NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920939
Clone id YMU001_000143_F03
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTTTTTTTTGATCAAACACCTCAACAAAGGCTACAGGTCGAATA
CAGCAAAGGCCGTACCAAACAAGGAAAACTCCTGCAACACAAACCTCTGTGCTGTTGAGA
ATAAGCTCCAAAGCCTTCCCTTCTCTATTTTTCAATTGTGCTTGCTTGCTAAAAGAGCCA
AGTTGCTTCTGGAGTATCAATTTACACACTCAACAAAATTGTCATTCTGTTGACTACATT
GCAACTCTGAGCCTTGCAAGATTATGGACAGATCTTATGAAGGTTGATGCGAATTCACCA
ACCACAAGCTAGGTAAACAATACACCAGAAGCTCTTCACTTGTGAGTAATCTATAAATTC
CTTCTGCCCAAAACCAGTTCATTTGTGACCATCTCATCACCATTCATAATATCCAATATC
ACGCGTC
■■Homology search results ■■ -
sp_hit_id P18751
Definition sp|P18751|ZO71_XENLA Oocyte zinc finger protein XlCOF7.1 (Fragment) OS=Xenopus laevis
Align length 88
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920939|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_F03.
         (389 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18751|ZO71_XENLA Oocyte zinc finger protein XlCOF7.1 (Fragme...    31   2.2  
sp|P0C6E8|VMGRA_TRIGA Zinc metalloproteinase/disintegrin (Fragme...    31   2.2  
sp|P15503|DISA_TRIGA Zinc metalloproteinase/disintegrin OS=Trime...    30   4.9  
sp|Q62396|ZFP92_MOUSE Zinc finger protein 92 OS=Mus musculus GN=...    29   6.4  
sp|Q6Y5M5|PMIP_PLEDJ Mitochondrial intermediate peptidase OS=Ple...    29   6.4  
sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo s...    29   6.4  
sp|B0CDA0|SYH_ACAM1 Histidyl-tRNA synthetase OS=Acaryochloris ma...    29   8.4  

>sp|P18751|ZO71_XENLA Oocyte zinc finger protein XlCOF7.1 (Fragment)
           OS=Xenopus laevis PE=2 SV=1
          Length = 898

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = +1

Query: 100 PFSIFQXXXXXXXXXXXXEYQFTHSTKLSFC*LHC-----NSEPCKIMDRSYEG*CEFTN 264
           PFS F+             +Q TH+ +  F    C     +S       R++ G   F+ 
Sbjct: 594 PFSCFECRKCFSNPSNLARHQMTHTGEKPFSCSECGKCFASSSDLTFHHRTHTGEKPFSC 653

Query: 265 HKLGKQYTRSSSLVSNL*IPSAQNQFIC 348
            + GK Y++ SSLV +    + +  F C
Sbjct: 654 SECGKCYSKKSSLVHHQRTHTGEKPFSC 681


>sp|P0C6E8|VMGRA_TRIGA Zinc metalloproteinase/disintegrin (Fragment)
           OS=Trimeresurus gramineus PE=1 SV=1
          Length = 435

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query: 182 CHSVDYIATLSLARLWT--DLMKVDANSPTT 268
           C +++ + TLSL  +W+  DL+ V A++PTT
Sbjct: 71  CRALNIVTTLSLLEIWSEKDLITVQASAPTT 101


>sp|P15503|DISA_TRIGA Zinc metalloproteinase/disintegrin
           OS=Trimeresurus gramineus PE=1 SV=3
          Length = 480

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query: 182 CHSVDYIATLSLARLWT--DLMKVDANSPTT 268
           C +++ + TLS+  +W+  DL+ V A++PTT
Sbjct: 235 CRALNIVTTLSVLEIWSEKDLITVQASAPTT 265


>sp|Q62396|ZFP92_MOUSE Zinc finger protein 92 OS=Mus musculus
           GN=Zfp92 PE=2 SV=1
          Length = 488

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
 Frame = +1

Query: 154 EYQFTHSTKLSFC*LHCNSEPCKIMDRSY---------EG*CEFTNHKLGKQYTRSSSLV 306
           ++Q  HS+++ F    C     K+  RS+          G   F   + GK ++RSS+L+
Sbjct: 214 KHQVIHSSEMPFVCRMCG----KVFRRSFALLEHTRIHSGERPFECTECGKAFSRSSNLI 269

Query: 307 SNL*IPSAQNQFIC 348
            +  I S Q  +IC
Sbjct: 270 EHQRIHSGQKPYIC 283


>sp|Q6Y5M5|PMIP_PLEDJ Mitochondrial intermediate peptidase
           OS=Pleurotus djamor GN=OCT1 PE=3 SV=1
          Length = 785

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 140 PSCFWSINLHTQQNCHSVDYIATLSLA---RLWTDLMKVDANSPTTS*VNNTPEALH 301
           PS  W +  H Q  CHS+D  + + LA   +++     VD +  +TS      EALH
Sbjct: 622 PSSAWQVGNHHQDPCHSIDTHSQILLAAMDQIYHSPSVVDPSFSSTS----ALEALH 674


>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo
           sapiens GN=NSUN5 PE=1 SV=2
          Length = 429

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 76  QHRGLC-CRSFPCLVRPLLYSTCSLC 2
           Q R LC   +FP L R L+YSTCSLC
Sbjct: 338 QQRALCHALTFPSLQR-LVYSTCSLC 362


>sp|B0CDA0|SYH_ACAM1 Histidyl-tRNA synthetase OS=Acaryochloris
           marina (strain MBIC 11017) GN=hisS PE=3 SV=1
          Length = 430

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -3

Query: 138 SFSKQAQLKNREGKALELILNSTEVCVAGVFLVW 37
           +F KQ +  NR G    LIL  TE C   V L W
Sbjct: 363 AFGKQLKRANRSGALACLILGDTEACDRTVQLKW 396
tr_hit_id A8KC49
Definition tr|A8KC49|A8KC49_DANRE LOC100149217 protein (Fragment) OS=Danio rerio
Align length 70
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920939|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_F03.
         (389 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8KC49|A8KC49_DANRE LOC100149217 protein (Fragment) OS=Danio ...    37   0.64 
tr|Q1LW39|Q1LW39_DANRE Novel protein (Fragment) OS=Danio rerio G...    33   5.5  

>tr|A8KC49|A8KC49_DANRE LOC100149217 protein (Fragment) OS=Danio
           rerio GN=LOC100149217 PE=2 SV=1
          Length = 418

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = +1

Query: 154 EYQFTHSTKLSFC*LHCNSE-----PCKIMDRSYEG*CEFTNHKLGKQYTRSSSLVSNL* 318
           ++Q  H+ +      HCN         K+ +RS+ G   +T  + GK +T+SSSLV+++ 
Sbjct: 280 KHQKIHTGEKPHVCSHCNKRFTTLGQLKVHERSHTGEKPYTCTQCGKSFTQSSSLVNHMR 339

Query: 319 IPSAQNQFIC 348
           I + +  F C
Sbjct: 340 IHTGEKPFTC 349


>tr|Q1LW39|Q1LW39_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=si:dkey-15h8.3 PE=4 SV=1
          Length = 415

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +1

Query: 157 YQFTHSTKLSFC*LHCN-----SEPCKIMDRSYEG*CEFTNHKLGKQYTRSSSLVSNL*I 321
           +Q  H+ +  +   HCN     S   K  +R + G   FT  + G+ +TRSS+L  ++  
Sbjct: 320 HQLIHTGEKPYVCSHCNKAFRDSGYLKAHERIHTGEKPFTCTQCGRSFTRSSTLSEHILT 379

Query: 322 PSAQNQFICDH 354
            + + +  CDH
Sbjct: 380 HTGERKHKCDH 390