BP921010
Clone id YMU001_000144_E04
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTTCGACATAAAATGGTTGATGGCATGTGTTCCTTTATACTATGAGGTGGAGACCACCTT
AAACTGTATCCGAATACTTTTCTGCTTGGATAAGCTCTGTAAGTGAGCTTTGACATAGTA
TGGATGGACAATCGCATCCAAAGAGACATCAATTGGGACATGGCCCTTTAATGACATTTC
TGACACCATGGATGTGCCAATCAACTCATTTCATCGTAGTGTATTGTGCGTAAATAAAGT
AACAAATCACGAGAAGATGTCATGTGCTTGGTAGCAATGTTGTCAATGATCCAGTCACCC
TCCGAGACCAGAGGAATCTGAACCTGGGAACCATTCCTTCTAGATCCACAGCACTCTGAT
CCTGAGAATCCTGCACAATGGGCACCGTCGCTGAAGAAGAATCTTAGGGTATCATCTCCG
ATAGACAAAGGCTAACGATTTTGCTGTCGTCAAATCTTCTCCTGTGCAAGTAGGACATTT
GCTCCAGTAATGACCCTTATCCCACAATGATAGCAATGTCTATGTG
■■Homology search results ■■ -
sp_hit_id Q3JCS9
Definition sp|Q3JCS9|ISPD_NITOC 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Align length 48
Score (bit) 30.8
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921010|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_E04.
(526 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3JCS9|ISPD_NITOC 2-C-methyl-D-erythritol 4-phosphate cytidyl... 31 4.1
sp|Q9EP75|CP4FE_MOUSE Cytochrome P450 4F14 OS=Mus musculus GN=Cy... 30 5.4
sp|P33274|CP4F1_RAT Cytochrome P450 4F1 OS=Rattus norvegicus GN=... 30 9.2

>sp|Q3JCS9|ISPD_NITOC 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=ispD PE=3 SV=1
Length = 234

Score = 30.8 bits (68), Expect = 4.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3

Query: 362 GSECCGSRRNGSQVQIPLVSEGDWIIDNIATKHMTSSRDLLLYLRTIH 219
G+E C S RNG + + L + DW++ + A + D+ + T+H
Sbjct: 79 GAERCHSVRNGLESLMALAAPEDWVLVHDAARPCLRKEDIDRLIETLH 126


>sp|Q9EP75|CP4FE_MOUSE Cytochrome P450 4F14 OS=Mus musculus
GN=Cyp4f14 PE=2 SV=1
Length = 524

Score = 30.4 bits (67), Expect = 5.4
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +1

Query: 259 VMCLVAMLSMIQSPSETRGI*TWEPFLLDPQHSDPENPAQWAPSLKKNLRVSSPIDKG*R 438
++CL+++ + +PS ++PF DP++ +P + P G R
Sbjct: 418 IICLISIFGIHHNPSVWPDPEVYDPFRFDPENIKDSSPLAFI-----------PFSAGPR 466

Query: 439 FCCRQIFSCASRTFAPVMTLI 501
C Q F+ + A +TL+
Sbjct: 467 NCIGQTFAMSEMKVALALTLL 487


>sp|P33274|CP4F1_RAT Cytochrome P450 4F1 OS=Rattus norvegicus
GN=Cyp4f1 PE=2 SV=1
Length = 524

Score = 29.6 bits (65), Expect = 9.2
Identities = 18/81 (22%), Positives = 34/81 (41%)
Frame = +1

Query: 259 VMCLVAMLSMIQSPSETRGI*TWEPFLLDPQHSDPENPAQWAPSLKKNLRVSSPIDKG*R 438
++CL+++ + +PS + PF DP++ +P + P G R
Sbjct: 418 IICLISIFGIHHNPSVWPDPEVYNPFRFDPENIKDSSPLAFI-----------PFSAGPR 466

Query: 439 FCCRQIFSCASRTFAPVMTLI 501
C Q F+ + A +TL+
Sbjct: 467 NCIGQTFAMSEMKVALALTLL 487


tr_hit_id O23588
Definition tr|O23588|O23588_ARATH Retrotransposon like protein OS=Arabidopsis thaliana
Align length 33
Score (bit) 35.0
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921010|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_E04.
(526 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|O23588|O23588_ARATH Retrotransposon like protein OS=Arabidops... 35 2.3
tr|A8P2T6|A8P2T6_COPC7 Putative uncharacterized protein OS=Copri... 35 2.3
tr|B0EJH9|B0EJH9_ENTDI Putative uncharacterized protein OS=Entam... 33 6.7
tr|Q7PYN3|Q7PYN3_ANOGA AGAP002030-PA (Fragment) OS=Anopheles gam... 33 8.6

>tr|O23588|O23588_ARATH Retrotransposon like protein OS=Arabidopsis
thaliana GN=dl4760c PE=2 SV=1
Length = 1433

Score = 35.0 bits (79), Expect = 2.3
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3

Query: 320 QIPLVSEGDWIIDNIATKHMTSSRDLLLYLRTI 222
Q P VS W+ID+ AT H+T +RDL L R++
Sbjct: 423 QEPAVSPRGWVIDSGATHHVTHNRDLYLNFRSL 455


>tr|A8P2T6|A8P2T6_COPC7 Putative uncharacterized protein
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
9003) GN=CC1G_12490 PE=4 SV=1
Length = 772

Score = 35.0 bits (79), Expect = 2.3
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -3

Query: 134 RLSIHTMSKLTYRAYPSRKVFGYSLRWSPPHSIKEHMPSTIL 9
+L I M +L Y+ P+ K+FG L P SIKEH+ STI+
Sbjct: 114 QLLIFPMGRLWYKVVPNVKIFGKELN-PGPFSIKEHVLSTIM 154


>tr|B0EJH9|B0EJH9_ENTDI Putative uncharacterized protein
OS=Entamoeba dispar SAW760 GN=EDI_165630 PE=4 SV=1
Length = 639

Score = 33.5 bits (75), Expect = 6.7
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = -2

Query: 228 HNTLR*NELIGTS------MVSEMSLKGHVPIDVSLDAIVHPYYVKAHLQSLSKQKSIRI 67
H +++ N LIGT+ VS L+ PI V H Y+K L+ L K I
Sbjct: 428 HTSMQVNVLIGTNHIWPLTFVSVPPLEALKPIIVMFVGFYHKKYIKRMLRFLHKSSIYNI 487

Query: 66 QFKVVSTS*YKGTHAINH 13
QF + G H +NH
Sbjct: 488 QFNGCN-----GIHTLNH 500


>tr|Q7PYN3|Q7PYN3_ANOGA AGAP002030-PA (Fragment) OS=Anopheles gambiae
GN=AGAP002030 PE=4 SV=4
Length = 2210

Score = 33.1 bits (74), Expect = 8.6
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -3

Query: 392 SDGAHCAGFSGSECCGSRRNGSQVQIPLVSEGDWIID 282
+ A AG SGS +RR GS+ LV EGDW +D
Sbjct: 1314 TSSAGAAGPSGSGVSNNRRTGSRRSRRLVPEGDWRVD 1350