BP921002
Clone id YMU001_000144_D07
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTCTTGCATATTTCGCTGTAACTATTCAGTATTAGCAAGCCTGTGAGCAGGTTGGGCTCC
AGCCTCTGCGTGATTTTCCTCCTTTTGGCCATCATTACTTTGCACAGGGACCGCTTTTCC
ATACTCATTAAGTCTTGAGCCTTCCATTCTTTCTCCTTGGCGATAGTGACTGCTTCCTCA
AAGGTGGCAGGCCTTTTCAACTCAATTTTGAACTTCAGGCTTTCTTTTAAGTTTGCCACA
AAACGGTCCTTCTTCAACATGGATGGAGGGATTTCATTTCCCAAAGCTCGGGCCCATTTA
TCCCATAAACGGGTGAACTGCATGACAAAATCATCAACACCTTGATTAACCTTTTGAGTG
TACCCCAAAATTTCATGCCAAACTTCATCAGGCACTTCAATGGACGTGTACTGTGCCAAG
AAAGCTTGCTTCACACGATTGTAGTCCTGGAGTTTGTGCATGTACCAACTCTTCATGATT
GTGTAACCAAACTTTTGCCTCATCCAGTT
■■Homology search results ■■ -
sp_hit_id Q8CI11
Definition sp|Q8CI11|GNL3_MOUSE Guanine nucleotide-binding protein-like 3 OS=Mus musculus
Align length 54
Score (bit) 33.5
E-value 0.59
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921002|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_D07.
(509 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8CI11|GNL3_MOUSE Guanine nucleotide-binding protein-like 3 O... 33 0.59
sp|P12304|X92_TRYBB Protein X92 OS=Trypanosoma brucei brucei PE=... 32 1.7
sp|P19884|RELX_MACMU Prorelaxin OS=Macaca mulatta GN=RLN PE=3 SV=1 32 2.3
sp|Q6P1L6|ZN343_HUMAN Zinc finger protein 343 OS=Homo sapiens GN... 31 3.9
sp|Q9BUB5|MKNK1_HUMAN MAP kinase-interacting serine/threonine-pr... 31 3.9
sp|P59027|LEU3_BUCPS 3-isopropylmalate dehydrogenase OS=Buchnera... 26 5.5
sp|Q86UQ0|ZN589_HUMAN Zinc finger protein 589 OS=Homo sapiens GN... 30 6.6
sp|P03219|VTER_EBV Probable DNA packaging protein OS=Epstein-Bar... 30 6.6
sp|Q870Q1|SWC4_NEUCR SWR1-complex protein 4 OS=Neurospora crassa... 30 8.6
sp|Q9K8L9|CRCB2_BACHD Protein crcB homolog 2 OS=Bacillus halodur... 30 8.6

>sp|Q8CI11|GNL3_MOUSE Guanine nucleotide-binding protein-like 3
OS=Mus musculus GN=Gnl3 PE=2 SV=2
Length = 538

Score = 33.5 bits (75), Expect = 0.59
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1

Query: 302 DKWARALGNEIPPSMLKKDRFVANLKESLKFKIELKRPATFEEAVTIAKEKEWK 141
+ W L E+P + K NLK FKI+ K+ F+ + KE WK
Sbjct: 187 ENWLNYLNKELPTVVFKAS---TNLKNRKTFKIKKKKVVPFQSKICCGKEALWK 237


>sp|P12304|X92_TRYBB Protein X92 OS=Trypanosoma brucei brucei PE=4
SV=1
Length = 549

Score = 32.0 bits (71), Expect = 1.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2

Query: 112 GPCAK**WPKGGKSRRGWSPTCSQ 41
GPC++ WP+ GK RRG TCSQ
Sbjct: 461 GPCSRRGWPRSGKRRRG--NTCSQ 482


>sp|P19884|RELX_MACMU Prorelaxin OS=Macaca mulatta GN=RLN PE=3 SV=1
Length = 185

Score = 31.6 bits (70), Expect = 2.3
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 24/91 (26%)
Frame = -1

Query: 275 EIPPSMLKKD--------RFVANLKESLKFKIELKRPA----------------TFEEAV 168
EI PS++ +D FVANL + LK + ++PA +FEE
Sbjct: 71 EIVPSLINQDTETINMMSEFVANLPQELKLTLSERQPALSELQQHVPVLKDSNLSFEEFK 130

Query: 167 TIAKEKEWKAQDLMSMEKRSLCKVMMAKRRK 75
I ++++ +A D E RSL ++R++
Sbjct: 131 KIIRKRQSEATDSSPSELRSLGLDTHSRRKR 161


>sp|Q6P1L6|ZN343_HUMAN Zinc finger protein 343 OS=Homo sapiens
GN=ZNF343 PE=2 SV=1
Length = 599

Score = 30.8 bits (68), Expect = 3.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1

Query: 209 KIELKRPATFEEAVTIAKEKEWKAQDLMSMEKRSLCK-VMMAKRRKITQRLEP 54
K ++ P TF + I E EWK +S E+R+L K VM+ R + EP
Sbjct: 55 KAQIVVPVTFRDVTVIFTEAEWKR---LSPEQRNLYKEVMLENYRNLLSLAEP 104


>sp|Q9BUB5|MKNK1_HUMAN MAP kinase-interacting
serine/threonine-protein kinase 1 OS=Homo sapiens
GN=MKNK1 PE=1 SV=1
Length = 465

Score = 30.8 bits (68), Expect = 3.9
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = -1

Query: 266 PSMLKKDRFVANLKESLKFKIELKRPATFEEAVTIAKEKEWKAQDLMSMEKRSLCKVMMA 87
P +L+++ +L I L R + E +A+E E A L SM+ CK +A
Sbjct: 386 PQVLQRNSSTMDLTLFAAEAIALNRQLSQHEENELAEEPEALADGLCSMKLSPPCKSRLA 445

Query: 86 KRRKITQ 66
+RR + Q
Sbjct: 446 RRRALAQ 452


>sp|P59027|LEU3_BUCPS 3-isopropylmalate dehydrogenase OS=Buchnera
aphidicola subsp. Pemphigus spyrothecae GN=leuB PE=3
SV=1
Length = 363

Score = 25.8 bits (55), Expect(2) = 5.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3

Query: 141 GSRLNEYGKAVPVQSNDGQKEEN 73
G +++YGKA+P ++ DG KE +
Sbjct: 46 GIAIDKYGKALPKETLDGCKESD 68



Score = 23.5 bits (49), Expect(2) = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1

Query: 281 GNEIPPSMLKKDRFVANLKESLKFKI 204
G+ I P +L+KD LKE K KI
Sbjct: 12 GDGIGPELLQKDLNFKVLKEQYKLKI 37


>sp|Q86UQ0|ZN589_HUMAN Zinc finger protein 589 OS=Homo sapiens
GN=ZNF589 PE=1 SV=1
Length = 364

Score = 30.0 bits (66), Expect = 6.6
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1

Query: 191 PATFEEAVTIAKEKEWKAQDLMSMEKRSLCK-VMMAKRRKITQRLE 57
P TFE+ + E EWK +S+E+R+L K VM+ R + E
Sbjct: 34 PVTFEDVAVLFTEAEWKR---LSLEQRNLYKEVMLENLRNLVSLAE 76


>sp|P03219|VTER_EBV Probable DNA packaging protein OS=Epstein-Barr
virus (strain B95-8) GN=BGRF1/BDRF1 PE=3 SV=2
Length = 690

Score = 30.0 bits (66), Expect = 6.6
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Frame = +3

Query: 294 PFIP*TGELHDKIINTLINLLSVPQNFMPN---FIRHFNGR---VLCQESL--------L 431
P I TG D+ + L+ + + P + RH+ R V ESL L
Sbjct: 33 PSIMYTGAKSDRWAHPLVGTIHASNLYCPMLRAYCRHYGPRPVFVASDESLPMFGASPAL 92

Query: 432 HTIVVLEFVHVPTLHDCVTKLLPHP 506
HT V ++ +P L D + +LLP P
Sbjct: 93 HTPVQVQMCLLPELRDTLQRLLPPP 117


>sp|Q870Q1|SWC4_NEUCR SWR1-complex protein 4 OS=Neurospora crassa
GN=swc-4 PE=3 SV=2
Length = 733

Score = 29.6 bits (65), Expect = 8.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3

Query: 162 RQGERMEGSRLNEYGKAVPVQSNDGQKEENHAEAGAQPAHRLANT 28
+QGE + + E G VP++ G+K + A A A A + A +
Sbjct: 640 QQGEGQDQQKKGEEGLVVPIKEGGGEKGQGDAAAAATAAEKEAES 684


>sp|Q9K8L9|CRCB2_BACHD Protein crcB homolog 2 OS=Bacillus halodurans
GN=crcB2 PE=3 SV=1
Length = 134

Score = 29.6 bits (65), Expect = 8.6
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +1

Query: 52 LGSSLCVIFLLLAIITLHRDRFSILIKS*AFHSFSLAIVTASSKVAGLFNSILNFRLSFK 231
LG LC F ++ TL D S+L+ S H FS I A+S G+ ++L + L+ K
Sbjct: 69 LGVGLCGGFTTMS--TLAAD--SVLLYS--HHPFSSLIYVAASLFGGIGFALLGYLLASK 122

Query: 232 FATKR 246
AT+R
Sbjct: 123 IATRR 127


tr_hit_id A1YGR8
Definition tr|A1YGR8|A1YGR8_9BILA Putative gag protein OS=Philodina roseola
Align length 99
Score (bit) 39.3
E-value 0.11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921002|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_D07.
(509 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A1YGR8|A1YGR8_9BILA Putative gag protein OS=Philodina roseola... 39 0.11
tr|B4AFI0|B4AFI0_BACPU DNA repair exonuclease subunit C OS=Bacil... 39 0.19
tr|B3GXI8|B3GXI8_ACTP7 DNA replication inhibitor protein OS=Acti... 37 0.42
tr|A3N0B4|A3N0B4_ACTP2 DNA replication inhibitor protein OS=Acti... 37 0.42
tr|B0BP31|B0BP31_ACTPJ DNA replication inhibitor protein OS=Acti... 37 0.72
tr|B3T257|B3T257_9ZZZZ Putative histidine kinase-, DNA gyrase B-... 35 2.7
tr|A1B7L2|A1B7L2_PARDP Transcriptional regulator, GntR family OS... 35 2.7
tr|Q7XSX7|Q7XSX7_ORYSJ OSJNBb0056F09.19 protein OS=Oryza sativa ... 35 2.7
tr|Q0JEH4|Q0JEH4_ORYSJ Os04g0273100 protein (Fragment) OS=Oryza ... 35 2.7
tr|A3ARU3|A3ARU3_ORYSJ Putative uncharacterized protein OS=Oryza... 35 2.7
tr|Q03I64|Q03I64_STRTD Predicted transcriptional regulator OS=St... 34 3.6
tr|Q9X9M7|Q9X9M7_STRTR Putative transposon protein OS=Streptococ... 34 3.6
tr|Q6W4X0|Q6W4X0_STRTR Putative uncharacterized protein OS=Strep... 34 3.6
tr|B0F820|B0F820_CUCME Putative uncharacterized protein OS=Cucum... 34 3.6
tr|A0CB40|A0CB40_PARTE Chromosome undetermined scaffold_163, who... 34 4.7
tr|Q9LJS7|Q9LJS7_ARATH Copia-like retroelement pol polyprotein-l... 33 6.1
tr|Q84KB1|Q84KB1_CUCME Gag-protease polyprotein OS=Cucumis melo ... 33 6.1
tr|B6AJG3|B6AJG3_9CRYT Putative uncharacterized protein OS=Crypt... 33 6.1
tr|Q3TK27|Q3TK27_MOUSE Putative uncharacterized protein OS=Mus m... 33 8.0
tr|B3JV31|B3JV31_9DELT Histidinol dehydrogenase OS=Geobacter sp.... 33 8.0
tr|B8ARL3|B8ARL3_ORYSI Putative uncharacterized protein OS=Oryza... 33 8.0
tr|A5C7E6|A5C7E6_VITVI Putative uncharacterized protein OS=Vitis... 33 8.0
tr|B2WBA7|B2WBA7_PYRTR Ribosome biogenesis protein Pescadillo OS... 33 8.0
tr|B2W9Z8|B2W9Z8_PYRTR Ran GTP-binding protein OS=Pyrenophora tr... 33 8.0

>tr|A1YGR8|A1YGR8_9BILA Putative gag protein OS=Philodina roseola
PE=4 SV=1
Length = 601

Score = 39.3 bits (90), Expect = 0.11
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Frame = -1

Query: 434 VKQAFLAQYTSIEVPDEVWHEILGYTQKVNQGVDDFVMQFTRLWDKWARALGNEIPPSM- 258
VK+AFL+ + + + ++ YTQ VNQ V F + +L NE P M
Sbjct: 329 VKEAFLSPFHD----ELAFKKLESYTQGVNQPVRSFYNEVLKLC--------NETDPDMS 376

Query: 257 --LKKDRFVANLKESLKFKIELKRPATFEEAVTIAKEKE 147
+K + K +L+++I K+P T ++ + AKE+E
Sbjct: 377 EAMKLRHLLKKAKPTLQYEIRKKKPTTTKQFLEYAKEQE 415


>tr|B4AFI0|B4AFI0_BACPU DNA repair exonuclease subunit C OS=Bacillus
pumilus ATCC 7061 GN=BAT_3070 PE=4 SV=1
Length = 1132

Score = 38.5 bits (88), Expect = 0.19
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = -1

Query: 293 ARALGNEIPPSMLKKDRFVANLKESLKFKIELKRPATFEEAVTIAKEKEWKAQDLMSMEK 114
AR E P +L+K + LKE IE K+ A F+E +I ++K KAQ L+ +K
Sbjct: 334 ARQKKIETEPDLLQKKEQLIQLKE-----IERKKEAAFQEKTSIERQKNEKAQQLLQKKK 388

Query: 113 -----RSLCKVMMAKRRKITQRLE 57
+SL + + K+ ++ LE
Sbjct: 389 EAENLQSLLERALTKQTQLKHELE 412


>tr|B3GXI8|B3GXI8_ACTP7 DNA replication inhibitor protein
OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=seqA PE=4 SV=1
Length = 186

Score = 37.4 bits (85), Expect = 0.42
Identities = 27/105 (25%), Positives = 49/105 (46%)
Frame = -1

Query: 404 SIEVPDEVWHEILGYTQKVNQGVDDFVMQFTRLWDKWARALGNEIPPSMLKKDRFVANLK 225
+IEV DE++H I TQ + + D + + R L + P +L + + LK
Sbjct: 3 TIEVDDELYHYIASRTQAIGESASDILRRLLR--------LPSSPQPFVLVQQNTIDELK 54

Query: 224 ESLKFKIELKRPATFEEAVTIAKEKEWKAQDLMSMEKRSLCKVMM 90
E K K + K+ E+AV K ++ D+ E +++ + +M
Sbjct: 55 ELAKPKAKAKKEDLIEKAV--QKVEKVLKSDVFINESKNVARFLM 97


>tr|A3N0B4|A3N0B4_ACTP2 DNA replication inhibitor protein
OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=seqA PE=4 SV=1
Length = 186

Score = 37.4 bits (85), Expect = 0.42
Identities = 27/105 (25%), Positives = 49/105 (46%)
Frame = -1

Query: 404 SIEVPDEVWHEILGYTQKVNQGVDDFVMQFTRLWDKWARALGNEIPPSMLKKDRFVANLK 225
+IEV DE++H I TQ + + D + + R L + P +L + + LK
Sbjct: 3 TIEVDDELYHYIASRTQAIGESASDILRRLLR--------LPSSPQPFVLVQQNTIDELK 54

Query: 224 ESLKFKIELKRPATFEEAVTIAKEKEWKAQDLMSMEKRSLCKVMM 90
E K K + K+ E+AV K ++ D+ E +++ + +M
Sbjct: 55 ELAKPKAKAKKEDLIEKAV--QKVEKVLKSDVFINESKNVARFLM 97


>tr|B0BP31|B0BP31_ACTPJ DNA replication inhibitor protein
OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=seqA PE=4 SV=1
Length = 186

Score = 36.6 bits (83), Expect = 0.72
Identities = 27/105 (25%), Positives = 48/105 (45%)
Frame = -1

Query: 404 SIEVPDEVWHEILGYTQKVNQGVDDFVMQFTRLWDKWARALGNEIPPSMLKKDRFVANLK 225
+IEV DE++H I TQ + + D + + R L + P +L + LK
Sbjct: 3 TIEVDDELYHYIASRTQAIGESASDILRRLLR--------LPSSPQPFVLVHQNTIDELK 54

Query: 224 ESLKFKIELKRPATFEEAVTIAKEKEWKAQDLMSMEKRSLCKVMM 90
E K K + K+ E+AV K ++ D+ E +++ + +M
Sbjct: 55 ELAKPKAKAKKEDLIEKAV--QKVEKVLKSDVFINESKNVARFLM 97


>tr|B3T257|B3T257_9ZZZZ Putative histidine kinase-, DNA gyrase B-,
and HSP90-like ATPase OS=uncultured marine microorganism
HF4000_137B17 GN=ALOHA_HF4000137B17ctg1g3 PE=4 SV=1
Length = 334

Score = 34.7 bits (78), Expect = 2.7
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = -1

Query: 425 AFLAQYTSIEVPDEVWHEILGYTQKVNQGVDDFVMQFTRLWDKWARALGNEIPPSMLKKD 246
AFL + SI + D+ + Y K N G+ +FV DK AL N+ ++ KK
Sbjct: 203 AFLNKGLSIILVDKTAKKEKEYKNKHNGGIQEFV----EFLDKNKTALVNKNDVNLFKKP 258

Query: 245 RFVANLKESLKFKIELKRPATFEE 174
+++ LK+++ + LK A + E
Sbjct: 259 IYISGLKDNVMVECSLKWNAGYSE 282


>tr|A1B7L2|A1B7L2_PARDP Transcriptional regulator, GntR family
OS=Paracoccus denitrificans (strain Pd 1222)
GN=Pden_3435 PE=4 SV=1
Length = 211

Score = 34.7 bits (78), Expect = 2.7
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Frame = -1

Query: 488 GYTIMKSWYMHKLQDYNRVKQ----AFLAQYTSIEVPDE---VWHEILGYTQKVNQGVDD 330
G I++S + +L + +++Q A A+ + DE VW E+L Y + + G D+
Sbjct: 64 GALIVRSVTVEQLLEIVQLRQVLERAAAARAAERGITDELRQVWDEMLPYAEGRSVGFDE 123

Query: 329 FVMQFTRLWDKWARALGNEIPPSMLKKDRFVA 234
F R ARA G E+ P++L + R VA
Sbjct: 124 FWQVDERFHAAVARAAGLELLPAILAEQRAVA 155


>tr|Q7XSX7|Q7XSX7_ORYSJ OSJNBb0056F09.19 protein OS=Oryza sativa
subsp. japonica GN=OSJNBb0056F09.19 PE=4 SV=2
Length = 234

Score = 34.7 bits (78), Expect = 2.7
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -1

Query: 287 ALGNEIPPSMLKKDR---FVANLKESLKFKIELKRPATFEEAVTIAKEKEWKA 138
AL + IP + + + F+A L++ + +EL++P ++A+ + + EWKA
Sbjct: 124 ALTSRIPDPLTESQQVQLFIAGLQDDISIDVELQKPDDLQDAMRLPRAYEWKA 176


>tr|Q0JEH4|Q0JEH4_ORYSJ Os04g0273100 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os04g0273100 PE=4 SV=1
Length = 211

Score = 34.7 bits (78), Expect = 2.7
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -1

Query: 287 ALGNEIPPSMLKKDR---FVANLKESLKFKIELKRPATFEEAVTIAKEKEWKA 138
AL + IP + + + F+A L++ + +EL++P ++A+ + + EWKA
Sbjct: 101 ALTSRIPDPLTESQQVQLFIAGLQDDISIDVELQKPDDLQDAMRLPRAYEWKA 153


>tr|A3ARU3|A3ARU3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_013515 PE=4 SV=1
Length = 234

Score = 34.7 bits (78), Expect = 2.7
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -1

Query: 287 ALGNEIPPSMLKKDR---FVANLKESLKFKIELKRPATFEEAVTIAKEKEWKA 138
AL + IP + + + F+A L++ + +EL++P ++A+ + + EWKA
Sbjct: 124 ALTSRIPDPLTESQQVQLFIAGLQDDISIDVELQKPDDLQDAMRLPRAYEWKA 176