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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920926
Clone id YMU001_000143_E01
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAATAGCAGGTTAATGCTTGTACTACGCAAATGCTCCAATGTTCGGAGGATCCCCAATA
TATAAAATTTTTGACTAAACATCCGATTGATGAAGTGCATAACCGGTGGCGTACAGCCAA
GGACTCACCTCTAAAATTAGCATTGAAGATAACACCTGTCCCACGGATGTACACTGAAGA
TGAATTTGATGATGTGATTGAACGACGAGTCCACCAAATATTAAAGACCATGAAGCATTC
AAAGAGGCGTTGCAAGGGAACAAGGACATATATCTGCGCGGGGCCCCAAAAAGGCACAAG
AATGAAAACGACTGACATACTAAAATAGAGCTGGGCGAGGAGATACTCGCTCCAGAACAA
ATACTCAAAAGGAAACTGAATGGGATACTCATGTGCTGATAGTATTCTGCTATATGACTT
TATGAATAGAACTTTGAACATCGACATTCCCGAAGATGACTCTGATTTATGTATGAGATT
AATGTGTTTGAACGATCT
■■Homology search results ■■ -
sp_hit_id P14544
Definition sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 OS=Leishmania tarentolae
Align length 86
Score (bit) 34.7
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920926|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_E01.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 OS=Leishmani...    35   0.23 
sp|Q5FW85|ECM2_MOUSE Extracellular matrix protein 2 OS=Mus muscu...    31   2.6  
sp|O13904|MUG84_SCHPO Meiotically up-regulated gene 84 protein O...    31   3.4  
sp|Q9ZDE9|Y382_RICPR Uncharacterized protein RP382 OS=Rickettsia...    30   4.4  
sp|P14243|MTC9_CITFR Modification methylase Cfr9I OS=Citrobacter...    30   4.4  
sp|Q7VHF4|KHSE_HELHP Homoserine kinase OS=Helicobacter hepaticus...    30   4.4  
sp|Q9USK5|TIP41_SCHPO Type 2A phosphatase activator tip41 OS=Sch...    30   5.7  
sp|Q9KE51|HTPG_BACHD Chaperone protein htpG OS=Bacillus halodura...    30   5.7  
sp|P30774|MTX1_XANCC Modification methylase XcyI OS=Xanthomonas ...    30   7.5  
sp|P59583|WRK32_ARATH Probable WRKY transcription factor 32 OS=A...    29   9.8  
sp|Q6PAE6|CE022_XENLA UPF0489 protein C5orf22 homolog OS=Xenopus...    29   9.8  

>sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 OS=Leishmania
           tarentolae GN=COI PE=3 SV=1
          Length = 549

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
 Frame = -2

Query: 453 SGMSMFKVLFIKSYSRILSAHEYPIQFPFEYLFWSEY------LLAQLYFSMSVVFILVP 292
           S M  F +  +  Y+      +YP+ F    LFWS +      LLA L   +  +F +  
Sbjct: 423 SNMLFFPMHSLGMYAFPRRISDYPVSF----LFWSSFMLYGMLLLASLILFLCALFCVFL 478

Query: 291 FWGPAQIYVLVPLQRLFECFMVFNIW 214
           FW     +V + +  L+ CF  F+ W
Sbjct: 479 FWDYCLFFVSLFVFSLY-CFFYFSTW 503


>sp|Q5FW85|ECM2_MOUSE Extracellular matrix protein 2 OS=Mus musculus
           GN=Ecm2 PE=1 SV=1
          Length = 670

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 211 PPNIK-DHEAFKEALQGNKDIYLRGAPKRHKNEND*HTKI----ELGEEILAPEQ 360
           PP ++ D  A KEALQ  +D  +    K HK E    TKI    E  E  L PE+
Sbjct: 169 PPQMEMDQVAIKEALQSEEDEEIAEGHKEHKKETSVPTKIHGDGERTERKLRPEK 223


>sp|O13904|MUG84_SCHPO Meiotically up-regulated gene 84 protein
           OS=Schizosaccharomyces pombe GN=mug84 PE=1 SV=2
          Length = 120

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 26/109 (23%), Positives = 43/109 (39%)
 Frame = -2

Query: 369 FEYLFWSEYLLAQLYFSMSVVFILVPFWGPAQIYVLVPLQRLFECFMVFNIWWXXXXXXX 190
           +EY  +  YL++ L F + +V+ L P           P+ + FE     + WW       
Sbjct: 7   YEYYGFVMYLVSMLGFGVYIVWALTP----------APVLKFFEIHYYLSRWWALAIPTW 56

Query: 189 XXXXSVYIRGTGVIFNANFRGESLAVRHRLCTSSIGCLVKNFIYWGSSE 43
                +YI    V+ NA +  E L        SS+ C+V  +   G  +
Sbjct: 57  LFVLVIYIH---VVLNA-YNTEVLTKPF----SSLECIVDQYALVGEED 97


>sp|Q9ZDE9|Y382_RICPR Uncharacterized protein RP382 OS=Rickettsia
           prowazekii GN=RP382 PE=4 SV=1
          Length = 510

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 420 KSYSRILSAHEYPIQFPFEYLFWSEYLLAQLYFSMSVVFILV 295
           KS  +I+      I+F +E LFWS   L Q  ++  ++FI V
Sbjct: 204 KSLQKIIQIIPIEIEFYYELLFWSGGHLLQFIYTQILIFIWV 245


>sp|P14243|MTC9_CITFR Modification methylase Cfr9I OS=Citrobacter
           freundii GN=cfr9IM PE=3 SV=2
          Length = 300

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 135 FRGESLAVRHRLCTSSIGCLVKNFIYWGSSEH 40
           F G++L+V  RL + S+ C+V +  YWG  ++
Sbjct: 29  FEGDALSVLRRLPSGSVRCIVTSPPYWGLRDY 60


>sp|Q7VHF4|KHSE_HELHP Homoserine kinase OS=Helicobacter hepaticus
           GN=thrB PE=3 SV=1
          Length = 299

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -2

Query: 429 LFIKSYSRILSAHEYPIQFPFEYLFWSEYLLAQLYFSMSVVFI 301
           +FIK ++ IL+ H YP+Q PF++ F +   +++   S S V +
Sbjct: 56  VFIKIFNEILALHNYPMQ-PFKFSFHNAIPISRGLGSSSAVIV 97


>sp|Q9USK5|TIP41_SCHPO Type 2A phosphatase activator tip41
           OS=Schizosaccharomyces pombe GN=tip41 PE=2 SV=1
          Length = 252

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -2

Query: 441 MFKVLFIKSY--SRILSAHEYPIQFPFEYLFWSEY 343
           + +V F K +  SRI    EYP+ +PF++ ++++Y
Sbjct: 76  VMQVSFAKDWAKSRIKPGEEYPVIYPFDWTYYTDY 110


>sp|Q9KE51|HTPG_BACHD Chaperone protein htpG OS=Bacillus halodurans
           GN=htpG PE=3 SV=1
          Length = 625

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 44  SEDPQYIKFLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRMYTEDEFDDVIERR-VHQI 220
           SED  Y +FL ++ +  +  ++      P+K+ +    + +  TEDE++DVIE + ++ +
Sbjct: 177 SEDESYDEFLEEYRLTSIIKKYSDFIRYPIKMDVTKREL-KEGTEDEYEDVIEEQTINSM 235

Query: 221 LKTMKHSKRRCK 256
           +   + +K   K
Sbjct: 236 VPIWRKNKNELK 247


>sp|P30774|MTX1_XANCC Modification methylase XcyI OS=Xanthomonas
           campestris pv. cyanopsidis GN=xcyIM PE=3 SV=1
          Length = 300

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 135 FRGESLAVRHRLCTSSIGCLVKNFIYWGSSEH 40
           F G++L V  RL + S+ C+V +  YWG  ++
Sbjct: 29  FEGDALTVLRRLPSGSVRCVVTSPPYWGLRDY 60


>sp|P59583|WRK32_ARATH Probable WRKY transcription factor 32
           OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1
          Length = 466

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +2

Query: 44  SEDPQYIKFLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRMYTEDEFDDVIERRVHQIL 223
           S DP         P+  V  +     DSP+   L +TPVPR    D ++    +   + +
Sbjct: 124 SLDPATASTAQDLPLVSVPTKQEQRSDSPVVNRLSVTPVPRTPARDGYN--WRKYGQKQV 181

Query: 224 KTMKHSKRRCKGTRTYICA 280
           K+ K S+   + T T  CA
Sbjct: 182 KSPKGSRSYYRCTYTECCA 200
tr_hit_id O63543
Definition tr|O63543|O63543_9EUGL Cytochrome c oxidase subunit 1 OS=Bodo saltans
Align length 80
Score (bit) 36.6
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920926|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_E01.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O63543|O63543_9EUGL Cytochrome c oxidase subunit 1 OS=Bodo sa...    37   0.63 
tr|A1YDT9|A1YDT9_9TELE Recombination activating protein 1 (Fragm...    36   0.82 
tr|Q9XLW7|Q9XLW7_LEIPE Cytochrome c oxidase subunit 1 (Fragment)...    35   1.4  
tr|Q0ZE54|Q0ZE54_9TELE Recombination activating protein 1 (Fragm...    35   1.8  
tr|Q0ZE24|Q0ZE24_9TELE Recombination activating protein 1 (Fragm...    35   1.8  
tr|A4TTY1|A4TTY1_9PROT Putative uncharacterized protein OS=Magne...    35   1.8  
tr|Q0ZE76|Q0ZE76_9TELE Recombination activating protein 1 (Fragm...    35   2.4  
tr|Q0ZE38|Q0ZE38_9TELE Recombination activating protein 1 (Fragm...    35   2.4  
tr|Q0ZE25|Q0ZE25_9TELE Recombination activating protein 1 (Fragm...    35   2.4  
tr|B6CQ82|B6CQ82_9TELE Recombination activating protein 1 (Fragm...    35   2.4  
tr|B6CQ79|B6CQ79_9TELE Recombination activating protein 1 (Fragm...    35   2.4  
tr|A8R6K8|A8R6K8_9TELE Recombination activating protein 1 (Fragm...    35   2.4  
tr|B7TYN7|B7TYN7_LEIDO Cytochrome c oxidase subunit I OS=Leishma...    35   2.4  
tr|B6IH68|B6IH68_CAEBR Putative uncharacterized protein OS=Caeno...    35   2.4  
tr|Q0ZDZ9|Q0ZDZ9_9TELE Recombination activating protein 1 (Fragm...    33   5.3  
tr|Q5ANG6|Q5ANG6_CANAL Potential nuclear RNA processing factor O...    33   7.0  
tr|Q0ZE27|Q0ZE27_9TELE Recombination activating protein 1 (Fragm...    33   9.1  
tr|Q9YVM0|Q9YVM0_MSEPV Putative uncharacterized protein MSV222 O...    33   9.1  
tr|A2QCI5|A2QCI5_ASPNC Similarity OS=Aspergillus niger (strain C...    33   9.1  

>tr|O63543|O63543_9EUGL Cytochrome c oxidase subunit 1 OS=Bodo
           saltans GN=COX1 PE=3 SV=1
          Length = 548

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = -2

Query: 432 VLFIKSYSRILSAHEYPIQ-FPFEYLFWSEYLLAQLYFSMSVV------FILVPFWGPAQ 274
           +LF+  +S  L A    I  +P  +LFWS  LL  + F + +V      F ++ FW    
Sbjct: 425 LLFLPIHSLGLYAFPRRISDYPISFLFWSYVLLCGMLFLVCLVLFAACLFSVLMFWDYCI 484

Query: 273 IYVLVPLQRLFECFMVFNIW 214
            +V + +  LF CF  FN W
Sbjct: 485 FFVSIFIYCLF-CFYSFNSW 503


>tr|A1YDT9|A1YDT9_9TELE Recombination activating protein 1
           (Fragment) OS=Hepsetus odoe GN=RAG1 PE=4 SV=1
          Length = 487

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 26  TQMLQCSEDPQYIKFLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRM 169
           T+  +  +D     +L K+P  E   RWR A D  L++ +K+ PV RM
Sbjct: 309 TEFYKIFQDEIGEMYLKKNPTREERRRWRAALDKQLRMKMKLKPVMRM 356


>tr|Q9XLW7|Q9XLW7_LEIPE Cytochrome c oxidase subunit 1 (Fragment)
           OS=Leishmania peruviana PE=2 SV=1
          Length = 172

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = -2

Query: 375 FPFEYLFWSEY------LLAQLYFSMSVVFILVPFWGPAQIYVLVPLQRLFECFMVFNIW 214
           +P  +LFWS +      LLA L   +  +F ++ FW     +V +    L  CF  F++W
Sbjct: 68  YPVSFLFWSAFMLYGILLLATLILFLCALFCIILFWDYCLFFVSIFTFNL-HCFFYFSLW 126


>tr|Q0ZE54|Q0ZE54_9TELE Recombination activating protein 1
           (Fragment) OS=Leptodoras linnelli GN=rag1 PE=4 SV=1
          Length = 498

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 26  TQMLQCSEDPQYIKFLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRM 169
           T+  +  +D     +L K+P  E   RWR+A D  L+  +K+ PV RM
Sbjct: 311 TEFYKIFQDELAEVYLKKNPTREERQRWRSALDKQLREKMKLKPVMRM 358


>tr|Q0ZE24|Q0ZE24_9TELE Recombination activating protein 1
           (Fragment) OS=Malapterurus tanganyikaensis GN=rag1 PE=4
           SV=1
          Length = 367

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 26  TQMLQCSEDPQYIKFLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRM 169
           T+  +  +D     +L K+P  E   RWR+A D  L+  +K+ PV RM
Sbjct: 182 TEFYKIFQDEIAEVYLKKNPTREERRRWRSALDKQLRKKMKLKPVMRM 229


>tr|A4TTY1|A4TTY1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=MGR_1114 PE=4
           SV=1
          Length = 168

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 363 YLFWSEYLLAQLYFSMSVVFILVPFWGPAQIYVLVPL 253
           +LFWS +LLA LY  ++VV I   F    ++  LVPL
Sbjct: 9   FLFWSRWLLAPLYMGLTVVLIFFAFKFFQELIHLVPL 45


>tr|Q0ZE76|Q0ZE76_9TELE Recombination activating protein 1
           (Fragment) OS=Bagarius yarrelli GN=rag1 PE=4 SV=1
          Length = 495

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  FLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRM 169
           +L K+P  E   RWR+A D  L+  +K+ PV RM
Sbjct: 325 YLKKNPTREERRRWRSALDKQLRKKMKLKPVMRM 358


>tr|Q0ZE38|Q0ZE38_9TELE Recombination activating protein 1
           (Fragment) OS=Hemisilurus moolenburghi GN=rag1 PE=4 SV=1
          Length = 489

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 26  TQMLQCSEDPQYIKFLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRM 169
           T+  +  +D     +L  +P  E   RWRTA D  L+  +K+ PV RM
Sbjct: 311 TEFYKIFQDEIAEVYLKNNPTREERRRWRTALDKQLRKEMKLKPVMRM 358


>tr|Q0ZE25|Q0ZE25_9TELE Recombination activating protein 1
           (Fragment) OS=Malapterurus beninensis GN=rag1 PE=4 SV=1
          Length = 498

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 26  TQMLQCSEDPQYIKFLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRM 169
           T+  +  +D     +L K+P  E   RWR+A D  L+  +K+ PV RM
Sbjct: 311 TEFYKIFQDEIAEVYLKKNPTREERRRWRSALDKQLRNKMKLKPVMRM 358


>tr|B6CQ82|B6CQ82_9TELE Recombination activating protein 1
           (Fragment) OS=Micronemacheilus pulcher GN=RAG1 PE=4 SV=1
          Length = 499

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 68  FLTKHPIDEVHNRWRTAKDSPLKLALKITPVPRM 169
           FL  +P  E   RWR+A D  L+  LK+ PV RM
Sbjct: 325 FLKSNPSREERRRWRSALDKQLRKKLKVKPVMRM 358