BP920960
Clone id YMU001_000143_H02
Library
Length 204
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000143_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TAACAAAATCGTAACGTCGGAATACAACAAAAATAGCCGAGTGCAGAGATTTTACAACGA
CATATATTGTTCAACCCAGATTAATCACTAGGTTGTACCTACAAATTTGTGCACGTGATG
TGTTCACTAATATACTGTATAAAGTCGTGGGTTCAAGCCCCCTGAATCATCTGCATAATG
TGTATACTCATTCATTTCTCCTTT
■■Homology search results ■■ -
sp_hit_id Q3ZJ92
Definition sp|Q3ZJ92|RPOC1_PSEAK DNA-directed RNA polymerase subunit beta' OS=Pseudendoclonium akinetum
Align length 22
Score (bit) 29.3
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920960|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_H02.
(204 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3ZJ92|RPOC1_PSEAK DNA-directed RNA polymerase subunit beta' ... 29 6.4

>sp|Q3ZJ92|RPOC1_PSEAK DNA-directed RNA polymerase subunit beta'
OS=Pseudendoclonium akinetum GN=rpoC1 PE=3 SV=1
Length = 1578

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2

Query: 2 NKIVTSEYNKNSRVQRFYNDIY 67
NK+ + +N RVQRFYND Y
Sbjct: 1088 NKLYQTVLFRNKRVQRFYNDYY 1109


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920960|Adiantum capillus-veneris mRNA, clone:
YMU001_000143_H02.
(204 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******