BP920977
Clone id YMU001_000144_A12
Library
Length 449
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTCTCTCTCTCTCTCTCTCGGCAATACTACACAGAGCTACAAATTGCGCTGTGGAATTGC
AATGACTCAGCACCCACAGAGACTACTCTATCCAAGGTGGTACAAATGCGTCTTTGTTTC
GCACGGGAGGCCCCACTGAGCTAGTAACACGATCCCCTCAAGCCTAGCCTGCACGTTCGC
GTGTTATTGACCCCCACTGTTTACATCCTTCACAAGCACTGTTTGGTAACAATGCAATTT
CTTCAGGTCCGCGTGCCCGAAACGCCTTAAGCTAGTTGGCATGCTAACTGTGTTGCACGT
ACTCCAACCAATCAAATGCCAATACAATCTACAACTGCTTCCTTTTCTCCTTGTGTGTGA
ATGACACAGTTAAACGGTGGTTCTATGTCTGGGTGGCAAACGGCAGAAGCTCAATTGTGC
AATCTGAACATAGGTTGTTGACCAATGAA
■■Homology search results ■■ -
sp_hit_id P52342
Definition sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI)
Align length 45
Score (bit) 32.0
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920977|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_A12.
(449 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (stra... 32 1.2
sp|P59510|ATS20_HUMAN A disintegrin and metalloproteinase with t... 31 2.1
sp|P59511|ATS20_MOUSE A disintegrin and metalloproteinase with t... 29 8.0

>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain
JI) GN=U38 PE=3 SV=1
Length = 1012

Score = 32.0 bits (71), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2

Query: 242 FRSACPKRLKLVGMLTVLHVLQ-----PIKCQYNLQLLPFLLVCE 361
F++ CPK LK + H+ PIK ++ L P +L+C+
Sbjct: 747 FKNVCPKALKRIAPSIASHITNTLFKHPIKLEFEKILFPLILICK 791


>sp|P59510|ATS20_HUMAN A disintegrin and metalloproteinase with
thrombospondin motifs 20 OS=Homo sapiens GN=ADAMTS20 PE=2
SV=2
Length = 1910

Score = 31.2 bits (69), Expect = 2.1
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = -3

Query: 354 TRRKGSSCRLYWHLIGWSTCNTVSMPTSLRRFGHADLKKLHCYQTVLVKDVNSGGQ*HAN 175
T+ + C L WH+IG S C++ H +H QTV V D G Q
Sbjct: 897 TQSCNTDCELRWHVIGKSECSSQCGQGYRTLDIHCMKYSIHEGQTVQVDDHYCGDQLKPP 956

Query: 174 VQARLEGIVLLAQW 133
Q G + +W
Sbjct: 957 TQELCHGNCVFTRW 970


>sp|P59511|ATS20_MOUSE A disintegrin and metalloproteinase with
thrombospondin motifs 20 OS=Mus musculus GN=Adamts20 PE=2
SV=1
Length = 1906

Score = 29.3 bits (64), Expect = 8.0
Identities = 20/74 (27%), Positives = 28/74 (37%)
Frame = -3

Query: 354 TRRKGSSCRLYWHLIGWSTCNTVSMPTSLRRFGHADLKKLHCYQTVLVKDVNSGGQ*HAN 175
T + C L WH+IG S C++ H +H Q V V D G Q
Sbjct: 893 TEKCNMDCELRWHIIGKSDCSSQCGQGYRTLDVHCMKYSVHKGQAVPVGDQYCGDQLKPP 952

Query: 174 VQARLEGIVLLAQW 133
+ G +L +W
Sbjct: 953 SREPCHGSCVLTRW 966


tr_hit_id Q6RBZ1
Definition tr|Q6RBZ1|Q6RBZ1_CHLRE Circadian RNA-binding protein CHLAMY 1 subunit C1 (Fragment) OS=Chlamydomonas reinhardtii
Align length 66
Score (bit) 33.1
E-value 7.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920977|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_A12.
(449 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6RBZ1|Q6RBZ1_CHLRE Circadian RNA-binding protein CHLAMY 1 su... 33 7.2
tr|A8HYR6|A8HYR6_CHLRE C1, subunit of the circadian RNA-binding ... 33 7.2
tr|A5A750|A5A750_PIG ADAM metallopeptidase with thrombospondin t... 33 9.4

>tr|Q6RBZ1|Q6RBZ1_CHLRE Circadian RNA-binding protein CHLAMY 1
subunit C1 (Fragment) OS=Chlamydomonas reinhardtii PE=2
SV=1
Length = 488

Score = 33.1 bits (74), Expect = 7.2
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = -3

Query: 315 LIGWSTCNTVSMPTSLRRFGHADLKKLHCYQTVLVKDVNSGGQ*HANVQARLEGIVLLAQ 136
LIG NT + ++RFG + L C +T++ + + GG+ ++Q R + + Q
Sbjct: 244 LIGGEHANTSQV---VQRFGVGSTEVLECPKTMVGRIIGKGGETIKDLQKRFNASIQIDQ 300

Query: 135 WGLPCE 118
+PC+
Sbjct: 301 SAMPCK 306


>tr|A8HYR6|A8HYR6_CHLRE C1, subunit of the circadian RNA-binding
protein CHLAMY 1 OS=Chlamydomonas reinhardtii GN=CRB1
PE=4 SV=1
Length = 511

Score = 33.1 bits (74), Expect = 7.2
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = -3

Query: 315 LIGWSTCNTVSMPTSLRRFGHADLKKLHCYQTVLVKDVNSGGQ*HANVQARLEGIVLLAQ 136
LIG NT + ++RFG + L C +T++ + + GG+ ++Q R + + Q
Sbjct: 267 LIGGEHANTSQV---VQRFGVGSTEVLECPKTMVGRIIGKGGETIKDLQKRFNASIQIDQ 323

Query: 135 WGLPCE 118
+PC+
Sbjct: 324 SAMPCK 329


>tr|A5A750|A5A750_PIG ADAM metallopeptidase with thrombospondin type
1 motif 20 (Fragment) OS=Sus scrofa GN=ADAMTS20 PE=2
SV=1
Length = 1314

Score = 32.7 bits (73), Expect = 9.4
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = -3

Query: 354 TRRKGSSCRLYWHLIGWSTCNTVSMPTSLRRFGHADLKKLHCYQTVLVKDVNSGGQ*HAN 175
T R + C L WH+ G S C+++ H +H QTV V D G Q
Sbjct: 299 TERCNTDCELRWHITGKSECSSLCGQGYKSLDIHCMKYSIHKGQTVPVDDRYCGDQLKPP 358

Query: 174 VQARLEGIVLLAQW 133
+ G +L +W
Sbjct: 359 TREPCHGDCVLTRW 372