OS=Macaca fascicularis GN=CTSB ... 31 4.7
sp|Q94KT8|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=C... 30 7.9

>sp|Q4R5M2|CATB_MACFA Cathepsin B OS=Macaca fascicularis GN=CTSB
PE=2 SV=1
Length = 339

Score = 30.8 bits (68), Expect = 4.7
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Frame = +1

Query: 211 GLMCGSA------ASLWHYIGRKGYLSGALHNS-VGC 300
G+MCG A W++ RKG +SG L++S VGC
Sbjct: 143 GIMCGDGCNGGYPAGAWNFWTRKGLVSGGLYDSHVGC 179


>sp|Q94KT8|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=COB
PE=2 SV=1
Length = 456

Score = 30.0 bits (66), Expect = 7.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3

Query: 379 KCQSGACKNADIPHMASIVA*GRPQGGT---LLSCVVHL 272
+ +SGAC + D PH+AS+V+ +G L+ C H+
Sbjct: 259 RTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQCTRHM 297


tr_hit_id B5EAU4
Definition tr|B5EAU4|B5EAU4_GEOBB NAD-dependent epimerase/dehydratase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
Align length 49
Score (bit) 33.5
E-value 7.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920923|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_D09.
(555 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B5EAU4|B5EAU4_GEOBB NAD-dependent epimerase/dehydratase OS=Ge... 33 7.8

>tr|B5EAU4|B5EAU4_GEOBB NAD-dependent epimerase/dehydratase
OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 /
DSM 16622) GN=Gbem_0374 PE=3 SV=1
Length = 310

Score = 33.5 bits (75), Expect = 7.8
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3

Query: 171 STFLTFSPIF*VIGADVWVGSQPMALYREEGVPLRCTTQ--LSRVPPCG 311
ST + P+ V GA ++G + +A EEG+P+RC + S VP CG
Sbjct: 2 STSNSKKPMVLVTGATGFIGRRLVAALAEEGIPVRCLVRNVESPVPACG 50