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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920955
Clone id YMU001_000143_G09
Library
Length 211
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGGGGTCTTGACGAGGCCAACACGGTGAACATCTTCACCAAGACCCTGGAGCAGCACTTG
CACAGCTTCTACCATGTCAGCACTGTCATCCATGAGCTCATATGAGTCAATGGAGGATGC
ACTTGATATGCCCGAACCTATTGTAGTTTCATCTGCCTCACCCTCCATCTCAGATCCATG
GTGGTGATGGCATCCATTCATTTCTATGCGC
■■Homology search results ■■ -
sp_hit_id Q2JR69
Definition sp|Q2JR69|GCH1_SYNJA GTP cyclohydrolase 1 OS=Synechococcus sp. (strain JA-3-3Ab)
Align length 25
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920955|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_G09.
         (193 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2JR69|GCH1_SYNJA GTP cyclohydrolase 1 OS=Synechococcus sp. (...    35   0.15 
sp|Q2JPT8|GCH1_SYNJB GTP cyclohydrolase 1 OS=Synechococcus sp. G...    34   0.20 
sp|Q55759|GCH1_SYNY3 GTP cyclohydrolase 1 OS=Synechocystis sp. (...    34   0.26 
sp|Q5N623|GCH1_SYNP6 GTP cyclohydrolase 1 OS=Synechococcus sp. (...    34   0.26 
sp|Q54769|GCH1_SYNE7 GTP cyclohydrolase 1 OS=Synechococcus elong...    34   0.26 
sp|Q8DUG2|GCH1_STRMU GTP cyclohydrolase 1 OS=Streptococcus mutan...    34   0.26 
sp|A4SF37|GCH1_PROVI GTP cyclohydrolase 1 OS=Prosthecochloris vi...    33   0.34 
sp|Q8XLM2|GCH1_CLOPE GTP cyclohydrolase 1 OS=Clostridium perfrin...    33   0.45 
sp|Q8YLL1|GCH11_ANASP GTP cyclohydrolase 1 1 OS=Anabaena sp. (st...    33   0.45 
sp|Q19980|GCH1_CAEEL GTP cyclohydrolase 1 OS=Caenorhabditis eleg...    32   0.77 
sp|P48596|GCH1_DROME GTP cyclohydrolase 1 OS=Drosophila melanoga...    32   1.00 
sp|Q0TRM0|GCH1_CLOP1 GTP cyclohydrolase 1 OS=Clostridium perfrin...    32   1.00 
sp|Q9ZDE8|GCH1_RICPR GTP cyclohydrolase 1 OS=Rickettsia prowazek...    31   1.7  
sp|Q7NK98|GCH1_GLOVI GTP cyclohydrolase 1 OS=Gloeobacter violace...    31   1.7  
sp|Q8G3S1|GCH1_BIFLO GTP cyclohydrolase 1 OS=Bifidobacterium lon...    31   1.7  
sp|Q82Z12|GCH1_ENTFA GTP cyclohydrolase 1 OS=Enterococcus faecal...    31   2.2  
sp|Q0STY9|GCH1_CLOPS GTP cyclohydrolase 1 OS=Clostridium perfrin...    31   2.2  
sp|A8GRW0|GCH1_RICRS GTP cyclohydrolase 1 OS=Rickettsia ricketts...    30   2.9  
sp|B0BXB8|GCH1_RICRO GTP cyclohydrolase 1 OS=Rickettsia ricketts...    30   2.9  
sp|A8F1F2|GCH1_RICM5 GTP cyclohydrolase 1 OS=Rickettsia massilia...    30   2.9  
sp|Q1RID0|GCH1_RICBR GTP cyclohydrolase 1 OS=Rickettsia bellii (...    30   2.9  
sp|A8GUB6|GCH1_RICB8 GTP cyclohydrolase 1 OS=Rickettsia bellii (...    30   2.9  
sp|A8GN89|GCH1_RICAH GTP cyclohydrolase 1 OS=Rickettsia akari (s...    30   2.9  
sp|O66603|GCH1_AQUAE GTP cyclohydrolase 1 OS=Aquifex aeolicus GN...    30   2.9  
sp|Q8DJB8|GCH1_THEEB GTP cyclohydrolase 1 OS=Thermosynechococcus...    30   3.8  
sp|Q68WZ4|GCH1_RICTY GTP cyclohydrolase 1 OS=Rickettsia typhi GN...    30   3.8  
sp|Q4ULX3|GCH1_RICFE GTP cyclohydrolase 1 OS=Rickettsia felis GN...    30   3.8  
sp|A0AK45|GCH1_LISW6 GTP cyclohydrolase 1 OS=Listeria welshimeri...    30   3.8  
sp|Q71Y82|GCH1_LISMF GTP cyclohydrolase 1 OS=Listeria monocytoge...    30   3.8  
sp|Q92A75|GCH1_LISIN GTP cyclohydrolase 1 OS=Listeria innocua GN...    30   3.8  

>sp|Q2JR69|GCH1_SYNJA GTP cyclohydrolase 1 OS=Synechococcus sp.
           (strain JA-3-3Ab) GN=folE PE=3 SV=1
          Length = 229

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = -2

Query: 75  MVEAVQVLLQGLGEDVHRVGLVKTP 1
           MV AV+ LL+G+GED  R GL KTP
Sbjct: 46  MVAAVETLLRGIGEDPQREGLKKTP 70


>sp|Q2JPT8|GCH1_SYNJB GTP cyclohydrolase 1 OS=Synechococcus sp.
           GN=folE PE=3 SV=1
          Length = 229

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = -2

Query: 75  MVEAVQVLLQGLGEDVHRVGLVKTP 1
           MV AV+ LL+G+GED  R GL KTP
Sbjct: 46  MVAAVETLLRGIGEDPQREGLRKTP 70


>sp|Q55759|GCH1_SYNY3 GTP cyclohydrolase 1 OS=Synechocystis sp.
           (strain PCC 6803) GN=folE PE=3 SV=1
          Length = 234

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = -2

Query: 75  MVEAVQVLLQGLGEDVHRVGLVKTP 1
           M++AV+V+L+ +GED  R GL+KTP
Sbjct: 50  MMDAVRVMLESVGEDPEREGLLKTP 74


>sp|Q5N623|GCH1_SYNP6 GTP cyclohydrolase 1 OS=Synechococcus sp.
           (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=folE
           PE=3 SV=1
          Length = 213

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -2

Query: 81  ADMVEAVQVLLQGLGEDVHRVGLVKTP 1
           A+M  AV+ LL G+GED  R GL+KTP
Sbjct: 26  AEMEAAVRTLLLGVGEDPEREGLLKTP 52


>sp|Q54769|GCH1_SYNE7 GTP cyclohydrolase 1 OS=Synechococcus
           elongatus (strain PCC 7942) GN=folE PE=3 SV=2
          Length = 213

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -2

Query: 81  ADMVEAVQVLLQGLGEDVHRVGLVKTP 1
           A+M  AV+ LL G+GED  R GL+KTP
Sbjct: 26  AEMEAAVRTLLLGVGEDPEREGLLKTP 52


>sp|Q8DUG2|GCH1_STRMU GTP cyclohydrolase 1 OS=Streptococcus mutans
           GN=folE PE=3 SV=1
          Length = 192

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -2

Query: 99  ELMDDSADMVEAVQVLLQGLGEDVHRVGLVKTP 1
           ++M D   + EAV  LL+ LGED +R GL+ TP
Sbjct: 4   KIMSDQKKIEEAVYQLLEALGEDPNREGLLDTP 36


>sp|A4SF37|GCH1_PROVI GTP cyclohydrolase 1 OS=Prosthecochloris
           vibrioformis (strain DSM 265) (strain DSM 265) GN=folE
           PE=3 SV=1
          Length = 223

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -2

Query: 75  MVEAVQVLLQGLGEDVHRVGLVKTP 1
           M E+V  LL+G+GED  R GL+KTP
Sbjct: 44  MSESVYTLLEGVGEDPEREGLLKTP 68


>sp|Q8XLM2|GCH1_CLOPE GTP cyclohydrolase 1 OS=Clostridium
          perfringens GN=folE PE=3 SV=1
          Length = 185

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = -2

Query: 93 MDDSADMVEAVQVLLQGLGEDVHRVGLVKTP 1
          M D   + E ++++L+ +GEDV+R GL++TP
Sbjct: 1  MIDKEKIKEGMKLILEAIGEDVNREGLIETP 31


>sp|Q8YLL1|GCH11_ANASP GTP cyclohydrolase 1 1 OS=Anabaena sp.
           (strain PCC 7120) GN=folE1 PE=3 SV=1
          Length = 235

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -2

Query: 90  DDSADMVEAVQVLLQGLGEDVHRVGLVKTP 1
           +D   M+ AV+ +L G+GED  R GL+KTP
Sbjct: 46  EDMESMMGAVRSILVGVGEDPEREGLLKTP 75


>sp|Q19980|GCH1_CAEEL GTP cyclohydrolase 1 OS=Caenorhabditis elegans
           GN=cat-4 PE=1 SV=1
          Length = 223

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 90  DDSADMVEAVQVLLQGLGEDVHRVGLVKTP 1
           D    M  A Q ++Q +GED++R GL+KTP
Sbjct: 38  DHLKSMCNAYQSIIQHVGEDINRQGLLKTP 67
tr_hit_id A9S209
Definition tr|A9S209|A9S209_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 26
Score (bit) 40.4
E-value 0.045
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920955|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_G09.
         (193 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S209|A9S209_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.045
tr|A7QEB5|A7QEB5_VITVI Chromosome chr1 scaffold_84, whole genome...    39   0.099
tr|A5BLJ4|A5BLJ4_VITVI Putative uncharacterized protein OS=Vitis...    39   0.099
tr|Q8VYU3|Q8VYU3_SOLLC GTP cyclohydrolase I OS=Solanum lycopersi...    39   0.13 
tr|A9SYS9|A9SYS9_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|A7QSC6|A7QSC6_VITVI Chromosome chr3 scaffold_158, whole genom...    38   0.22 
tr|A5BKQ2|A5BKQ2_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|B5CN05|B5CN05_9FIRM Putative uncharacterized protein OS=Rumin...    37   0.64 
tr|B0G6Q7|B0G6Q7_9FIRM Putative uncharacterized protein OS=Dorea...    37   0.64 
tr|A6BJ36|A6BJ36_9FIRM Putative uncharacterized protein OS=Dorea...    37   0.64 
tr|B4VSW2|B4VSW2_9CYAN GTP cyclohydrolase I OS=Microcoleus chtho...    36   0.84 
tr|A0YRC3|A0YRC3_9CYAN GTP cyclohydrolase I OS=Lyngbya sp. PCC 8...    36   0.84 
tr|A9B5F8|A9B5F8_HERA2 GTP cyclohydrolase I OS=Herpetosiphon aur...    35   1.4  
tr|B7KJE3|B7KJE3_9CHRO GTP cyclohydrolase I OS=Cyanothece sp. PC...    35   1.4  
tr|B7JZP6|B7JZP6_SYNP8 GTP cyclohydrolase I OS=Synechococcus sp....    35   1.9  
tr|B6G3M7|B6G3M7_9ACTN Putative uncharacterized protein OS=Colli...    35   1.9  
tr|B4BUT6|B4BUT6_9CHRO GTP cyclohydrolase I OS=Cyanothece sp. PC...    35   1.9  
tr|B0NCH3|B0NCH3_EUBSP Putative uncharacterized protein OS=Clost...    35   1.9  
tr|A5KJF1|A5KJF1_9FIRM Putative uncharacterized protein OS=Rumin...    35   1.9  
tr|B7Y2F6|B7Y2F6_RUMHA Putative uncharacterized protein OS=Blaut...    35   2.4  
tr|Q9SFV7|Q9SFV7_ARATH GTP cyclohydrolase I (At3g07270) OS=Arabi...    35   2.4  
tr|Q8S3C2|Q8S3C2_ARATH GTP cyclohydrolase I OS=Arabidopsis thali...    35   2.4  
tr|Q3EBB1|Q3EBB1_ARATH Uncharacterized protein At3g07270.2 OS=Ar...    35   2.4  
tr|A8J097|A8J097_CHLRE GTP cyclohydrolase I OS=Chlamydomonas rei...    35   2.4  
tr|B7XAK4|B7XAK4_BOMMO GTP cyclohydrolase I isoform B OS=Bombyx ...    35   2.4  
tr|B7XAK3|B7XAK3_BOMMO GTP cyclohydrolase I isoform A OS=Bombyx ...    35   2.4  
tr|Q4BWY2|Q4BWY2_CROWT GTP cyclohydrolase I OS=Crocosphaera wats...    34   4.2  
tr|B4WJ44|B4WJ44_9SYNE GTP cyclohydrolase I OS=Synechococcus sp....    34   4.2  
tr|Q2V0Q1|Q2V0Q1_9NEOP GTP cyclohydrolase I isoform A OS=Papilio...    34   4.2  
tr|Q2V0Q0|Q2V0Q0_9NEOP GTP cyclohydrolase I isoform B OS=Papilio...    34   4.2  

>tr|A9S209|A9S209_PHYPA Predicted protein (Fragment)
          OS=Physcomitrella patens subsp. patens
          GN=PHYPADRAFT_122994 PE=4 SV=1
          Length = 434

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = -2

Query: 78 DMVEAVQVLLQGLGEDVHRVGLVKTP 1
          DM+ AV+VLL GLGEDV+R GL+KTP
Sbjct: 2  DMMSAVKVLLVGLGEDVNRDGLLKTP 27


>tr|A7QEB5|A7QEB5_VITVI Chromosome chr1 scaffold_84, whole genome
          shotgun sequence OS=Vitis vinifera GN=GSVIVT00036941001
          PE=4 SV=1
          Length = 445

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = -2

Query: 69 EAVQVLLQGLGEDVHRVGLVKTP 1
          EAV+VLLQGLGED++R GL KTP
Sbjct: 22 EAVKVLLQGLGEDINREGLSKTP 44


>tr|A5BLJ4|A5BLJ4_VITVI Putative uncharacterized protein OS=Vitis
          vinifera GN=VITISV_014899 PE=4 SV=1
          Length = 445

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = -2

Query: 69 EAVQVLLQGLGEDVHRVGLVKTP 1
          EAV+VLLQGLGED++R GL KTP
Sbjct: 22 EAVKVLLQGLGEDINREGLSKTP 44


>tr|Q8VYU3|Q8VYU3_SOLLC GTP cyclohydrolase I OS=Solanum lycopersicum
           PE=2 SV=1
          Length = 456

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/34 (50%), Positives = 26/34 (76%)
 Frame = -2

Query: 102 YELMDDSADMVEAVQVLLQGLGEDVHRVGLVKTP 1
           +E   ++  + +AV+VLLQGLGED++R G+ KTP
Sbjct: 23  FETQPETLVIQDAVRVLLQGLGEDINREGIKKTP 56


>tr|A9SYS9|A9SYS9_PHYPA Predicted protein OS=Physcomitrella patens
          subsp. patens GN=PHYPADRAFT_137528 PE=4 SV=1
          Length = 432

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -2

Query: 75 MVEAVQVLLQGLGEDVHRVGLVKTP 1
          M+ AV+VLL GLGEDV R GL+KTP
Sbjct: 1  MMSAVKVLLDGLGEDVSRDGLLKTP 25


>tr|A7QSC6|A7QSC6_VITVI Chromosome chr3 scaffold_158, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00005777001
           PE=4 SV=1
          Length = 214

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = -2

Query: 69  EAVQVLLQGLGEDVHRVGLVKTP 1
           EAV+VLLQGLGED++R G+ KTP
Sbjct: 32  EAVKVLLQGLGEDINREGIRKTP 54


>tr|A5BKQ2|A5BKQ2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035826 PE=4 SV=1
          Length = 435

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = -2

Query: 69  EAVQVLLQGLGEDVHRVGLVKTP 1
           EAV+VLLQGLGED++R G+ KTP
Sbjct: 32  EAVKVLLQGLGEDINREGIRKTP 54


>tr|B5CN05|B5CN05_9FIRM Putative uncharacterized protein
          OS=Ruminococcus lactaris ATCC 29176 GN=RUMLAC_00851
          PE=4 SV=1
          Length = 185

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = -2

Query: 93 MDDSADMVEAVQVLLQGLGEDVHRVGLVKTP 1
          M D   + +AV++LL+G+GEDV+R GL++TP
Sbjct: 1  MIDHEKIEQAVRLLLEGIGEDVNREGLLETP 31


>tr|B0G6Q7|B0G6Q7_9FIRM Putative uncharacterized protein OS=Dorea
          formicigenerans ATCC 27755 GN=DORFOR_02041 PE=4 SV=1
          Length = 185

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = -2

Query: 93 MDDSADMVEAVQVLLQGLGEDVHRVGLVKTP 1
          M D   + +AV++LL+G+GEDV+R GL+ TP
Sbjct: 1  MIDHEKVEQAVRLLLEGIGEDVNREGLIDTP 31


>tr|A6BJ36|A6BJ36_9FIRM Putative uncharacterized protein OS=Dorea
          longicatena DSM 13814 GN=DORLON_02330 PE=4 SV=1
          Length = 185

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = -2

Query: 93 MDDSADMVEAVQVLLQGLGEDVHRVGLVKTP 1
          M D   + +AV++LL+G+GEDV+R GL+ TP
Sbjct: 1  MIDHEKIEQAVRLLLEGMGEDVNREGLIDTP 31