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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920951
Clone id YMU001_000143_G04
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCAGGTACTCCCCAAGGGGGAGCGTGAGGGAAGGTCCCCTTTGCAAGCAAAAATAAGCC
AGATCTTCGTCCCCAAGCACTATCAAAGAAGAAAGAGATAGTTGGTTGCCCCCTCCACGA
CAAAACCTATCTCCATAGCCTTTTGCAACCCCTCAACAAGGGATGCAACGCCTATAAAAC
CCAATGCACCACCCGCCGCAAGGTCGATATGGTTCTCTAGAAAACCCTCCAATAGGGGCC
CCCACCCAACAATAAGTTGTTGCAACTAGCTAGAGATGCGCCTATGGTAGGCTTTGTGAG
ATCCCCACACAGGTGACACATAGATAAATGTTATAAACTTTATGGCTCTTCCTTGACATG
TTAAAGTGCATTTTATGGTCACACTTTCTAAGCTTGCTCACTATATATATTAGTATGTGA
TTTGCGCATTGCTGCAGCCAAAGAAAATCCCCTCTCTCTCTCGCAGGTACTC
■■Homology search results ■■ -
sp_hit_id Q5KJI2
Definition sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans
Align length 61
Score (bit) 34.3
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920951|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_G04.
         (472 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1 OS=Cryptoco...    34   0.29 
sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61 O...    27   0.35 
sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2        33   0.84 
sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1 OS=Cryptoco...    32   1.1  
sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2 OS...    32   1.4  
sp|A2QBZ0|SEC31_ASPNC Protein transport protein sec31 OS=Aspergi...    32   1.9  
sp|Q54HX8|LITAH_DICDI Protein LITAF homolog OS=Dictyostelium dis...    30   4.2  
sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidi...    30   5.4  
sp|O95171|SCEL_HUMAN Sciellin OS=Homo sapiens GN=SCEL PE=1 SV=2        30   5.4  
sp|P16733|GM_HCMVA Glycoprotein M OS=Human cytomegalovirus (stra...    30   7.1  
sp|Q61313|AP2B_MOUSE Transcription factor AP-2 beta OS=Mus muscu...    30   7.1  
sp|Q92481|AP2B_HUMAN Transcription factor AP-2 beta OS=Homo sapi...    30   7.1  
sp|Q76HI7|AP2B_CANFA Transcription factor AP-2 beta OS=Canis fam...    30   7.1  
sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-depen...    29   9.1  
sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthetase OS...    29   9.1  
sp|Q99014|KPC1_TRIRE Protein kinase C-like OS=Trichoderma reesei...    29   9.3  
sp|Q0V8S0|HGS_BOVIN Hepatocyte growth factor-regulated tyrosine ...    29   9.3  
sp|Q64317|DLX1_MOUSE Homeobox protein DLX-1 OS=Mus musculus GN=D...    29   9.3  
sp|P56177|DLX1_HUMAN Homeobox protein DLX-1 OS=Homo sapiens GN=D...    29   9.3  

>sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1
           OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1
          Length = 625

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 70  SPSTIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENPPIGAPTQ 249
           +P+ ++EER+S  PPP+    P   A P    Q       HPP   + + +  P  AP Q
Sbjct: 411 APAMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQAAQQSPAAAPVQ 464

Query: 250 Q 252
           Q
Sbjct: 465 Q 465


>sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61
           OS=Gallus gallus GN=CCDC61 PE=2 SV=1
          Length = 403

 Score = 27.3 bits (59), Expect(2) = 0.35
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 13  PRGSVREGPLCKQK*ARSSSPSTIKEERDS 102
           PRG+V  G  C+++  RSSS  +++  R +
Sbjct: 293 PRGTVSSGDNCRRRGRRSSSAESLQSRRSA 322



 Score = 25.0 bits (53), Expect(2) = 0.35
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  RRKR*LVAPSTTKPISIAFCNPSTRDATP 173
           +R+R L  PST  P+S + CN ++  + P
Sbjct: 334 QRRRGLGGPSTRSPLSASSCNSTSVASHP 362


>sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2
          Length = 652

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 58  ARSSSPST--IKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHP-PQGRYGSLENP 228
           A +S+P+T  +K++R SW PPP     P   A+P     R    +H P P      + +P
Sbjct: 121 ATASTPATTPVKKKRQSWFPPP----PPGHNASPSTAASRRDPALHPPLPPKPCSPIASP 176

Query: 229 -PIGAPTQQ*VVATS*RC 279
            P+G   +Q   AT+  C
Sbjct: 177 KPLGRTNRQIHAATAGAC 194


>sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1
           OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1
          Length = 616

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 70  SPSTIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENPPIGAPTQ 249
           +P+ ++EER+S  PPP+    P   A P    Q       HPP   +    + P  AP Q
Sbjct: 411 APAMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQVAHHSPAAAPIQ 464

Query: 250 Q 252
           Q
Sbjct: 465 Q 465


>sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2
           OS=Saccharomyces cerevisiae GN=DSK2 PE=1 SV=1
          Length = 373

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = +2

Query: 2   AGTPQGGA*GKVPFASKNKPDLRPQALSKKKEIVGCPLHDKTYLHSLLQPLNKGCNAYKT 181
           AGT  G      PFAS   P L P A +  +   G P  D   L S+ QP  +   A  T
Sbjct: 266 AGTNAGANTAANPFASLLNPALNPFANAGNRASTGMPAFDPALLASMFQPPVQASQAEDT 325

Query: 182 Q 184
           +
Sbjct: 326 R 326


>sp|A2QBZ0|SEC31_ASPNC Protein transport protein sec31 OS=Aspergillus
            niger (strain CBS 513.88 / FGSC A1513) GN=sec31 PE=3 SV=1
          Length = 1259

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +1

Query: 4    RYSPRGSVREGPLCKQK*ARSSSPSTIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NP 183
            R +P  +    P   Q    +  P     +R   +PPP +  +P P  T     Q     
Sbjct: 955  RSTPAAATVASPFPNQSPTLTQGPPPPAGQRAPSVPPPPKGTAPPPRMTSPPAAQPASTT 1014

Query: 184  MHHPPQGRYGSL-ENPPIGA 240
            M  PP   Y SL ++PP+ +
Sbjct: 1015 MPPPPANPYASLPQSPPMAS 1034


>sp|Q54HX8|LITAH_DICDI Protein LITAF homolog OS=Dictyostelium
           discoideum GN=litaf PE=3 SV=1
          Length = 181

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
 Frame = +1

Query: 67  SSPSTIKEERDSWLP---------PPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSL 219
           SSP   ++++  + P         PP+Q   P  +  PQQG      P  +PPQ  Y   
Sbjct: 16  SSPPQEQQQQQQYPPQGYPQQQQYPPQQGYPPQQYP-PQQGYP----PQQYPPQQGYPQQ 70

Query: 220 ENP-----PIGAPTQ 249
           + P     P+GAP Q
Sbjct: 71  QPPQQYPAPVGAPQQ 85


>sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidioides
            immitis GN=SEC31 PE=3 SV=1
          Length = 1261

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 64   SSSPSTIKEERDSWLPPPRQNLSP*PFATPQ-QGMQRL*NPMHHPPQGRYGSLENPPIGA 240
            S  PST+   RDS  PPP +  +P   A+P   G+     P   PP   +  + +PP+  
Sbjct: 975  SPPPSTMPAPRDSVPPPPPKGPAPPRMASPSTAGIPHGLQPAERPPSRTH--VYSPPLAQ 1032

Query: 241  PT 246
             T
Sbjct: 1033 QT 1034


>sp|O95171|SCEL_HUMAN Sciellin OS=Homo sapiens GN=SCEL PE=1 SV=2
          Length = 688

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 58  ARSSSPSTIKEERDSWLPPPRQNLSP*PFATPQQGMQRL*NPMHHPPQGRYGSLENPPIG 237
           A +S+ + +K++R SW PPP    +    A+   G +R   P  HPP        + P+ 
Sbjct: 148 ASTSATTPVKKKRQSWFPPPPPGYN----ASSSTGTRRR-EPGVHPP---IPPKPSSPVS 199

Query: 238 APTQ 249
           +P Q
Sbjct: 200 SPNQ 203


>sp|P16733|GM_HCMVA Glycoprotein M OS=Human cytomegalovirus (strain
           AD169) GN=GM PE=1 SV=1
          Length = 372

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 353 LTC*SAFYGHTF*ACSLYILVCDLRIAAAKENPLSLSQ 466
           L C + F    F A ++Y LVC ++I+  K+  +SL+Q
Sbjct: 77  LVCYAVFMQLVFLAVTIYYLVCWIKISMRKDKGMSLNQ 114
tr_hit_id Q9VPX2
Definition tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster
Align length 54
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920951|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_G04.
         (472 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG47...    39   0.17 
tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 P...    39   0.17 
tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM1679...    39   0.17 
tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 P...    39   0.17 
tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK246...    38   0.22 
tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520 ...    38   0.22 
tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI179...    38   0.22 
tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura pseud...    38   0.29 
tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH1117...    38   0.29 
tr|B4GPY3|B4GPY3_DROPE GL15573 OS=Drosophila persimilis GN=GL155...    38   0.29 
tr|B4Q6N2|B4Q6N2_DROSI GD23071 OS=Drosophila simulans GN=GD23071...    37   0.38 
tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae GN=GF1516...    37   0.38 
tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota PE=2 SV=1    36   1.1  
tr|A6RTI0|A6RTI0_BOTFB Predicted protein OS=Botryotinia fuckelia...    36   1.1  
tr|B8CI57|B8CI57_9GAMM Putative uncharacterized protein OS=Shewa...    35   2.5  
tr|Q0D313|Q0D313_9MOLL Rhodopsin (Fragment) OS=Illex coindetii P...    34   4.2  
tr|B6ICZ9|B6ICZ9_XENTR Putative uncharacterized protein OS=Xenop...    33   7.1  
tr|A3SKL3|A3SKL3_9RHOB Probable oxidoreductase OS=Roseovarius nu...    33   7.1  
tr|Q4DKT6|Q4DKT6_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.1  
tr|Q14DU0|Q14DU0_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=1      33   9.3  
tr|Q14DQ7|Q14DQ7_MOUSE Scel protein OS=Mus musculus GN=Scel PE=2...    33   9.3  
tr|B3E6R1|B3E6R1_GEOLS Formate dehydrogenase OS=Geobacter lovley...    33   9.3  
tr|B8M666|B8M666_9EURO CDF zinc transporter (Msc2), putative OS=...    33   9.3  
tr|A1CPM4|A1CPM4_ASPCL G2/M phase checkpoint control protein Sum...    33   9.3  
tr|A6SGR2|A6SGR2_BOTFB Putative uncharacterized protein OS=Botry...    33   9.3  

>tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG4726
           PE=2 SV=1
          Length = 512

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454


>tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 PE=4
           SV=1
          Length = 509

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451


>tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM16795
           PE=4 SV=1
          Length = 512

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454


>tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 PE=4
           SV=1
          Length = 509

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV +G  N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451


>tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK24669
           PE=4 SV=1
          Length = 514

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 401 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 454


>tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520
           PE=4 SV=1
          Length = 512

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452


>tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI17977
           PE=4 SV=1
          Length = 512

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452


>tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA18388 PE=4 SV=1
          Length = 514

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 403 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 456


>tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH11174
           PE=4 SV=1
          Length = 510

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 397 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 450


>tr|B4GPY3|B4GPY3_DROPE GL15573 OS=Drosophila persimilis GN=GL15573
           PE=4 SV=1
          Length = 514

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 253 IVGWGPLLEGFLENHIDLA---AGGALGFIGVASLVEGLQKAMEIGFVVEGATN 101
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GFV  G  N
Sbjct: 403 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 456