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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921008
Clone id YMU001_000144_E02
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATCGTGTCGGCCATATTGTCTCATTTGTAGCGAACTCATGCACACAAAAAAGACTGCGT
CTGATGTCAATGACAAAACTTTGTACACCAAAGCGCTTTGGTGGTCTGAATATTTTGGAC
CTGCGTAGGCATGTCCTGGCTAGGAAGGCTATGCTATTGCCTACACTTACGCAAGAATTT
CAGCCTTGGACTCTAATGTGTGCGCACTTGAGCCAGCATGTGGTTACGTCCTCCTTTGGT
CATTGGCAACCATCTATTTGGAAGGTGGTATTTGGTAAGATGGATGGCCATATTCCTGGA
TGCCCGCTTGCTTCCACCTTGCTCTCTGCCTGGAAACAGGTTAAGAATCATCTATCGTGG
AATGCTCGAACGCAAGAAAACTCCCTTCGCTTGGAGAAACTTCATTGTAGCCGGGCCTTT
TCTCTTACCTTGGTTGACCGCTCGCCTCGTGAAGCGTATTTCCTCTCCTGCCGGAGT
■■Homology search results ■■ -
sp_hit_id Q9LU90
Definition sp|Q9LU90|FB188_ARATH F-box protein At3g26010 OS=Arabidopsis thaliana
Align length 52
Score (bit) 30.8
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921008|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_E02.
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LU90|FB188_ARATH F-box protein At3g26010 OS=Arabidopsis tha...    31   3.3  
sp|A7MMH2|Y1554_ENTS8 UPF0259 membrane protein ESA_01554 OS=Ente...    30   4.2  
sp|O23735|CYSK2_BRAJU Cysteine synthase OS=Brassica juncea PE=2 ...    30   4.3  
sp|P58366|ANKH_RAT Progressive ankylosis protein homolog OS=Ratt...    30   4.3  
sp|Q9JHZ2|ANKH_MOUSE Progressive ankylosis protein OS=Mus muscul...    30   4.3  
sp|Q9HCJ1|ANKH_HUMAN Progressive ankylosis protein homolog OS=Ho...    30   4.3  
sp|Q9W7R4|TEN3_DANRE Teneurin-3 OS=Danio rerio GN=odz3 PE=2 SV=1       30   5.6  
sp|A6V4P3|TAM_PSEA7 Trans-aconitate 2-methyltransferase OS=Pseud...    30   5.6  
sp|Q8JJX1|POLN_SPDV Non-structural polyprotein OS=Salmon pancrea...    30   5.6  
sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2 ...    30   5.6  
sp|P47998|CYSK1_ARATH Cysteine synthase OS=Arabidopsis thaliana ...    30   5.6  
sp|P58367|ANKH_XENLA Progressive ankylosis protein homolog OS=Xe...    30   5.6  
sp|P26280|RCEL_ROSDO Reaction center protein L chain OS=Roseobac...    30   7.2  
sp|Q9PJK8|LNT_CHLMU Apolipoprotein N-acyltransferase OS=Chlamydi...    30   7.2  

>sp|Q9LU90|FB188_ARATH F-box protein At3g26010 OS=Arabidopsis
           thaliana GN=At3g26010 PE=2 SV=1
          Length = 414

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 244 WQPSIWKVVFGKMDG-HIPGC--PLASTLLSAWKQVKNHL-SWNARTQENSL 387
           WQ  +WK+    + G ++P    P  S ++  W Q   H+ SWN RTQ+N +
Sbjct: 284 WQ-LLWKIGLPSLIGDYVPMAMHPFDSDIVHLWSQDHRHVVSWNLRTQKNRI 334


>sp|A7MMH2|Y1554_ENTS8 UPF0259 membrane protein ESA_01554
           OS=Enterobacter sakazakii (strain ATCC BAA-894)
           GN=ESA_01554 PE=3 SV=1
          Length = 247

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 350 IYRGMLERKKTPFAWRNFIVAGPFLLPWLTARLVKRISSPA 472
           I+R M  R     AWRN  +  P +L WL AR    + +PA
Sbjct: 172 IFRAM--RNSMRLAWRNMRLVAPAVLLWLLARAALLLFAPA 210


>sp|O23735|CYSK2_BRAJU Cysteine synthase OS=Brassica juncea PE=2
           SV=1
          Length = 324

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 250 PSIWKVVFGKMDGHIPGCPLASTLLSAWKQVK 345
           P IWK   GK+DG I G     T+  A K +K
Sbjct: 165 PEIWKGTEGKIDGFISGIGTGGTITGAGKYLK 196


>sp|P58366|ANKH_RAT Progressive ankylosis protein homolog OS=Rattus
           norvegicus GN=Ankh PE=2 SV=1
          Length = 492

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 348 ILNLFPGREQGGSKRASRNMAIHLTKY---HLPNRWL 247
           I+NLF  R+ GGS  A+  +AI    Y   H+P  WL
Sbjct: 257 IVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWL 293


>sp|Q9JHZ2|ANKH_MOUSE Progressive ankylosis protein OS=Mus musculus
           GN=Ankh PE=2 SV=1
          Length = 492

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 348 ILNLFPGREQGGSKRASRNMAIHLTKY---HLPNRWL 247
           I+NLF  R+ GGS  A+  +AI    Y   H+P  WL
Sbjct: 257 IVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWL 293


>sp|Q9HCJ1|ANKH_HUMAN Progressive ankylosis protein homolog OS=Homo
           sapiens GN=ANKH PE=1 SV=2
          Length = 492

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 348 ILNLFPGREQGGSKRASRNMAIHLTKY---HLPNRWL 247
           I+NLF  R+ GGS  A+  +AI    Y   H+P  WL
Sbjct: 257 IVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWL 293


>sp|Q9W7R4|TEN3_DANRE Teneurin-3 OS=Danio rerio GN=odz3 PE=2 SV=1
          Length = 2590

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 106  LNILDLRRHVLARKAMLLPTLTQEFQPWTLMCAHLSQHVVTSSFGHWQPS 255
            LN++ L       + +L  T+TQ   P+ LM  HL   VV   F  W P+
Sbjct: 892  LNLMYLSSRAAGYRPVLKVTMTQATIPFNLMKVHLMVAVVGRLFQKWFPA 941


>sp|A6V4P3|TAM_PSEA7 Trans-aconitate 2-methyltransferase
           OS=Pseudomonas aeruginosa (strain PA7) GN=tam PE=3 SV=1
          Length = 275

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 130 HVLARKAMLLPTLTQEFQPWTLMCAHLSQHVVTSSFGHWQPSIW-KVVFGKMDGHIP-GC 303
           H + R   LLP L  +  P   + AH+          +W+ + W +++   +D   P G 
Sbjct: 116 HFIERHCSLLPRLLGQLSPGGCLAAHMP---------NWRDASWYRLMLDALDSAGPGGT 166

Query: 304 PLASTLLSAWKQVKNHLS 357
           PL S  L    Q +N LS
Sbjct: 167 PLGSPTLRYLMQQRNVLS 184


>sp|Q8JJX1|POLN_SPDV Non-structural polyprotein OS=Salmon pancreas
           disease virus PE=2 SV=1
          Length = 2601

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 336 FPGREQGGSKRASRNMAIHLTKYHLPNRWLPMTKGGRNHMLAQV 205
           FPG E   S R+S + A      HL  +W+    GGR  ++A +
Sbjct: 33  FPGFEVVASNRSSNDHAAARAFSHLATKWIERDIGGRQVIVADI 76


>sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2
           SV=1
          Length = 322

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 250 PSIWKVVFGKMDGHIPGCPLASTLLSAWKQVK 345
           P IWK   GK+DG + G     T+  A K +K
Sbjct: 163 PEIWKGTDGKIDGFVSGIGTGGTITGAGKYLK 194
tr_hit_id A3A2V5
Definition tr|A3A2V5|A3A2V5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 126
Score (bit) 37.4
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921008|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_E02.
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3A2V5|A3A2V5_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.37 
tr|A3C0H7|A3C0H7_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.83 
tr|B6GCK4|B6GCK4_9ACTN Putative uncharacterized protein OS=Colli...    36   1.1  
tr|B2VWE6|B2VWE6_PYRTR Predicted protein OS=Pyrenophora tritici-...    35   1.9  
tr|B4VCD7|B4VCD7_9ACTO Putative uncharacterized protein OS=Strep...    35   2.4  
tr|Q0E467|Q0E467_ORYSJ Os02g0133700 protein OS=Oryza sativa subs...    35   2.4  
tr|Q75J38|Q75J38_ORYSJ Putative uncharacterized protein OSJNBa00...    34   3.2  
tr|Q15ZW6|Q15ZW6_PSEA6 Putative uncharacterized protein OS=Pseud...    34   4.2  
tr|Q04DW3|Q04DW3_OENOB Glycosyltransferase OS=Oenococcus oeni (s...    33   5.4  
tr|B6W5U5|B6W5U5_9BACE Putative uncharacterized protein OS=Bacte...    33   5.4  
tr|A3A6Q7|A3A6Q7_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|A5BRP5|A5BRP5_VITVI Putative uncharacterized protein OS=Vitis...    33   9.2  
tr|A3CGV1|A3CGV1_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.2  
tr|Q1GDY6|Q1GDY6_SILST Glycosyl transferase WecB/TagA/CpsF famil...    33   9.2  
tr|B5XU67|B5XU67_KLEP3 Putative membrane protein OS=Klebsiella p...    33   9.2  
tr|A6TE04|A6TE04_KLEP7 Putative integral membrane protein OS=Kle...    33   9.2  
tr|Q0ZBA1|Q0ZBA1_KLEPN YghB (Fragment) OS=Klebsiella pneumoniae ...    33   9.2  

>tr|A3A2V5|A3A2V5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005127 PE=4 SV=1
          Length = 1499

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
 Frame = +1

Query: 64  MSMTKLCTPKRFGGLNILDLRRHVLARKA----MLLPTLTQEFQPWTLMCAHLSQHVVTS 231
           ++ TK+C+PK +GGL + +L+   +A ++    M   +LT+ +Q   + C+    H+V +
Sbjct: 171 VAWTKVCSPKDYGGLGVPNLKLMGIALRSRWTWMQRTSLTKPWQGLEIPCSQKELHLVAA 230

Query: 232 S----FGHWQPSI-WKVVFGKMDGHIPGCPLASTLLSAWKQVKNHLSWNARTQENSLRLE 396
           S     G+ Q  + W+      D  + G  + +  LS +  V   +      ++  +RL 
Sbjct: 231 STVCQLGNGQTILFWE------DNWLQGGTIRAIALSIYDHVSTRIRKRRTVEKKVVRLR 284

Query: 397 KLHCSR 414
           +   S+
Sbjct: 285 RTVASK 290


>tr|A3C0H7|A3C0H7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028799 PE=3 SV=1
          Length = 565

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
 Frame = +1

Query: 1   DRVGHIVSFVANSCTQKRLRLMSMTKLCTPKRFGGLNILDLRRHVLA-RKAMLLPTLTQE 177
           D++ H   +   +     +  ++  ++C+PK +GGL I DL R  +A R   L    T  
Sbjct: 350 DKIRHSFLWAGKAYANGGVCRVAWARVCSPKEYGGLGIPDLERLGIALRSRWLWQQRTSP 409

Query: 178 FQPW---TLMCAHLSQHVVTSSFGHWQPSIWKVVFGKMDGHI 294
            +PW   +++ +   +++V+ S G     +   V+  +  H+
Sbjct: 410 EKPWQGLSILVSQKERNLVSISMGSSIRLLAPAVYAAIPAHL 451


>tr|B6GCK4|B6GCK4_9ACTN Putative uncharacterized protein
           OS=Collinsella stercoris DSM 13279 GN=COLSTE_01827 PE=4
           SV=1
          Length = 321

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
 Frame = +1

Query: 22  SFVANSCTQKRLRLMSMTKLCTPKRFGGLNILDLRRHVLARKAMLLPTLTQEFQPWTLMC 201
           + VA S    R+    + KL +      + + D+ RHV+          T E +PW  + 
Sbjct: 158 ALVARSGENTRMLDNELKKLASMVEGPEITLADVERHVMR---------TAEVKPWEFLN 208

Query: 202 AHLSQHVVTS-SFGHWQPS-----IWK---------VVFGKMDGHIPGCPLASTL-LSAW 333
           A  ++ +  S      QP+     +W          ++   +D    G  LASTL + +W
Sbjct: 209 AVAARDLARSLELLALQPAKSEVRLWSLLVTRLRELIIAKSLDARGQGSQLASTLGVQSW 268

Query: 334 KQVKNHLSWNARTQENSL 387
            QVKNHL W  R + + L
Sbjct: 269 -QVKNHLGWARRWRMDEL 285


>tr|B2VWE6|B2VWE6_PYRTR Predicted protein OS=Pyrenophora
           tritici-repentis (strain Pt-1C-BFP) GN=PTRG_01508 PE=4
           SV=1
          Length = 599

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = +1

Query: 157 LPTLTQEFQPWTLMCAHLSQHVVTSSFGHWQPSIWKVVFGKMDGHIPGCPLASTLLSAWK 336
           L TL + +     +  ++       S   WQP  W+   G+  G+ P       +  AW 
Sbjct: 68  LTTLCRNWDRKGFVARYIDPTEKIMSMNTWQPERWRGPQGQTMGYQPRIDSYEEIYGAWG 127

Query: 337 QVKNHLSWNA------RTQENSLRLEKL 402
           + +  L+W+A      RT+E    +EK+
Sbjct: 128 ERREVLAWSAGTQILLRTKETGANIEKI 155


>tr|B4VCD7|B4VCD7_9ACTO Putative uncharacterized protein
           OS=Streptomyces sp. Mg1 GN=SSAG_05556 PE=4 SV=1
          Length = 311

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 187 WTLMCAHLSQHVVTSSFGHWQPSIWKVVFGKMDGHIPGCPLASTLLSAWKQVKNHLSWNA 366
           W  +   L    VT++   W  ++W+V FG+    I G   A  L++AW   +  L W A
Sbjct: 104 WETVRVALCAAAVTAAHAWWVTALWEVPFGRAAAWIAGTG-ALPLVAAWHARRRSLGWGA 162


>tr|Q0E467|Q0E467_ORYSJ Os02g0133700 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0133700 PE=4 SV=1
          Length = 343

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +1

Query: 64  MSMTKLCTPKRFGGLNILDLRRHVLARKA----MLLPTLTQEFQPWTLMCAHLSQHVVTS 231
           ++ TK+C+PK +GGL + +L+   +A ++    M   +LT+ +Q   + C+    H+V +
Sbjct: 171 VAWTKVCSPKDYGGLGVPNLKLMGIALRSRWTWMQRTSLTKPWQGLEIPCSQKELHLVAA 230

Query: 232 S 234
           S
Sbjct: 231 S 231


>tr|Q75J38|Q75J38_ORYSJ Putative uncharacterized protein
           OSJNBa0066H15.12 (Retrotransposon protein, putative,
           LINE subclass) OS=Oryza sativa subsp. japonica
           GN=OSJNBa0066H15.12 PE=4 SV=1
          Length = 343

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
 Frame = +1

Query: 1   DRVGHIVSFVANSCTQKRLRLMSMTKLCTPKRFGGLNILDLRRHVLA-RKAMLLPTLTQE 177
           D++     +   + T   +  ++  ++C+PK +GGL I DL R  +A R   L    T  
Sbjct: 166 DKIRRSFLWAGKASTNGGVCRVAWARVCSPKEYGGLGIPDLERLGIALRSRWLWQQRTSP 225

Query: 178 FQPWTLMCAHLSQ---HVVTSSFGHWQPSIWKVVFGKMDGHI 294
            +PW  +   +SQ   ++V+ S G    S+   V+  +   +
Sbjct: 226 EKPWQGLSIPVSQKERNLVSISMGSSIRSLAPAVYAAVPARL 267


>tr|Q15ZW6|Q15ZW6_PSEA6 Putative uncharacterized protein
           OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
           GN=Patl_0040 PE=3 SV=1
          Length = 589

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -2

Query: 194 RVQG*NSCVSVGNSIAFLARTCLRRSKIFRPPKRFGVQSFVIDIRRSLFCVHEFATNETI 15
           RVQ  +  V   ++I       L  S+ F P KR    SF   ++ SL+   E A N+++
Sbjct: 177 RVQPKSVLVGFDDTIKKFITEDLHDSQFFAPFKRLAESSFSSAVQASLYTQGETAINQSV 236

Query: 14  WP 9
           WP
Sbjct: 237 WP 238


>tr|Q04DW3|Q04DW3_OENOB Glycosyltransferase OS=Oenococcus oeni
           (strain BAA-331 / PSU-1) GN=OEOE_1500 PE=4 SV=1
          Length = 337

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/68 (33%), Positives = 30/68 (44%)
 Frame = +1

Query: 259 WKVVFGKMDGHIPGCPLASTLLSAWKQVKNHLSWNARTQENSLRLEKLHCSRAFSLTLVD 438
           W+V  G  D HIP   L ST  + W +V N LS N + +  S     +   R F L   +
Sbjct: 211 WQVFIGFYDMHIPISFLKSTFDNVWSEVGNLLSQNYQHRFRSQLDYSVWLMRYFQLASGN 270

Query: 439 RSPREAYF 462
             PR   F
Sbjct: 271 FFPRRTRF 278


>tr|B6W5U5|B6W5U5_9BACE Putative uncharacterized protein
           OS=Bacteroides dorei DSM 17855 GN=BACDOR_04957 PE=4 SV=1
          Length = 478

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +1

Query: 160 PTLTQEFQPWTLMCAHLSQHVVTSSFGHWQPSIWKVVFGK 279
           PTLT +F+P   M +  S+ VVT+ F H   +I+ V+ GK
Sbjct: 198 PTLTFDFKPLKGMLSFSSKLVVTNIFNHINNNIFTVILGK 237