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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920991
Clone id YMU001_000144_C04
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAGAGAGAGAGAGAGAGAAGGGAGAAGGAGACGGGGGATATAAGATTA
CACTTGGTTACAACTAAAATAATCATTGTCAATTGATTAACATAATTGAGCATATTCTCA
AATCTAAAGAGAGGAAGAGAGAGATGAATGGATTACACGACCAAAAAACTTCATAACTGC
AAAATGTTTATGAATCATCTTCCAAAAGATCTCCAGATGAAGCATCATCCAATTCTAAGC
CCATGGCTCCTAAATCAATAAAGAGAGAAACGGAATTGTCGTTAAAAGGCCCATGAAGAA
ATGGAGAACTTCAGCTTGAGAGAATGCGGCCCTCGAGAATGCAGTAAGCTTGAGGAGGGA
AAGGAGGTTCAAACTTCTGCTCTGCTGCAGAGCTTTTGGGAGGGAAATTTGAAAGGAAGG
AAAGAGAAGCGACTTGCACGATGATGCATTGCCTTCATCATCTTCGAGTTCGTTAAATCC
TCCATCTCATCCTCTTCATCATCGTGACAATCATCCTCGCT
■■Homology search results ■■ -
sp_hit_id Q6PCS4
Definition sp|Q6PCS4|RHG29_DANRE Rho GTPase-activating protein 29 OS=Danio rerio
Align length 99
Score (bit) 37.7
E-value 0.033
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920991|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_C04.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PCS4|RHG29_DANRE Rho GTPase-activating protein 29 OS=Danio ...    38   0.033
sp|P26359|MSH3_SCHPO DNA mismatch repair protein msh3 OS=Schizos...    30   6.9  

>sp|Q6PCS4|RHG29_DANRE Rho GTPase-activating protein 29 OS=Danio
           rerio GN=arhgap29 PE=2 SV=1
          Length = 1337

 Score = 37.7 bits (86), Expect = 0.033
 Identities = 25/99 (25%), Positives = 40/99 (40%)
 Frame = +3

Query: 135 KREMNGLHDQKTS*LQNVYESSSKRSPDEASSNSKPMAPKSIKRETELSLKGP*RNGELQ 314
           KR  N       +  Q    S    S DE   N +P   K  +R +  S+       ++Q
Sbjct: 522 KRSQNSTRSSHGNLSQGSATSMDNHSADEVEGNMQPCKAKIAERRSNSSI-------DMQ 574

Query: 315 LERMRPSRMQ*A*GGKGGSNFCSAAELLGGKFERKEREA 431
           + R + S+   + G  GG   CS +E  GG  E +  ++
Sbjct: 575 VPRTQGSQRAWSSGSAGGGGMCSDSESAGGSSESRSMDS 613


>sp|P26359|MSH3_SCHPO DNA mismatch repair protein msh3
           OS=Schizosaccharomyces pombe GN=msh3 PE=2 SV=1
          Length = 993

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
 Frame = +3

Query: 63  LGYN*NNHCQLINIIEHILKSKERKREMNGLHDQKTS*LQ-NVYESSSKRSPDEASSNSK 239
           + YN  + C  INI+   L       +M  L       L+ NV  S +    DE SS+  
Sbjct: 4   MSYNITHECDAINILSDNLHEGAISEDMVALSGPAIELLENNVGSSKNSYQEDEGSSSID 63

Query: 240 PMAPK-SIKRETELSLKGP*RNGEL-QLERMRPSRMQ 344
             AP  SIKR+  +       N EL Q +  +P++ +
Sbjct: 64  ENAPLISIKRKRRIRTVKSTSNKELVQRKASKPTKQK 100
tr_hit_id B0UYG6
Definition tr|B0UYG6|B0UYG6_DANRE Novel protein (Zgc:63950) OS=Danio rerio
Align length 99
Score (bit) 37.7
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920991|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_C04.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0UYG6|B0UYG6_DANRE Novel protein (Zgc:63950) OS=Danio rerio ...    38   0.34 
tr|B3DXT7|B3DXT7_METI4 Cellulase M or related protein OS=Methyla...    33   6.5  

>tr|B0UYG6|B0UYG6_DANRE Novel protein (Zgc:63950) OS=Danio rerio
           GN=CH211-195I6.1 PE=4 SV=1
          Length = 1337

 Score = 37.7 bits (86), Expect = 0.34
 Identities = 25/99 (25%), Positives = 40/99 (40%)
 Frame = +3

Query: 135 KREMNGLHDQKTS*LQNVYESSSKRSPDEASSNSKPMAPKSIKRETELSLKGP*RNGELQ 314
           KR  N       +  Q    S    S DE   N +P   K  +R +  S+       ++Q
Sbjct: 522 KRSQNSTRSSHGNLSQGSATSMDNHSADEVEGNMQPCKAKIAERRSNSSI-------DMQ 574

Query: 315 LERMRPSRMQ*A*GGKGGSNFCSAAELLGGKFERKEREA 431
           + R + S+   + G  GG   CS +E  GG  E +  ++
Sbjct: 575 VPRTQGSQRAWSSGSAGGGGMCSDSESAGGSSESRSMDS 613


>tr|B3DXT7|B3DXT7_METI4 Cellulase M or related protein
           OS=Methylacidiphilum infernorum (isolate V4) GN=frvX
           PE=4 SV=1
          Length = 365

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -2

Query: 265 LFIDLGAMGLE--LDDASSGDLLEDDS*TFCSYEVFW---SCNPFISLFLSLD-LRICS 107
           LFID+GA   +  L+    GDL+  DS  FC     W    C+  +  F++ + LRICS
Sbjct: 135 LFIDIGASSRDEALEHVQVGDLVLYDSEAFCLLNDIWISRGCDDKVGAFVAAEVLRICS 193