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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921024
Clone id YMU001_000144_F06
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGATATTACCTGCAGGTACTCCTGGAGTGACCACTCAGAATTCTCTACAGGGTAGATGA
ACCCTGTTGCTAGAAGCTTCCTCACCTCTTTGAGTAGTGCTTTCTCTTTGATGACTCCTA
ACCTTCGTAGCTTTTGTGCTTTAGGTTTGGCTCTGGCTTTAGCTCGATCTTGTGTTGAAT
GGCATCCACTCCACGTACATCTGTGTAATCTTTAGCAGAAAGCCTAGGAAACTTTCTTAG
CACACTTTTGAACTCCTCTCTTTCCTCCCAAGTAAGAGTCTTTGACAACATACCATCTAG
CATTTCTTCATCATGCAAACTTTGGTTCTCCTGTGGGCCTACCTCTTCTAAACCTTGGCA
AGATGTCTCTTTGTTATTTGGCCTAAAATTTACACCCATGACTTCAATGGATGACTCCTC
CTCCGTAGTGCTACCACTGCCTTCTTCTTTCGAGGTGTCATCGGTCCAATCATGCCCGCT
TTCACTTTGAGAAGATTCCTCATGGAGCTCCTCTTAACGTTGCTCCTTCATGTCAAGA
■■Homology search results ■■ -
sp_hit_id Q5UP41
Definition sp|Q5UP41|YR871_MIMIV Uncharacterized protein R871 OS=Acanthamoeba polyphaga mimivirus
Align length 92
Score (bit) 35.0
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921024|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_F06.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5UP41|YR871_MIMIV Uncharacterized protein R871 OS=Acanthamoe...    35   0.23 
sp|Q9ZZE4|CYB_ASIFL Cytochrome b OS=Asio flammeus GN=MT-CYB PE=3...    31   4.3  
sp|Q9ZZE3|CYB_AEGAC Cytochrome b OS=Aegolius acadicus GN=MT-CYB ...    31   4.3  
sp|Q35614|CYB_PONPY Cytochrome b OS=Pongo pygmaeus GN=MT-CYB PE=...    30   5.7  
sp|P92701|CYB_PONAB Cytochrome b OS=Pongo abelii GN=MT-CYB PE=3 ...    30   5.7  
sp|Q9MI64|CYB_LIPVE Cytochrome b OS=Lipotes vexillifer GN=MT-CYB...    30   7.4  
sp|Q9T9Y3|CYB_GORGO Cytochrome b OS=Gorilla gorilla gorilla GN=M...    30   7.4  

>sp|Q5UP41|YR871_MIMIV Uncharacterized protein R871 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R871 PE=3 SV=1
          Length = 561

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -2

Query: 357 QGLEEVGPQENQSLHDEEMLDGMLSKTLTWEEREEFKSVLRKFP-RLSAKDYTDVRGVDA 181
           Q ++++G   +   HD  +     S  ++ +  +E   V      + S+KD +  RG   
Sbjct: 78  QEIKQIGSPNSPGTHDVSLNLKRKSDKISEDTDQERVVVCESLENKSSSKDKSPSRGRSP 137

Query: 180 IQHKIELKPEPNLKHKSYEG*ESSKRKHYSKR 85
            +HK   K + + KHKS +  +SSKR   SKR
Sbjct: 138 KRHKSSKKHKSSKKHKSSKHDKSSKRDKSSKR 169


>sp|Q9ZZE4|CYB_ASIFL Cytochrome b OS=Asio flammeus GN=MT-CYB PE=3
           SV=1
          Length = 380

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 234 FLAHF*TPLFPPK*ESLTTYHLAFLHHANFGSPVGLP 344
           F  HF   L P    SLT  HL FLH +   +P+G+P
Sbjct: 180 FALHF---LLPFLIASLTLVHLTFLHESGSNNPLGIP 213


>sp|Q9ZZE3|CYB_AEGAC Cytochrome b OS=Aegolius acadicus GN=MT-CYB
           PE=3 SV=1
          Length = 380

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 234 FLAHF*TPLFPPK*ESLTTYHLAFLHHANFGSPVGLP 344
           F  HF   L P    +LT  HLAFLH +   +P+G+P
Sbjct: 180 FALHF---LLPFIIAALTLVHLAFLHESGSNNPLGIP 213


>sp|Q35614|CYB_PONPY Cytochrome b OS=Pongo pygmaeus GN=MT-CYB PE=3
           SV=2
          Length = 380

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 234 FLAHF*TPLFPPK*ESLTTYHLAFLHHANFGSPVGLP 344
           F  HF  P       +LTT HL FLH     +P+G+P
Sbjct: 179 FTLHFMLPFIIT---ALTTLHLLFLHETGSNNPLGIP 212


>sp|P92701|CYB_PONAB Cytochrome b OS=Pongo abelii GN=MT-CYB PE=3
           SV=1
          Length = 380

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 234 FLAHF*TPLFPPK*ESLTTYHLAFLHHANFGSPVGLP 344
           F  HF  P       +LTT HL FLH     +P+G+P
Sbjct: 179 FTLHFMLPFIIT---ALTTLHLLFLHETGSNNPLGIP 212


>sp|Q9MI64|CYB_LIPVE Cytochrome b OS=Lipotes vexillifer GN=MT-CYB
           PE=3 SV=1
          Length = 379

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 234 FLAHF*TPLFPPK*ESLTTYHLAFLHHANFGSPVGLP 344
           F  HF  P       +LTT HL FLH     +P+G+P
Sbjct: 179 FALHFILPFIIV---ALTTVHLLFLHETGSNNPMGIP 212


>sp|Q9T9Y3|CYB_GORGO Cytochrome b OS=Gorilla gorilla gorilla
           GN=MT-CYB PE=3 SV=1
          Length = 380

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 234 FLAHF*TPLFPPK*ESLTTYHLAFLHHANFGSPVGLP 344
           F  HF  P       +LTT HL FLH     +P+G+P
Sbjct: 179 FTFHFILPFIIT---ALTTLHLLFLHETGSNNPLGIP 212
tr_hit_id A5BW26
Definition tr|A5BW26|A5BW26_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 60
Score (bit) 32.7
E-value 0.039
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921024|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_F06.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BW26|A5BW26_VITVI Putative uncharacterized protein OS=Vitis...    33   0.039
tr|A5BAE8|A5BAE8_VITVI Putative uncharacterized protein OS=Vitis...    30   0.18 
tr|Q7XQC1|Q7XQC1_ORYSJ OSJNBb0060M15.10 protein (OSJNBb0021I10.3...    31   0.18 
tr|A5ACX9|A5ACX9_VITVI Putative uncharacterized protein OS=Vitis...    30   0.30 
tr|Q7X639|Q7X639_ORYSJ OSJNBb0067G11.5 protein OS=Oryza sativa s...    30   0.31 
tr|A5B504|A5B504_VITVI Putative uncharacterized protein OS=Vitis...    28   0.38 
tr|A7QJX4|A7QJX4_VITVI Chromosome undetermined scaffold_108, who...    28   0.39 
tr|A5AFI3|A5AFI3_VITVI Putative uncharacterized protein OS=Vitis...    28   0.39 
tr|A5B555|A5B555_VITVI Putative uncharacterized protein OS=Vitis...    28   0.39 
tr|A7QSL0|A7QSL0_VITVI Chromosome undetermined scaffold_161, who...    28   0.40 
tr|A5AP17|A5AP17_VITVI Putative uncharacterized protein OS=Vitis...    29   0.49 
tr|A5ADC2|A5ADC2_VITVI Putative uncharacterized protein OS=Vitis...    28   0.63 
tr|A5BNG4|A5BNG4_VITVI Putative uncharacterized protein OS=Vitis...    28   0.64 
tr|A5AQ03|A5AQ03_VITVI Putative uncharacterized protein OS=Vitis...    28   0.64 
tr|A5AEM1|A5AEM1_VITVI Putative uncharacterized protein OS=Vitis...    28   0.81 
tr|A5BYU9|A5BYU9_VITVI Putative uncharacterized protein OS=Vitis...    28   0.82 
tr|A5BH24|A5BH24_VITVI Putative uncharacterized protein OS=Vitis...    28   0.82 
tr|A5ATG4|A5ATG4_VITVI Putative uncharacterized protein OS=Vitis...    29   0.84 
tr|A5BLX8|A5BLX8_VITVI Putative uncharacterized protein OS=Vitis...    28   1.1  
tr|A5BXB8|A5BXB8_VITVI Putative uncharacterized protein OS=Vitis...    28   1.4  
tr|A5BCK1|A5BCK1_VITVI Putative uncharacterized protein OS=Vitis...    28   1.4  
tr|A5C1W7|A5C1W7_VITVI Putative uncharacterized protein OS=Vitis...    31   1.4  
tr|A5AGT6|A5AGT6_VITVI Putative uncharacterized protein OS=Vitis...    27   1.8  
tr|A7QXB5|A7QXB5_VITVI Chromosome undetermined scaffold_219, who...    27   1.8  
tr|Q6AU30|Q6AU30_ORYSJ Putative reverse transcriptase (Retrotran...    31   1.8  
tr|A5B0U4|A5B0U4_VITVI Putative uncharacterized protein OS=Vitis...    27   2.3  
tr|A5BUX2|A5BUX2_VITVI Putative uncharacterized protein OS=Vitis...    27   2.3  
tr|A5BVQ7|A5BVQ7_VITVI Putative uncharacterized protein OS=Vitis...    27   2.5  
tr|A5BLA6|A5BLA6_VITVI Putative uncharacterized protein OS=Vitis...    28   2.9  
tr|A5APG9|A5APG9_VITVI Putative uncharacterized protein OS=Vitis...    27   2.9  

>tr|A5BW26|A5BW26_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_038462 PE=4 SV=1
          Length = 1986

 Score = 32.7 bits (73), Expect(2) = 0.039
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -2

Query: 357  QGLEEVGPQENQSLHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVDAI 178
            +GL E  P +   L ++E    ++S TLT ++ +    VLRKF +      +D++G+  +
Sbjct: 1177 EGLPE--PSDYAYLEEDEKCPVVVSSTLTSDQEDSILGVLRKFKKAIGWQISDLKGISPL 1234



 Score = 27.3 bits (59), Expect(2) = 0.039
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 88   EVRKLLATGFIYPVENSEW 32
            EV KLL  G IYP+ +S W
Sbjct: 1267 EVLKLLQAGIIYPISDSLW 1285


>tr|A5BAE8|A5BAE8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015506 PE=4 SV=1
          Length = 1706

 Score = 30.0 bits (66), Expect(2) = 0.18
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -2

Query: 348 EEVGPQENQS-------LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRG 190
           EE+ P  NQ        L D+E    ++S TLT ++ +    VLRK  +      +D++G
Sbjct: 753 EEILPLFNQEDSQGYAYLEDDEKCPVVVSSTLTSDQEDSLLGVLRKCKKAIGWQISDLKG 812

Query: 189 VDAI 178
           +  +
Sbjct: 813 ISPL 816



 Score = 27.7 bits (60), Expect(2) = 0.18
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 106 EKALLKEVRKLLATGFIYPVENSEW 32
           ++ +  EV KLL  G IYP+ +S W
Sbjct: 843 QEVVRXEVLKLLQAGIIYPISDSLW 867


>tr|Q7XQC1|Q7XQC1_ORYSJ OSJNBb0060M15.10 protein (OSJNBb0021I10.3
           protein) OS=Oryza sativa subsp. japonica
           GN=OSJNBb0060M15.10 PE=4 SV=2
          Length = 1028

 Score = 30.8 bits (68), Expect(2) = 0.18
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -1

Query: 91  KEVRKLLATGFIYPVENSEW 32
           KEV KLL  G IYPV  SEW
Sbjct: 292 KEVLKLLHAGIIYPVPYSEW 311



 Score = 26.9 bits (58), Expect(2) = 0.18
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 318 LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVD--AIQHKIELKPE 151
           LH++     ++S  L+ +E +   +VL K   +      D+RG++     H+I + PE
Sbjct: 214 LHNDREAPVIISDKLSEDETQHLLTVLEKHRSVLGYSLQDLRGINPALCTHRIPIDPE 271


>tr|A5ACX9|A5ACX9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020988 PE=4 SV=1
          Length = 1536

 Score = 30.4 bits (67), Expect(2) = 0.30
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 106 EKALLKEVRKLLATGFIYPVENSEW 32
           ++ +  EV KLL  G IYP+ NS W
Sbjct: 835 QEVVQAEVLKLLQAGIIYPISNSPW 859



 Score = 26.6 bits (57), Expect(2) = 0.30
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 318 LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVDAI--QHKIELKPE 151
           L D +    ++S TLT  + +    VLR++ +      +D++G+  +   H I ++ E
Sbjct: 762 LEDNKKCPVVISSTLTIHQEDYLLEVLRRYKKAIGWQISDLKGISPLVCTHHIYMEDE 819


>tr|Q7X639|Q7X639_ORYSJ OSJNBb0067G11.5 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBb0067G11.5 PE=4 SV=2
          Length = 791

 Score = 30.4 bits (67), Expect(2) = 0.31
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -1

Query: 91  KEVRKLLATGFIYPVENSEW 32
           KEV KLL  G IYP+  SEW
Sbjct: 471 KEVLKLLHAGIIYPIPYSEW 490



 Score = 26.6 bits (57), Expect(2) = 0.31
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 318 LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVD--AIQHKIELKPE 151
           LH++     ++S  L+ +E +   +VL K   +      D+RG++     H+I + PE
Sbjct: 393 LHNDREAPVIISDKLSEDETQHLLTVLEKHRSILGYSLQDLRGINPALCTHRILIDPE 450


>tr|A5B504|A5B504_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026552 PE=4 SV=1
          Length = 2320

 Score = 28.5 bits (62), Expect(2) = 0.38
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 318 LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVDAI 178
           L D+E    ++S TLT ++ +    VLRK  +      +D++G+  +
Sbjct: 821 LEDDEKCPVVVSSTLTSDQEDSLLGVLRKCKKAIGWQISDLKGISPL 867



 Score = 28.1 bits (61), Expect(2) = 0.38
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 106 EKALLKEVRKLLATGFIYPVENSEW 32
           ++ +  EV KLL  G IYP+ +S W
Sbjct: 894 QEVVRNEVLKLLQAGIIYPISDSLW 918


>tr|A7QJX4|A7QJX4_VITVI Chromosome undetermined scaffold_108, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00000833001 PE=4 SV=1
          Length = 1615

 Score = 28.5 bits (62), Expect(2) = 0.39
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 318 LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVDAI 178
           L D+E    ++S TLT ++ +    VLRK  +      +D++G+  +
Sbjct: 665 LEDDEKCPVVVSSTLTSDQEDSLLGVLRKCKKAIGWQISDLKGISPL 711



 Score = 28.1 bits (61), Expect(2) = 0.39
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 106 EKALLKEVRKLLATGFIYPVENSEW 32
           ++ +  EV KLL  G IYP+ +S W
Sbjct: 738 QEVVRSEVLKLLQAGIIYPISDSLW 762


>tr|A5AFI3|A5AFI3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033278 PE=4 SV=1
          Length = 1467

 Score = 28.5 bits (62), Expect(2) = 0.39
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 318 LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVDAI 178
           L D+E    ++S TLT ++ +    VLRK  +      +D++G+  +
Sbjct: 517 LEDDEKCPVVVSSTLTSDQEDSLLGVLRKCKKAIGWQISDLKGISPL 563



 Score = 28.1 bits (61), Expect(2) = 0.39
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 106 EKALLKEVRKLLATGFIYPVENSEW 32
           ++ +  EV KLL  G IYP+ +S W
Sbjct: 590 QEVVRNEVLKLLQAGIIYPISDSLW 614


>tr|A5B555|A5B555_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023738 PE=4 SV=1
          Length = 1459

 Score = 28.5 bits (62), Expect(2) = 0.39
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 318 LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVDAI 178
           L D+E    ++S TLT ++ +    VLRK  +      +D++G+  +
Sbjct: 467 LEDDEKCPVVVSSTLTSDQEDSLLGVLRKCKKAIGWQISDLKGISPL 513



 Score = 28.1 bits (61), Expect(2) = 0.39
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 106 EKALLKEVRKLLATGFIYPVENSEW 32
           ++ +  EV KLL  G IYP+ +S W
Sbjct: 540 QEVVRNEVLKLLQAGIIYPISDSLW 564


>tr|A7QSL0|A7QSL0_VITVI Chromosome undetermined scaffold_161, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005910001 PE=4 SV=1
          Length = 794

 Score = 28.5 bits (62), Expect(2) = 0.40
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 318 LHDEEMLDGMLSKTLTWEEREEFKSVLRKFPRLSAKDYTDVRGVDAI 178
           L D+E    ++S TLT ++ +    VLRK  +      +D++G+  +
Sbjct: 693 LEDDEKCPVVVSSTLTSDQEDSLLGVLRKCKKAIGWQISDLKGISPL 739



 Score = 28.1 bits (61), Expect(2) = 0.40
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 106 EKALLKEVRKLLATGFIYPVENSEW 32
           ++ +  EV KLL  G IYP+ +S W
Sbjct: 766 QEVVRSEVLKLLQAGIIYPISDSLW 790