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NBDC - LSDB Archive
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BP920956
Clone id YMU001_000143_G10
Library
Length 363
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGCCAGCATCATGGATGCACGATTGATAAAGATGGAGGTAGCAGTTTGGATAGCACTGC
TGGAACTGGGCCACAGCAATCTAATGGATGTGTGCCTGTGGAAGATGAGGAAGCCAGCAG
TACAGGTGGCGAGGACACTGCTAGCAGCCCTGCATGTGTGCAACCTTTGAGACAGCAACG
AAAGAACATCAATATACACCACCAGTTTGTACGAGAAATTGTAAAAATTCAGCATGATCG
AGAACAATTTGACAGAGAACAAGCAGGGAGACAGATTCACACTCAGAAAGCTGCCACCTT
ACCTCAAGTTGGGCGCAAGAGTTCGGATATCAAGGCAAGCATCTATGTCTCCTGTTTAAG
CTG
■■Homology search results ■■ -
sp_hit_id Q0ZB76
Definition sp|Q0ZB76|EIF3C_BOMMO Eukaryotic translation initiation factor 3 subunit C OS=Bombyx mori
Align length 112
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920956|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_G10.
         (363 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0ZB76|EIF3C_BOMMO Eukaryotic translation initiation factor 3...    33   0.45 
sp|Q9UW24|PIK1A_CANAL Phosphatidylinositol 4-kinase PIK1a OS=Can...    33   0.58 
sp|Q91ZU6|BPA1_MOUSE Bullous pemphigoid antigen 1, isoforms 1/2/...    32   0.76 
sp|Q9PR32|Y112_UREPA Uncharacterized protein UU112 OS=Ureaplasma...    31   1.7  
sp|Q3UA37|QRIC1_MOUSE Glutamine-rich protein 1 OS=Mus musculus G...    31   1.7  
sp|Q9VXG1|HANG_DROME Zinc finger protein hangover OS=Drosophila ...    31   2.2  
sp|P06786|TOP2_YEAST DNA topoisomerase 2 OS=Saccharomyces cerevi...    30   2.9  
sp|Q9V727|ASX_DROME Polycomb protein Asx OS=Drosophila melanogas...    30   2.9  
sp|Q99MD9|NASP_MOUSE Nuclear autoantigenic sperm protein OS=Mus ...    30   4.9  
sp|O95153|RIMB1_HUMAN Peripheral-type benzodiazepine receptor-as...    29   6.4  
sp|Q64ZR4|IF2_BACFR Translation initiation factor IF-2 OS=Bacter...    29   6.4  
sp|Q5LIN1|IF2_BACFN Translation initiation factor IF-2 OS=Bacter...    29   6.4  
sp|Q6C435|FYV10_YARLI Protein FYV10 OS=Yarrowia lipolytica GN=FY...    29   6.4  
sp|Q13474|DRP2_HUMAN Dystrophin-related protein 2 OS=Homo sapien...    29   6.4  
sp|Q6FKM3|ALG8_CANGA Dolichyl pyrophosphate Glc1Man9GlcNAc2 alph...    29   6.4  
sp|P22279|RAS2_RHIRA Ras-like protein 2 OS=Rhizomucor racemosus ...    29   8.4  
sp|Q925N6|IGSF1_RAT Immunoglobulin superfamily member 1 OS=Rattu...    29   8.4  
sp|Q7TQA1|IGSF1_MOUSE Immunoglobulin superfamily member 1 OS=Mus...    29   8.4  
sp|Q68ES4|ER21B_XENLA ER lumen protein retaining receptor 1-B OS...    29   8.4  
sp|Q7Z6B0|CCD91_HUMAN Coiled-coil domain-containing protein 91 O...    29   8.4  

>sp|Q0ZB76|EIF3C_BOMMO Eukaryotic translation initiation factor 3
           subunit C OS=Bombyx mori GN=eIF3-S8 PE=2 SV=1
          Length = 876

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
 Frame = +2

Query: 95  PVEDEEASSTGGEDTASSPACVQPLRQQRKNINIHHQFVREIVKIQHDREQFD------- 253
           P ED+E+S +    ++SS +      ++R   NI  QF++++ K + D E+         
Sbjct: 197 PPEDDESSDSMDWASSSSDSSFSSDDEERGTSNIREQFIKKVTKKEDDEEKIKLKLKKRE 256

Query: 254 --REQAGR-------------QIHTQKAAT--LPQVGRKSSDIKASIYVSCL 358
             RE++G+             +   + AAT   P++  K SDI A++ V  L
Sbjct: 257 ERRERSGKINKRDVADDGGEWETVRKGAATSDKPKMFAKDSDIDAALVVKKL 308


>sp|Q9UW24|PIK1A_CANAL Phosphatidylinositol 4-kinase PIK1a
           OS=Candida albicans GN=PIKA PE=3 SV=1
          Length = 956

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 92  VPVEDEEASSTGGEDTASSPACVQPLRQQRKNINIHHQFVREIVKIQHDREQF 250
           +PV   E   T          C+  L+Q   NI +HHQ V+++    +D  +F
Sbjct: 1   MPVAPHELRDTIKSRDLGLFQCIDLLKQHNDNIGVHHQLVQKLYSYSYDELEF 53


>sp|Q91ZU6|BPA1_MOUSE Bullous pemphigoid antigen 1, isoforms 1/2/3/4
            OS=Mus musculus GN=Dst PE=1 SV=1
          Length = 7389

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 5    QHHGCTIDKDGGSSLDSTAGTGPQQSNGCVPVEDEEASSTGGE--DTAS 145
            + + CT+   GGS  D+T+  GP    G +   D E S   G+  DTA+
Sbjct: 2317 EDNSCTMVPGGGSRNDNTSDCGPLSHKGAIDAGDYETSLLAGQQSDTAT 2365


>sp|Q9PR32|Y112_UREPA Uncharacterized protein UU112 OS=Ureaplasma
           parvum GN=UU112 PE=4 SV=1
          Length = 375

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 259 FSVKLFSIMLNFYNFSYKLVVYIDVLSLLSQRLHT 155
           F +K    +  +YNF ++ +VY DV     ++L T
Sbjct: 106 FDIKKMHELFTYYNFDFEKIVYFDVYKFFEKKLQT 140


>sp|Q3UA37|QRIC1_MOUSE Glutamine-rich protein 1 OS=Mus musculus
           GN=Qrich1 PE=2 SV=1
          Length = 777

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
 Frame = +2

Query: 47  LDSTAGTGP----------------QQSNGCVPVEDEEASSTGGEDTASSPACVQPLRQQ 178
           LDS A  GP                QQ   C+  +  E + +  E        VQP  QQ
Sbjct: 31  LDSLASKGPEALQEFQQTATTTMVYQQGGNCIYTDSTEVAGSLLELACPVTTSVQPQTQQ 90

Query: 179 RKNINIHH-QFVREIVKIQHDREQFDREQAGRQIHTQKAATLP 304
            + I +   Q V+  V++Q   +Q   +Q   Q    + A  P
Sbjct: 91  EQQIQVQQPQQVQVQVQVQQSPQQVSAQQLSPQFTVHQPAEQP 133


>sp|Q9VXG1|HANG_DROME Zinc finger protein hangover OS=Drosophila
            melanogaster GN=hang PE=1 SV=3
          Length = 1913

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
 Frame = +2

Query: 23   IDKDGGSSLDSTAGTGPQQSN--------GCVPVEDEEASSTGGEDT--ASSPACVQPLR 172
            +D+D     D ++GTG    +        G    EDEE     GED      PA + P +
Sbjct: 1643 LDEDSSGDDDDSSGTGDDDDDDDSDDDEDGEGEDEDEEGDGGEGEDEEGVQPPAQLLPQQ 1702

Query: 173  QQRKNINIHH---QFVREIVKIQHDRE 244
            Q + ++N++      V E++    D +
Sbjct: 1703 QHKTDLNLNQDDDDLVEEVISSDDDED 1729


>sp|P06786|TOP2_YEAST DNA topoisomerase 2 OS=Saccharomyces cerevisiae
            GN=TOP2 PE=1 SV=2
          Length = 1428

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
 Frame = +2

Query: 26   DKDGGSSLDSTAGTGPQQSNGCVPVEDEEASSTGGEDTASSPACVQPLRQQRKNINIHHQ 205
            DK G +S  S   T P+Q +    V  ++  +T  +         +P+R+Q+K + +  +
Sbjct: 1301 DKMGSTSATSKENT-PEQDD----VATKKNQTTAKKTAVKPKLAKKPVRKQQKVVELSGE 1355

Query: 206  FVREIVKIQHDREQFDRE------QAGRQIHTQKAATLPQ 307
               EI+    DRE  +++      Q  R+  + +AA++P+
Sbjct: 1356 SDLEILDSYTDREDSNKDEDDAIPQRSRRQRSSRAASVPK 1395


>sp|Q9V727|ASX_DROME Polycomb protein Asx OS=Drosophila melanogaster
            GN=Asx PE=1 SV=1
          Length = 1669

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = +2

Query: 125  GGEDTASSPACVQPLRQQRKNINIHHQFVREIV-KIQHDREQFDREQAGRQIHTQKAATL 301
            G ++       V+ + ++++ I+   + VREIV K+Q  ++Q +++Q  +Q+H Q    L
Sbjct: 826  GDQEEDEDDEVVECMTEEQQLIDEDSEAVREIVDKLQQHQQQQNQQQHHQQLHIQDVVQL 885

Query: 302  PQ 307
             Q
Sbjct: 886  AQ 887


>sp|Q99MD9|NASP_MOUSE Nuclear autoantigenic sperm protein OS=Mus
           musculus GN=Nasp PE=1 SV=2
          Length = 773

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 20  TIDKDGGSSLDSTAGTGPQQSNGCVPVEDEEASSTGGEDTASSPA 154
           T  KDG S  +  A   P+Q    +PVE+ EA+  G E   +  A
Sbjct: 389 TETKDGSSVEEVKAELVPEQEEAMLPVEESEAAGDGVETKVAQKA 433


>sp|O95153|RIMB1_HUMAN Peripheral-type benzodiazepine
           receptor-associated protein 1 OS=Homo sapiens GN=BZRAP1
           PE=1 SV=2
          Length = 1857

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 35  GGSSLDSTAGTGPQQSNGCVPVEDEEASSTGGEDTASSPACVQP 166
           G  S     GT P+ +  C+P   ++ASS+G       PAC +P
Sbjct: 65  GDGSSRPVGGTDPEGAEACLPSLGQQASSSG-------PACQRP 101
tr_hit_id Q23DH8
Definition tr|Q23DH8|Q23DH8_TETTH DNA-directed RNA polymerase, omega subunit family protein OS=Tetrahymena thermophila SB210
Align length 63
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920956|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_G10.
         (363 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q23DH8|Q23DH8_TETTH DNA-directed RNA polymerase, omega subuni...    38   0.29 
tr|Q7SI56|Q7SI56_NEUCR Predicted protein OS=Neurospora crassa GN...    35   1.4  
tr|Q6MUQ2|Q6MUQ2_NEUCR Putative uncharacterized protein B22I21.1...    35   1.4  
tr|Q5CKI5|Q5CKI5_CRYHO Bromodomain OS=Cryptosporidium hominis GN...    35   1.9  
tr|B4N5Z0|B4N5Z0_DROWI GK17968 OS=Drosophila willistoni GN=GK179...    35   2.5  
tr|Q4Q6M7|Q4Q6M7_LEIMA Putative uncharacterized protein OS=Leish...    34   4.2  
tr|B4NHP9|B4NHP9_DROWI GK14233 OS=Drosophila willistoni GN=GK142...    33   7.2  
tr|A4I817|A4I817_LEIIN Putative uncharacterized protein OS=Leish...    33   7.2  
tr|Q9ZAX3|Q9ZAX3_MYCBO 63 kDa protein OS=Mycobacterium bovis PE=...    33   9.3  
tr|Q5CQH9|Q5CQH9_CRYPV ZnKn (C2HC)+Athook+bromo domain protein, ...    33   9.3  
tr|B0ZPZ9|B0ZPZ9_DROMX Scute (Fragment) OS=Drosophila melanica G...    33   9.3  

>tr|Q23DH8|Q23DH8_TETTH DNA-directed RNA polymerase, omega subunit
            family protein OS=Tetrahymena thermophila SB210
            GN=TTHERM_00047130 PE=4 SV=1
          Length = 4331

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
 Frame = +2

Query: 173  QQRKNI-------NIHHQFVREIVKIQHDREQFDREQAGRQIHTQKAATLPQ--VGRKSS 325
            QQ KNI       NI   F R  +K+QH R++ D+EQA + I  +K   + Q   GR  S
Sbjct: 977  QQLKNILNEEELDNIDDGFERIQIKLQHARQELDQEQANKIIELEKKLLIKQDETGRLES 1036

Query: 326  DIK 334
             IK
Sbjct: 1037 QIK 1039


>tr|Q7SI56|Q7SI56_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU00595 PE=4 SV=2
          Length = 675

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 119 STGGEDTASSPACVQPLRQQRKNINIHHQFVREIVKIQHDR--EQFDREQAGRQIHTQK- 289
           S GG  + SSPA +  L  Q+++ + HH    +  + QH R   Q  R Q+   IH Q+ 
Sbjct: 152 SVGGSTSPSSPASISQLPPQQQHHHHHHHQHPQQQQYQHSRFDSQVPRYQSPSSIHQQQH 211

Query: 290 AATLPQVGRKSSDIKAS 340
              +  +G   SD+ A+
Sbjct: 212 HIKMEAIGDDHSDLAAA 228


>tr|Q6MUQ2|Q6MUQ2_NEUCR Putative uncharacterized protein B22I21.140
           OS=Neurospora crassa GN=B22I21.140 PE=4 SV=1
          Length = 680

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 119 STGGEDTASSPACVQPLRQQRKNINIHHQFVREIVKIQHDR--EQFDREQAGRQIHTQK- 289
           S GG  + SSPA +  L  Q+++ + HH    +  + QH R   Q  R Q+   IH Q+ 
Sbjct: 152 SVGGSTSPSSPASISQLPPQQQHHHHHHHQHPQQQQYQHSRFDSQVPRYQSPSSIHQQQH 211

Query: 290 AATLPQVGRKSSDIKAS 340
              +  +G   SD+ A+
Sbjct: 212 HIKMEAIGDDHSDLAAA 228


>tr|Q5CKI5|Q5CKI5_CRYHO Bromodomain OS=Cryptosporidium hominis
            GN=Chro.40082 PE=4 SV=1
          Length = 1966

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +2

Query: 29   KDGGSSLDSTAGTGPQQSNGCVPVEDEEASSTGGEDTASSPACVQPLRQQR----KNINI 196
            K GGSS  S +GT P+      P+E+ E+ +        +P    P RQ+     +N N+
Sbjct: 778  KTGGSSTSSQSGTFPKFFGVNYPLEENESMAVLETGLFKAPIYHHPRRQRNLQAGENTNM 837

Query: 197  HHQFVREIVKIQHDREQFDREQAGR 271
                    +K   D E+ DR   G+
Sbjct: 838  EDGGEASFIKDDEDEEERDRSGKGK 862


>tr|B4N5Z0|B4N5Z0_DROWI GK17968 OS=Drosophila willistoni GN=GK17968
           PE=4 SV=1
          Length = 1039

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
 Frame = +2

Query: 35  GGSSLDSTAGTGPQQSNGCV------PVEDEEASSTGGEDTASSPA--CVQPL----RQQ 178
           G SSLD+     P  +N  V       ++ E    TG E+   S    C + L     Q 
Sbjct: 144 GNSSLDAATSAAPHTANDKVLASLEKQLQIEMKVKTGAENMIHSLGIGCDKKLLAEAHQM 203

Query: 179 RKNINIHHQFVR-EIVKIQHDREQFDREQAGRQIH 280
             +     +F+R  I+K++ +REQ DR +A RQ+H
Sbjct: 204 LADSKTKIEFLRLRIIKVKQNREQADRLKASRQLH 238


>tr|Q4Q6M7|Q4Q6M7_LEIMA Putative uncharacterized protein OS=Leishmania
            major GN=LmjF31.0360 PE=4 SV=1
          Length = 991

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = +2

Query: 17   CTIDKDGGSSLDSTAGTGPQQSNGCVPVEDEEASSTGGEDTASSPACVQP 166
            C  D DG S LD  + + P           E+ SSTGG D A   A   P
Sbjct: 912  CGRDSDGSSGLDGASSSTPADIMPAATAFSEDDSSTGGVDAAVRDAAAPP 961


>tr|B4NHP9|B4NHP9_DROWI GK14233 OS=Drosophila willistoni GN=GK14233
           PE=4 SV=1
          Length = 936

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 110 EASSTGGEDTASSPACVQPLRQQRKNINIHHQFVREIVKI 229
           + S +G ED  + P C QP R+   +++  H+  R+ VKI
Sbjct: 714 KGSGSGSEDEVTKPTCAQPKRKSSASLSSLHRQWRQCVKI 753


>tr|A4I817|A4I817_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ32.2450 PE=4 SV=1
          Length = 476

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 56  TAGTGPQQSNGCVPVEDEEA---SSTGGEDTASSPACVQPLRQQRKNINIH 199
           +  +  Q   G +P++ +E    S T G DT S+PAC +PL+  R  +N H
Sbjct: 6   SGSSAEQPLKGILPLDTKECQRNSPTQG-DTKSTPACYEPLKLLRDQLNAH 55


>tr|Q9ZAX3|Q9ZAX3_MYCBO 63 kDa protein OS=Mycobacterium bovis PE=4
           SV=1
          Length = 586

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = +2

Query: 134 DTASSPACVQPLRQQRK-NINIHHQ-FVREIVKIQHDREQFDREQAGRQIHTQK----AA 295
           D    P   QPL Q R+ +++  HQ F  E +K +H  E  D  +  R  H  +    AA
Sbjct: 111 DLQLQPPLRQPLAQLRQLDVDDAHQLFGVETLKDEHVVEPVDELRLERSAHRGQHLLGAA 170

Query: 296 TLPQVGRKSSDIKASI 343
           T PQVGR+  D  A +
Sbjct: 171 TRPQVGRQDQDGVAEV 186


>tr|Q5CQH9|Q5CQH9_CRYPV ZnKn (C2HC)+Athook+bromo domain protein,
            Taf250, transcription initiation factor IID
            OS=Cryptosporidium parvum Iowa II GN=cgd4_650 PE=4 SV=1
          Length = 1965

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = +2

Query: 29   KDGGSSLDSTAGTGPQQSNGCVPVEDEEASSTGGEDTASSPACVQPLRQQR----KNINI 196
            K  GSS  S +GT P+      P+E+ E+ +        +P    P RQ+     +N N+
Sbjct: 778  KTSGSSTSSQSGTFPKFFGVNYPLEENESMAVLETGLFKAPIYHHPRRQRNLQVGENTNM 837

Query: 197  HHQFVREIVKIQHDREQFDREQAGR 271
                    +K   D E+ DR   G+
Sbjct: 838  EDGGEASFIKDDEDEEERDRSGKGK 862