| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921013|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_E07.
(374 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=X... 32 0.98
sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xen... 32 1.3
sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=X... 32 1.3
sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fra... 32 1.3
sp|Q3KJ31|MSBA_PSEPF Lipid A export ATP-binding/permease protein... 30 4.9
sp|Q9HUG8|MSBA_PSEAE Lipid A export ATP-binding/permease protein... 30 4.9
sp|Q52KN7|CPE1B_XENLA Cytoplasmic polyadenylation element-bindin... 30 4.9
sp|Q91572|CPE1A_XENLA Cytoplasmic polyadenylation element-bindin... 30 4.9
sp|Q4KJB2|MSBA_PSEF5 Lipid A export ATP-binding/permease protein... 29 6.3
sp|Q4R8E6|CB053_MACFA Uncharacterized protein C2orf53 homolog OS... 29 6.3
sp|Q9Y7S5|YQO6_SCHPO Uncharacterized membrane protein C569.06 OS... 29 8.3
sp|P0C279|CPEB1_RAT Cytoplasmic polyadenylation element-binding ... 29 8.3
sp|Q5R733|CPEB1_PONAB Cytoplasmic polyadenylation element-bindin... 29 8.3
sp|P70166|CPEB1_MOUSE Cytoplasmic polyadenylation element-bindin... 29 8.3
sp|Q9BZB8|CPEB1_HUMAN Cytoplasmic polyadenylation element-bindin... 29 8.3
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C
OS=Xenopus laevis GN=rnf111-C PE=2 SV=1
Length = 967
Score = 32.0 bits (71), Expect = 0.98
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 237 SCCP---PCGFSKLNSSFPHLLSSCLFQYSSHHP 329
SCCP PCG S N H SSC +S H P
Sbjct: 454 SCCPQHSPCGGSSQNHVLGHPHSSCFQPHSHHFP 487
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia
OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1
Length = 954
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 237 SCCP---PCGFSKLNSSFPHLLSSCLFQYSSHHP 329
SCCP PCG S N H SSC +S H P
Sbjct: 454 SCCPQHSPCGGSSQNHVLGHPHSSCFPPHSHHFP 487
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B
OS=Xenopus laevis GN=rnf111-B PE=2 SV=1
Length = 959
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 237 SCCP---PCGFSKLNSSFPHLLSSCLFQYSSHHP 329
SCCP PCG S N H SSC +S H P
Sbjct: 444 SCCPQHSPCGGSSQNHVLGHPHSSCFPPHSHHFP 477
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A
(Fragment) OS=Xenopus laevis GN=rnf111-A PE=2 SV=1
Length = 923
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 237 SCCP---PCGFSKLNSSFPHLLSSCLFQYSSHHP 329
SCCP PCG S N H SSC +S H P
Sbjct: 410 SCCPQHSPCGGSSQNHVLGHPHSSCFPPHSHHFP 443
>sp|Q3KJ31|MSBA_PSEPF Lipid A export ATP-binding/permease protein
msbA OS=Pseudomonas fluorescens (strain Pf0-1) GN=msbA
PE=3 SV=1
Length = 600
Score = 29.6 bits (65), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 243 NKITRFFLHSHGRVHFDNEEPEE*KLTNQKKH 148
N I RF+ H G + D E E+ KL N ++H
Sbjct: 399 NLIPRFYHHDKGEILIDGVEVEQYKLLNLRRH 430
>sp|Q9HUG8|MSBA_PSEAE Lipid A export ATP-binding/permease protein
msbA OS=Pseudomonas aeruginosa GN=msbA PE=3 SV=1
Length = 603
Score = 29.6 bits (65), Expect = 4.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 243 NKITRFFLHSHGRVHFDNEEPEE*KLTNQKKH 148
N + RF+ H+ G++ D E E+ +L N ++H
Sbjct: 401 NLVPRFYQHNDGKILLDGVEVEDYRLRNLRRH 432
>sp|Q52KN7|CPE1B_XENLA Cytoplasmic polyadenylation element-binding
protein 1-B OS=Xenopus laevis GN=cpeb1-B PE=2 SV=1
Length = 568
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 152 SINEFHCELCA-LPYKRHPSFTLSCFSFFDMLPWRIKEEGMQIYFKVFPA 6
++NE C LP + + + SC F +PW I E G+ F+VF A
Sbjct: 289 AVNEATCTWSGQLPPRNYKNPVYSCKVFLGGVPWDITETGLINTFRVFGA 338
>sp|Q91572|CPE1A_XENLA Cytoplasmic polyadenylation element-binding
protein 1-A OS=Xenopus laevis GN=cpeb1-A PE=1 SV=1
Length = 568
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -1
Query: 152 SINEFHCELCA-LPYKRHPSFTLSCFSFFDMLPWRIKEEGMQIYFKVFPA 6
++NE C LP + + + SC F +PW I E G+ F+VF A
Sbjct: 289 AVNEATCTWSGQLPPRNYKNPVYSCKVFLGGVPWDITETGLINTFRVFGA 338
>sp|Q4KJB2|MSBA_PSEF5 Lipid A export ATP-binding/permease protein
msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477) GN=msbA PE=3 SV=1
Length = 601
Score = 29.3 bits (64), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 243 NKITRFFLHSHGRVHFDNEEPEE*KLTNQKKH 148
N I RF+ H G++ D E E+ +L N ++H
Sbjct: 399 NLIPRFYHHDKGQILLDGTEVEDFRLLNLRRH 430
>sp|Q4R8E6|CB053_MACFA Uncharacterized protein C2orf53 homolog
OS=Macaca fascicularis GN=QtsA-12646 PE=2 SV=1
Length = 412
Score = 29.3 bits (64), Expect = 6.3
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 12/43 (27%)
Frame = +3
Query: 243 CPPCGFSKLNSSFPHLLSSC------------LFQYSSHHPLY 335
CPP GFS+L S PH L F SHHP +
Sbjct: 19 CPPWGFSQLVDSSPHNLQPLSAHQSLRPSHPPFFSTQSHHPSF 61
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| Report |
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