NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920978
Clone id YMU001_000144_B01
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATACCTTTCCCAAAAAGCAATGTGCTTCATCCTCAGCACTTGACTTACATCGTCCAGAA
CGCGCATGTACGAATCCCAAACTACTTCCTGGATGTACTCGTCATCCAAGCAACCAGCCA
AGGGAAGCTATTTGTCCCCTTTTTGCGCTGAACAGCCATATCTCCTTTCTTTGAGTCATC
CCCACCATCAGTCCTCATCGAACTATCGAAATATCTCCTGACCTCACGGAGTTGTCCCTT
GCTCCTCTCCGAACCTTCACCGTTAGTGCGGCATGGAGGAATCCACCGTGCATCTATGGC
TGTTGGTAGTGTCGCCCACTGCGCATTCGTTCCTCCTTCGGGCATTCCCTATGTAACTCT
CCACAACATTTTCTCCCCGCTGAATTTCATTCCCTTGCATCGATTTTCCTTGCAACACCT
GTCGAGTACCAACCATGCTAGCAGCATGACCATAATCAGCGTGACCCCACTCTTCACTTG
GGAGCCCCACGCCCGTAGCCCTGCTAGCAATCC
■■Homology search results ■■ -
sp_hit_id Q03319
Definition sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe
Align length 46
Score (bit) 30.8
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920978|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_B01.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS...    31   3.9  
sp|Q9QYM0|MRP5_RAT Multidrug resistance-associated protein 5 OS=...    30   5.1  
sp|Q3U2K0|K1931_MOUSE Uncharacterized protein KIAA1931 OS=Mus mu...    30   5.1  
sp|O05023|Y493_HAEIN Uncharacterized transposase-like protein HI...    30   6.5  

>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1
           OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2
          Length = 719

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 106 PSNQPREAICPLFA-LNSHISFL*VIPTISPHRTIEISPDLTELSL 240
           PSN P+   CPLFA L         +P ++ HR + +S ++ E S+
Sbjct: 332 PSNLPQIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSV 377


>sp|Q9QYM0|MRP5_RAT Multidrug resistance-associated protein 5
           OS=Rattus norvegicus GN=Abcc5 PE=2 SV=1
          Length = 1436

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -1

Query: 327 NAQWATLPTAIDARWIPPCRTNGEGSERSKGQLREVRRYFDSSMRTDGGDDSKKGDMAVQ 148
           N  +AT+   +     PP   N +  E S  Q  + +     S++ +    S++G +   
Sbjct: 774 NGDYATIFNNLLLGETPPVEINSK-KEASGSQKSQDKGPKPGSVKKEKAVKSEEGQLVQV 832

Query: 147 RKKGTNSFPWLVAWM 103
            +KG  S PW V W+
Sbjct: 833 EEKGQGSVPWSVYWV 847


>sp|Q3U2K0|K1931_MOUSE Uncharacterized protein KIAA1931 OS=Mus
           musculus GN=Kiaa1931 PE=2 SV=2
          Length = 892

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 18/88 (20%), Positives = 34/88 (38%)
 Frame = -1

Query: 348 GMPEGGTNAQWATLPTAIDARWIPPCRTNGEGSERSKGQLREVRRYFDSSMRTDGGDDSK 169
           G+PE G   +  T+P      W+   +     SE S  ++   ++     + T G     
Sbjct: 649 GIPENGLVRRLNTVPNLSRVIWVKTPKPGNPSSEESSKEVPSCKQELSEPVATGGKPKKS 708

Query: 168 KGDMAVQRKKGTNSFPWLVAWMTSTSRK 85
           K   +  +K   +  PW  A + ++  K
Sbjct: 709 KRQGSQAKKTLASPAPWSPANLEASGAK 736


>sp|O05023|Y493_HAEIN Uncharacterized transposase-like protein
           HI0493 OS=Haemophilus influenzae GN=HI0493 PE=3 SV=1
          Length = 118

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 463 HADYGHAASMVGTRQVLQGKSMQGNEIQRG----ENVVESYIGNARRRNEC 323
           H+D G    MVG + +L+  S+Q N  ++G     N +E++ G  R + EC
Sbjct: 39  HSDQGWLYQMVGYQAILRENSIQQNMSRKGNYLDNNAMENFFG--RLKTEC 87
tr_hit_id B2ABK0
Definition tr|B2ABK0|B2ABK0_PODAN Predicted CDS Pa_1_21113 OS=Podospora anserina
Align length 87
Score (bit) 35.8
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920978|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_B01.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2ABK0|B2ABK0_PODAN Predicted CDS Pa_1_21113 OS=Podospora ans...    36   1.3  
tr|Q7SEL2|Q7SEL2_NEUCR Putative uncharacterized protein OS=Neuro...    34   4.8  
tr|B8AIW7|B8AIW7_ORYSI Putative uncharacterized protein OS=Oryza...    33   8.3  
tr|A3A3S9|A3A3S9_ORYSJ Putative uncharacterized protein OS=Oryza...    33   8.3  

>tr|B2ABK0|B2ABK0_PODAN Predicted CDS Pa_1_21113 OS=Podospora
           anserina PE=4 SV=1
          Length = 226

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -1

Query: 396 KGMKFSGEKMLWRVT*GMPEGGTNAQWATLPTAIDARWIPPCRTNGEGSERSKGQLRE-V 220
           +G    GE+ L +++   P G  N    T  T+  A   PP  T  EG ER +G LR+  
Sbjct: 102 EGSLLRGEERLAKLSSERPAGDENEAAGTSFTSFSAELSPPPETKEEGEERWRGFLRDRF 161

Query: 219 RRYFDSSMRTDGGDDSKKGDMAVQRKK 139
            R  D     D  DD  + D   +R++
Sbjct: 162 VRGEDEDFEYDEVDDRDELDELERRER 188


>tr|Q7SEL2|Q7SEL2_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU02800 PE=4 SV=2
          Length = 872

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -3

Query: 511 IASRATGVGLPSEEWGHADYGHAASMVGTRQVLQGKSMQGNE 386
           +A R  GVG P+  WG    G+AA  +G R+ +QG++++  E
Sbjct: 818 MAGRGRGVGGPANRWGDGAAGNAA--MGPREAVQGRTIKSYE 857


>tr|B8AIW7|B8AIW7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06097 PE=4 SV=1
          Length = 997

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
 Frame = -1

Query: 381 SGEKMLWRVT*GMPEGGTNAQWATLPTAI---DARWIPPCRTNGEGSERSK------GQL 229
           SG+ +L  V     EG T  +W T P  +     RW+PP   +    ER K      G+ 
Sbjct: 408 SGDSILLEVNCDSKEGDTLQRWRTEPFIMITGSGRWVPPALPSSRSPEREKESTFAAGRS 467

Query: 228 R--EVRRYFDSSMRTDGGD 178
           R  EV R    S R +  D
Sbjct: 468 RRVEVERTLTDSQRDEFED 486


>tr|A3A3S9|A3A3S9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005451 PE=3 SV=1
          Length = 1379

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
 Frame = -1

Query: 381 SGEKMLWRVT*GMPEGGTNAQWATLPTAI---DARWIPPCRTNGEGSERSK------GQL 229
           SG+ +L  V     EG T  +W T P  +     RW+PP   +    ER K      G+ 
Sbjct: 401 SGDSILLEVNCDSKEGDTLQRWRTEPFIMITGSGRWVPPALPSSRSPEREKESTFAAGRS 460

Query: 228 R--EVRRYFDSSMRTDGGD 178
           R  EV R    S R +  D
Sbjct: 461 RRVEVERTLTDSQRDEFED 479