BP920997 |
Clone id |
YMU001_000144_D02 |
Library |
YMU01 |
Length |
534 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000144_D02. |
Accession |
BP920997 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL10Contig1 |
Sequence |
CTACGCCTCTCGGCCTGATCTTAGGACCTGACTCACCCTCCGTGGACGAACCTTGCGGAG GAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGACA TTCTCGCTTCCGCTTCGTCCACACCTGCTCGCACTGGTGCTTCCATCTGGGGCGGAACGC TCCCCTACCGATGTTTTTTGACATCCCACAGCTTCGGCAGACCGCTTAGTCCCGCTCATC TTCGGCGCAAGAGCGCTTGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTC TAGGCAAACCTCCTGGCTGTCTTTGCACTCCTACCTCCTTTACCACTGAGCGGTCATTTA GGGGCCTTAGCTGGTGATCTGGGCTGTTCCCCTCTCGACGGTGAAGCTTATCCCTCATCG TCTCACTGGTTGACCCTTTTCCTTCGTTCCTTTTACTTGAACGTTACATCTAGTATTCAG AGTTTGCCTCGATTTGGTACCGCTCTCGCAGCCCGCACCGGAACGGTGCTTTAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q80WV7 |
Definition |
sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus |
Align length |
120 |
Score (bit) |
33.5 |
E-value |
0.66 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6N1H4 |
Definition |
tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica |
Align length |
56 |
Score (bit) |
103.0 |
E-value |
5.0e-28 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920997|Adiantum capillus-veneris mRNA, clone: YMU001_000144_D02. (534 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s... 103 5e-28 tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic... 97 2e-25 tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 ... 103 6e-21 tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino... 102 9e-21 tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino... 102 9e-21 tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkh... 80 7e-14 tr|A7QYC6|A7QYC6_VITVI Chromosome undetermined scaffold_244, who... 69 2e-10 tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 55 2e-06 tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b ... 54 4e-06 tr|A1XNB2|A1XNB2_VICSA Putative cysteine synthase Voas-tl5 OS=Vi... 49 1e-04 tr|B1N6J8|B1N6J8_9PROT Putative uncharacterized protein OS=uncul... 49 2e-04 tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea ... 40 3e-04 tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Popul... 44 0.004 tr|B0MGK2|B0MGK2_9FIRM Putative uncharacterized protein OS=Anaer... 32 0.026 tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein OS=Therm... 41 0.045 tr|A8R9P7|A8R9P7_9FIRM Putative uncharacterized protein OS=Eubac... 40 0.098 tr|B7R8W2|B7R8W2_9THEO Putative uncharacterized protein OS=Carbo... 39 0.13 tr|B0TIE5|B0TIE5_HELMI Putative uncharacterized protein OS=Helio... 39 0.17 tr|Q6AV58|Q6AV58_ORYSJ Putative uncharacterized protein OSJNBb01... 37 0.49 tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol... 37 0.63 tr|A8LKH8|A8LKH8_DINSH H+transporting two-sector ATPase B/B' sub... 37 0.65 tr|A7PNG2|A7PNG2_VITVI Chromosome chr1 scaffold_22, whole genome... 37 0.65 tr|B0PCK9|B0PCK9_9FIRM Putative uncharacterized protein OS=Anaer... 37 0.83 tr|B0PBI2|B0PBI2_9FIRM Putative uncharacterized protein OS=Anaer... 37 0.83 tr|B0P654|B0P654_9FIRM Putative uncharacterized protein OS=Anaer... 37 0.83 tr|B4DYX4|B4DYX4_HUMAN cDNA FLJ60980, highly similar to Cell div... 37 0.83 tr|Q9CVL4|Q9CVL4_MOUSE Putative uncharacterized protein (Fragmen... 36 1.1 tr|Q3TNY6|Q3TNY6_MOUSE Putative uncharacterized protein (Fragmen... 36 1.1 tr|Q4Q6C1|Q4Q6C1_LEIMA Putative uncharacterized protein OS=Leish... 36 1.4 tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1 35 1.8
>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica PE=4 SV=1 Length = 109
Score = 103 bits (257), Expect(2) = 5e-28 Identities = 50/56 (89%), Positives = 51/56 (91%) Frame = -3
Query: 442 GKGSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP*KSA 275 G S SETM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP KSA Sbjct: 54 GVRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA 109
Score = 44.7 bits (104), Expect(2) = 5e-28 Identities = 20/35 (57%), Positives = 25/35 (71%) Frame = -1
Query: 534 VKHRSGAGCESGTKSRQTLNTRCNVQVKGTKEKGQ 430 VKH GAGC SGTKSRQTLNTR + ++ G + + Sbjct: 26 VKHCFGAGCASGTKSRQTLNTRYDPKITGVRSASE 60
>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 102
Score = 97.4 bits (241), Expect(2) = 2e-25 Identities = 45/49 (91%), Positives = 46/49 (93%) Frame = -3
Query: 433 STSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP 287 S SE M DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP Sbjct: 54 SASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102
Score = 42.0 bits (97), Expect(2) = 2e-25 Identities = 22/32 (68%), Positives = 23/32 (71%) Frame = -1
Query: 534 VKHRSGAGCESGTKSRQTLNTRCNVQVKGTKE 439 VKH GAG ESGTKSRQTLNTR +VK E Sbjct: 26 VKHCFGAGRESGTKSRQTLNTRYPWRVKSASE 57
>tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 (Fragment) OS=Phillyrea latifolia GN=ophh-69 PE=2 SV=1 Length = 166
Score = 103 bits (257), Expect = 6e-21 Identities = 51/67 (76%), Positives = 55/67 (82%) Frame = -2
Query: 236 SGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIGENPMPRKPKGSS 57 +G + AVGC+ TSVGERSA +GS AS GRSGSENVGLSN NIGENPMPRKPKGSS Sbjct: 100 AGDVQGCRAVGCKNTSVGERSALEGSPRASSGGRSGSENVGLSNANIGENPMPRKPKGSS 159
Query: 56 ARFVHGG 36 ARFVHGG Sbjct: 160 ARFVHGG 166
Score = 99.4 bits (246), Expect = 1e-19 Identities = 50/63 (79%), Positives = 53/63 (84%) Frame = -2
Query: 212 AVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIGENPMPRKPKGSSARFVHGG* 33 AVGC+ TSVGERSA +GS S GRSGSENVGLSN NIGENPMPRKPKGSSA FVHGG Sbjct: 3 AVGCKNTSVGERSALEGSPRVSSGGRSGSENVGLSNANIGENPMPRKPKGSSAWFVHGGS 62
Query: 32 VRS 24 VR+ Sbjct: 63 VRA 65
>tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deinococcus radiodurans GN=DR_0254 PE=4 SV=1 Length = 139
Score = 102 bits (255), Expect = 9e-21 Identities = 63/125 (50%), Positives = 70/125 (56%), Gaps = 3/125 (2%) Frame = +3
Query: 6 PLGLILGPDSPSVDEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIWGGTLP 185 P GL LGPD P D+P GTL + ILT+ VT A I S ST AS P Sbjct: 15 PFGLTLGPDFPWADDPSPGTLVLTAKKILTSFIVTHAGIRTSVGSTTPSGMASPRTERSP 74
Query: 186 YRCFLT---SHSFGRPLSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERS 356 R + S + LSP H RR VSYYALF+GWLLL +PPGCLC TS TTERS Sbjct: 75 TRQLASRVESIASVDHLSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERS 134
Query: 357 FRGLS 371 FR LS Sbjct: 135 FRDLS 139
>tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deinococcus radiodurans GN=DR_2252 PE=4 SV=1 Length = 133
Score = 102 bits (255), Expect = 9e-21 Identities = 63/125 (50%), Positives = 70/125 (56%), Gaps = 3/125 (2%) Frame = +3
Query: 6 PLGLILGPDSPSVDEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIWGGTLP 185 P GL LGPD P D+P GTL + ILT+ VT A I S ST AS P Sbjct: 9 PFGLTLGPDFPWADDPSPGTLVLTAKKILTSFIVTHAGIRTSVGSTTPSGMASPRTERSP 68
Query: 186 YRCFLT---SHSFGRPLSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERS 356 R + S + LSP H RR VSYYALF+GWLLL +PPGCLC TS TTERS Sbjct: 69 TRQLASRVESIASVDHLSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERS 128
Query: 357 FRGLS 371 FR LS Sbjct: 129 FRDLS 133
>tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=BMULJ_05092 PE=4 SV=1 Length = 123
Score = 80.1 bits (196), Expect = 7e-14 Identities = 48/112 (42%), Positives = 57/112 (50%), Gaps = 1/112 (0%) Frame = +3
Query: 15 LILGPDSPSVDEPCGGTLRFSGHWILTNVFVTQADILASASSTPARTGASIWGGTLPYR- 191 L LG DSP DE C G L + T T I S +S+ S GTL Y Sbjct: 12 LALGADSPYADERCVGNLGLTARGPFTPFIATHVSIRTSDTSSTLYKAPSQAYGTLSYHA 71
Query: 192 CFLTSHSFGRPLSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTT 347 C S + L+P HL R++ SVSYYA F+GWLLL +PP C PTSF T Sbjct: 72 CKHASAASVYGLAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCFSLPTSFPT 123
>tr|A7QYC6|A7QYC6_VITVI Chromosome undetermined scaffold_244, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009678001 PE=4 SV=1 Length = 114
Score = 68.9 bits (167), Expect = 2e-10 Identities = 41/79 (51%), Positives = 47/79 (59%) Frame = -2
Query: 272 IAH*SSALAPKMSGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNENIG 93 I H ++ PK+ K + SVGERSA +GST ASR + N NIG Sbjct: 46 INHRGFSILPKLWDVKS-------KNASVGERSALEGSTRASRRVDEAEARI---NANIG 95
Query: 92 ENPMPRKPKGSSARFVHGG 36 ENPMPRKPKGSSARFVHGG Sbjct: 96 ENPMPRKPKGSSARFVHGG 114
>tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprotein OS=Oryza sativa subsp. japonica GN=Os01g0790900 PE=3 SV=1 Length = 1546
Score = 55.5 bits (132), Expect = 2e-06 Identities = 24/29 (82%), Positives = 25/29 (86%) Frame = +3
Query: 171 GGTLPYRCFLTSHSFGRPLSPAHLRRKSA 257 GGTLPYRC LTSHSFGR LSP HL+RK A Sbjct: 603 GGTLPYRCILTSHSFGRSLSPVHLQRKGA 631
>tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b OS=Nicotiana tabacum GN=orf106b PE=4 SV=1 Length = 106
Score = 54.3 bits (129), Expect = 4e-06 Identities = 28/44 (63%), Positives = 32/44 (72%) Frame = +2
Query: 401 VKLIPHRLTG*PFSFVPFT*TLHLVFRVCLDLVPLSQPAPERCF 532 +KLIPHRLT P P +LVFRVCLDLVPLS+PAP+ CF Sbjct: 1 MKLIPHRLTSRPCP--PLILRSYLVFRVCLDLVPLSRPAPKPCF 42
>tr|A1XNB2|A1XNB2_VICSA Putative cysteine synthase Voas-tl5 OS=Vicia sativa PE=4 SV=1 Length = 68
Score = 49.3 bits (116), Expect = 1e-04 Identities = 21/23 (91%), Positives = 21/23 (91%) Frame = +3
Query: 42 VDEPCGGTLRFSGHWILTNVFVT 110 VDEPC G LRFSGHWILTNVFVT Sbjct: 46 VDEPCRGILRFSGHWILTNVFVT 68
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