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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921009
Clone id YMU001_000144_E03
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTGCCTATATTTTGCAGACTGTCATTATGGCCTTGCTACACGTTATCCAACCAACAAGA
GGAAGATCCAGAGGGTCAATAGAATAACTGTAAGGTGCAGTTCTATGAATATAGCGAACG
AGGTTTCCATTAAAGCTTGTATACGCATGACAGCCAATCCTGGTGTGAAGTGCTACCGAT
TGAGAGTTACATCCTTACAAAATACAGGAGTTATCTCTGATCAGGAAGTGTTTGAATCTG
TGACAGAGAGGAGAAGTTTCTCTTGTTTAGACCCAGATGATTGCAAGGTAACCTCAGGAA
TCACCTTTGCTCCCAAGTCTTCAAAGCCTTGTGGATTGTTTTGGAATTAAGAGCTGCATC
GACAAGACACTCATGGACTTGTCTGAAAGAGTCGCAGAATTGTGCTGCATCCTTAGGACT
TAACTTCTTTTGAACCGCTTCTCGAAGACGAGGCCAAAACACATCGCCATTGCCGAGATT
CCCATCTAGTGTCAATGAGTCGTGTAGCTGAT
■■Homology search results ■■ -
sp_hit_id Q8K0D2
Definition sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus musculus
Align length 46
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921009|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_E03.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus muscul...    32   1.7  
sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis GN=rnr P...    32   2.2  
sp|Q7MWI5|GCH1_PORGI GTP cyclohydrolase 1 OS=Porphyromonas gingi...    31   3.8  
sp|Q6L711|HABP2_RAT Hyaluronan-binding protein 2 OS=Rattus norve...    30   8.5  

>sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus musculus
           GN=Habp2 PE=1 SV=2
          Length = 558

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 258 FSCLDPDDCKVTSGITFAPKSSK-----PCGLFWN*ELHRQDTHGL 380
           F  + PDDC V  G ++  K SK     PC L+WN  L  Q+T+ +
Sbjct: 184 FCEIGPDDCYVGDGYSYRGKVSKTVNQNPC-LYWNSHLLLQETYNM 228


>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis GN=rnr PE=3
           SV=1
          Length = 779

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 222 QEVFESVTERRSFSCLDPDDCKVTSGITFAPKSSK 326
           Q V  + TE R+F  + PDD K+TS I F PK+ K
Sbjct: 138 QRVVGTYTETRNFGFVIPDDKKITSDI-FIPKNGK 171


>sp|Q7MWI5|GCH1_PORGI GTP cyclohydrolase 1 OS=Porphyromonas
           gingivalis GN=folE PE=3 SV=1
          Length = 193

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
 Frame = +3

Query: 9   YFADCHYG-LATRYPTNKRKIQRVNRITVRCSSMNIANEVSIKACIRMTANP-GV----- 167
           +F   H G +  RY T   K+ RV  +  R   +       IK CI+ T NP GV     
Sbjct: 90  FFGKAHVGYIPNRYITGLSKLPRVVDVFARRLQVQERLTTQIKECIQNTLNPLGVIVVIE 149

Query: 168 ---KCYRLRVTSLQN--TGVISDQEVFESVTERRSF 260
               C ++R    QN  T        FE  T R  F
Sbjct: 150 AQHMCMQMRGVEKQNSLTTTSDFTGAFEESTTREEF 185


>sp|Q6L711|HABP2_RAT Hyaluronan-binding protein 2 OS=Rattus
           norvegicus GN=Habp2 PE=2 SV=1
          Length = 558

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 17/83 (20%)
 Frame = +3

Query: 183 RVTSLQNTGVISDQEVFESVTERRSFSC------------LDPDDCKVTSGITFAPKSSK 326
           R    QN GV S          R  FSC            + PDDC V  G ++  K S+
Sbjct: 153 RPNPCQNGGVCSRHR------RRSRFSCACPDQYKGRFCEIGPDDCYVGDGYSYRGKVSR 206

Query: 327 -----PCGLFWN*ELHRQDTHGL 380
                PC L+WN  L  Q+ + +
Sbjct: 207 TVNQNPC-LYWNSHLLLQENYNM 228
tr_hit_id Q0ZHF0
Definition tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solanum chacoense
Align length 54
Score (bit) 53.1
E-value 8.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921009|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_E03.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solan...    53   8e-06
tr|A9TNP5|A9TNP5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.013
tr|B6U6D8|B6U6D8_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.018
tr|A9P238|A9P238_PICSI Putative uncharacterized protein OS=Picea...    42   0.018
tr|B6TR62|B6TR62_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.067
tr|B6SN90|B6SN90_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.067
tr|B6TLG0|B6TLG0_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.25 
tr|B6SGK5|B6SGK5_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.25 
tr|A7PFW0|A7PFW0_VITVI Chromosome chr6 scaffold_15, whole genome...    38   0.25 
tr|Q6NQD2|Q6NQD2_ARATH At5g12240 (MRNA, , clone: RAFL22-05-F16) ...    37   0.74 
tr|B4FGW9|B4FGW9_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.96 
tr|Q8GRJ4|Q8GRJ4_ORYSJ Putative uncharacterized protein P0524G08...    36   1.3  
tr|B8B538|B8B538_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|Q0D477|Q0D477_ORYSJ Os07g0641800 protein OS=Oryza sativa subs...    35   1.6  
tr|Q9FMN9|Q9FMN9_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9 ...    35   2.1  
tr|A9U0C4|A9U0C4_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.8  
tr|Q7WE70|Q7WE70_BORBR Putative racemase OS=Bordetella bronchise...    33   8.1  

>tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solanum
           chacoense PE=4 SV=1
          Length = 114

 Score = 53.1 bits (126), Expect = 8e-06
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = -3

Query: 477 LGNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKT 316
           LG+G+ FW +L+ A +KK++P +A +FC +FRQV+  LVD  L+ +     L +
Sbjct: 61  LGHGEAFWGKLKAAAEKKMNPAEAEEFCKTFRQVYRKLVDEELSLEAARSLLSS 114


>tr|A9TNP5|A9TNP5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171085 PE=4 SV=1
          Length = 162

 Score = 42.4 bits (98), Expect = 0.013
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -3

Query: 459 FWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTW 313
           FW +L+ A +++L P+ A +FCD+FR  H  +V+  L+   I +  K W
Sbjct: 110 FWDQLKAAAEQQLLPEAAQKFCDAFRARHNEMVNNTLSLDGIERIAKHW 158


>tr|B6U6D8|B6U6D8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score = 42.0 bits (97), Expect = 0.018
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -3

Query: 474 GNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWEQR 304
           G  D+F  +L+ A + K+    A  FC +F +VHE LV   LN     K L  +E R
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYESR 108


>tr|A9P238|A9P238_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 121

 Score = 42.0 bits (97), Expect = 0.018
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = -3

Query: 465 DVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHK 328
           D FW  LR +V +K+  ++A QFC  F++VHE LV  AL    I +
Sbjct: 65  DPFWLHLRSSVAEKMGAENAEQFCKEFQKVHEQLVYKALPLDAIRR 110


>tr|B6TR62|B6TR62_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 40.0 bits (92), Expect = 0.067
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 474 GNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 310
           G  D+F  +L+ A + K+    A  FC +F +VHE LV   LN     K L  +E
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYE 106


>tr|B6SN90|B6SN90_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 40.0 bits (92), Expect = 0.067
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -3

Query: 474 GNGDVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 310
           G  D+F  +L+ A + K+    A  FC +F +VHE LV   LN     K L  +E
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYE 106


>tr|B6TLG0|B6TLG0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 106

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 465 DVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 310
           D+F  +L+ A +KK+    A  FC +F + HE LV   LN     K L  +E
Sbjct: 54  DLFMQKLKMAAEKKIGTTKAEFFCKAFEETHEKLVYKELNLDAAKKFLSAYE 105


>tr|B6SGK5|B6SGK5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 106

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 465 DVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 310
           D+F  +L+ A +KK+    A  FC +F + HE LV   LN     K L  +E
Sbjct: 54  DLFMQKLKMAAEKKIGTTKAEFFCKAFEETHEKLVYKELNLDAAKKFLSAYE 105


>tr|A7PFW0|A7PFW0_VITVI Chromosome chr6 scaffold_15, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017272001
           PE=4 SV=1
          Length = 81

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -3

Query: 459 FWPRLREAVQKKLSPKDAAQFCDSFRQVHECLV 361
           FW +L+   ++K+ P +A +FC +F+QVH  LV
Sbjct: 27  FWEKLKVVAERKVGPVEAERFCKAFQQVHRKLV 59


>tr|Q6NQD2|Q6NQD2_ARATH At5g12240 (MRNA, , clone: RAFL22-05-F16)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 114

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -3

Query: 465 DVFWPRLREAVQKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKAL 322
           D FW  L+ A +KK+   +A +FC +F ++H+ LV   L+ +   + L
Sbjct: 64  DKFWENLKAAAEKKVGGVEAERFCKAFEKLHKKLVYEELDPEAAKRYL 111