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NBDC - LSDB Archive
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BP921025
Clone id YMU001_000144_F07
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGATATTACCTGCAGGTACTCCTTGCAAGATGATGTAGTCATCTACACATAATGGTTCC
CCCTTAGAACCCTCGAATCACTAGCGTTTGAATCGTCGGTCACATAGCCGAACCCTGGTA
TCATTTGCCGTACCAGAGAACGCGCAATACCTGCTATCAACCCTCTGAGTGGATGTCTCC
TCCTTTTCTACTCTCTCAATCAAAATATTAATCAAGTGATTGGCCAGAGATGATACCCTT
TTTCCGGCAAGTTTCAACGACAATGAAAACCGTCCACATGCACATAAAGATTTCAATATC
TGAACAACATGATGACCGTCAAAAAATTGCAGAATGGGACAGTCTTCGCCAGCACTCATG
TCACTGACTCTACCAGTTGGAATTCCCTCAGCATCAGAGTTTGAGTTCAACAAAACTGGA
GCAGCATTCGCTCTTCGTTGAGGTAAAAAGTCTTTCCACCAATATAAAACTTCAACCACA
TCAGACAGAACCGAAGGTGGCAGTTCAACTTTGAAAATTCTGGGCAACTCATCAGGAGAA
A
■■Homology search results ■■ -
sp_hit_id Q24120
Definition sp|Q24120|CAPU_DROME Protein cappuccino OS=Drosophila melanogaster
Align length 79
Score (bit) 34.3
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921025|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_F07.
         (541 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q24120|CAPU_DROME Protein cappuccino OS=Drosophila melanogast...    34   0.40 
sp|Q9HZJ5|TOP1_PSEAE DNA topoisomerase 1 OS=Pseudomonas aerugino...    32   2.6  
sp|Q3ULZ2|FHDC1_MOUSE FH2 domain-containing protein 1 OS=Mus mus...    32   2.6  
sp|Q6NHS6|Y1055_CORDI UPF0286 protein DIP1055 OS=Corynebacterium...    31   3.4  
sp|Q00651|ITA4_MOUSE Integrin alpha-4 OS=Mus musculus GN=Itga4 P...    30   5.7  
sp|Q14CN4|K2C72_HUMAN Keratin, type II cytoskeletal 72 OS=Homo s...    30   5.8  
sp|P13612|ITA4_HUMAN Integrin alpha-4 OS=Homo sapiens GN=ITGA4 P...    30   7.5  

>sp|Q24120|CAPU_DROME Protein cappuccino OS=Drosophila melanogaster
           GN=capu PE=2 SV=2
          Length = 1059

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 316 PSKNCRMGQSSPALMSLTLPVGIPSASEFEFNKTGAAFALR*GKKSFHQYKTSTTSDRTE 495
           PSK C         ++LT  +    A+ +E+NKTGA   +    KSF   +T T S+  E
Sbjct: 409 PSKRC---------VNLTELLNASEATVYEYNKTGAEGCV----KSFTDAETQTESEDCE 455

Query: 496 G----GSSTLKILGNSSGE 540
           G    G S+ K+  N S +
Sbjct: 456 GTCKCGQSSTKVSDNESAK 474


>sp|Q9HZJ5|TOP1_PSEAE DNA topoisomerase 1 OS=Pseudomonas aeruginosa
           GN=topA PE=3 SV=1
          Length = 868

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 124 MIPGFGYVTDDSNASDSRVLRGNHYV*MTTSSCKEYL 14
           +IPG     DD   S+SRVLRG H   + +++   YL
Sbjct: 639 LIPGDEIAADDEGESESRVLRGKHRCPICSTAMDAYL 675


>sp|Q3ULZ2|FHDC1_MOUSE FH2 domain-containing protein 1 OS=Mus
           musculus GN=Fhdc1 PE=2 SV=2
          Length = 1149

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 308 HDDRQKIAEWDSLRQHSCH*LYQLEFPQHQSLSSTKLEQHSLFVEVKSLSTNIKL 472
           H   Q+  + D++  +    L  ++     SL  T+ E HSLFV  KSL  NI+L
Sbjct: 340 HFVAQEAQKQDAILLNFSEKLQHVQETSRLSLDITEAELHSLFVRTKSLQENIQL 394


>sp|Q6NHS6|Y1055_CORDI UPF0286 protein DIP1055 OS=Corynebacterium
           diphtheriae GN=DIP1055 PE=3 SV=1
          Length = 229

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +2

Query: 155 YQPSEWMSPPFLLSQSKY*SSDWPEMIPFF-------RQVSTTMKTVHMHIKISISE 304
           Y+P  WM+PP  L+++ +  S+  E IP +        Q+  T++ +H  +   + E
Sbjct: 44  YKPLNWMTPPCTLTETTHEESETGESIPLWIVENKKGEQLRITIEALHSDMYYDLGE 100


>sp|Q00651|ITA4_MOUSE Integrin alpha-4 OS=Mus musculus GN=Itga4 PE=1
           SV=1
          Length = 1039

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 27/99 (27%), Positives = 42/99 (42%)
 Frame = -3

Query: 407 NSNSDAEGIPTGRVSDMSAGEDCPILQFFDGHHVVQILKSLCACGRFSLSLKLAGKRVSS 228
           N  SD   + TG +   S+GE C   Q F    V  IL  +     + L   +  KR + 
Sbjct: 545 NGTSD---VITGSIRVSSSGEKCRTHQAFMRKDVRDILTPIHVEATYHLGHHVITKRNTE 601

Query: 227 LANHLINILIERVEKEETSTQRVDSRYCAFSGTANDTRV 111
               L  IL ++ EK+        +R+CA+   + D +V
Sbjct: 602 EFPPLQPILQQKKEKDVIRKMINFARFCAYENCSADLQV 640


>sp|Q14CN4|K2C72_HUMAN Keratin, type II cytoskeletal 72 OS=Homo
           sapiens GN=KRT72 PE=1 SV=2
          Length = 511

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 319 SKNCRMGQSSPALMSLTLPVGIPSASEFEFNKTGAAFALR*GKKSFHQYKTSTTSDRTEG 498
           S+ CRM    P  +S+++       S       GA F++  G  S + YKT+    +T+G
Sbjct: 433 SEECRMSGEYPNSVSISV------ISSTNAGAGGAGFSMGFGASSSYSYKTAAADVKTKG 486

Query: 499 --GSSTLKILGNSSG 537
             GS     L  +SG
Sbjct: 487 SCGSELKDPLAKTSG 501


>sp|P13612|ITA4_HUMAN Integrin alpha-4 OS=Homo sapiens GN=ITGA4 PE=1
           SV=2
          Length = 1032

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 28/120 (23%), Positives = 48/120 (40%)
 Frame = -3

Query: 470 VLYWWKDFLPQRRANAAPVLLNSNSDAEGIPTGRVSDMSAGEDCPILQFFDGHHVVQILK 291
           VL++       R+A + P    S++    + TG +   S   +C   Q F    V  IL 
Sbjct: 514 VLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRKDVRDILT 573

Query: 290 SLCACGRFSLSLKLAGKRVSSLANHLINILIERVEKEETSTQRVDSRYCAFSGTANDTRV 111
            +     + L   +  KR +     L  IL ++ EK+        +R+CA    + D +V
Sbjct: 574 PIQIEAAYHLGPHVISKRSTEEFPPLQPILQQKKEKDIMKKTINFARFCAHENCSADLQV 633
tr_hit_id A9RBK9
Definition tr|A9RBK9|A9RBK9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 128
Score (bit) 45.4
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921025|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_F07.
         (541 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RBK9|A9RBK9_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|B2V1A9|B2V1A9_CLOBA Ggdef domain protein OS=Clostridium botul...    42   0.016
tr|A0KNG8|A0KNG8_AERHH Tonin OS=Aeromonas hydrophila subsp. hydr...    37   0.50 
tr|Q5CRE5|Q5CRE5_CRYPV MDN1, midasin OS=Cryptosporidium parvum I...    35   3.3  
tr|Q381D6|Q381D6_9TRYP Putative uncharacterized protein OS=Trypa...    34   4.3  
tr|Q9VQV9|Q9VQV9_DROME Cappuccino, isoform D OS=Drosophila melan...    34   4.4  
tr|Q8MRP5|Q8MRP5_DROME Cappuccino, isoform B OS=Drosophila melan...    34   4.4  
tr|Q8IQ12|Q8IQ12_DROME Cappuccino, isoform J OS=Drosophila melan...    34   4.4  
tr|Q5BHU8|Q5BHU8_DROME AT04667p OS=Drosophila melanogaster GN=ca...    34   4.4  
tr|Q29QD2|Q29QD2_DROME AT18380p OS=Drosophila melanogaster GN=ca...    34   4.4  
tr|B7Z014|B7Z014_DROME Cappuccino, isoform G OS=Drosophila melan...    34   4.4  
tr|B7Z013|B7Z013_DROME Cappuccino, isoform I OS=Drosophila melan...    34   4.4  
tr|B7Z012|B7Z012_DROME Cappuccino, isoform H OS=Drosophila melan...    34   4.4  
tr|B7Z011|B7Z011_DROME Cappuccino, isoform F OS=Drosophila melan...    34   4.4  
tr|B7Z010|B7Z010_DROME Cappuccino, isoform E OS=Drosophila melan...    34   4.4  
tr|B6Q8W2|B6Q8W2_PENMA Putative uncharacterized protein OS=Penic...    34   5.7  
tr|Q71XI0|Q71XI0_LISMF Putative uncharacterized protein OS=Liste...    33   7.4  
tr|Q4ELE1|Q4ELE1_LISMO Putative uncharacterized protein OS=Liste...    33   7.4  
tr|A3WEB7|A3WEB7_9SPHN Putative uncharacterized protein OS=Eryth...    33   9.7  
tr|A7P0F5|A7P0F5_VITVI Chromosome chr19 scaffold_4, whole genome...    33   9.7  
tr|A5C204|A5C204_VITVI Putative uncharacterized protein OS=Vitis...    33   9.7  

>tr|A9RBK9|A9RBK9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_63938 PE=4 SV=1
          Length = 502

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 35/128 (27%), Positives = 60/128 (46%)
 Frame = -3

Query: 533 DELPRIFKVELPPSVLSDVVEVLYWWKDFLPQRRANAAPVLLNSNSDAEGIPTGRVSDMS 354
           D  P IFKVELPP++L+D++  +Y                 + +  +A G P  +    +
Sbjct: 365 DHYPEIFKVELPPNLLADILATIY---------------TFVKTEKNAAGSPERQQLLRA 409

Query: 353 AGEDCPILQFFDGHHVVQILKSLCACGRFSLSLKLAGKRVSSLANHLINILIERVEKEET 174
           A       +  D   +V++L+ +  CGRFSL +   G    ++   LI+ L E  +  +T
Sbjct: 410 A-----FNKAVDEDWIVRMLEEMTKCGRFSLVIGCIGATTHAMIRELISHLNES-DWCKT 463

Query: 173 STQRVDSR 150
           S +  DS+
Sbjct: 464 SYEAEDSK 471


>tr|B2V1A9|B2V1A9_CLOBA Ggdef domain protein OS=Clostridium botulinum
            (strain Alaska E43 / type E3) GN=CLH_0727 PE=4 SV=1
          Length = 1728

 Score = 42.4 bits (98), Expect = 0.016
 Identities = 27/93 (29%), Positives = 48/93 (51%)
 Frame = -3

Query: 449  FLPQRRANAAPVLLNSNSDAEGIPTGRVSDMSAGEDCPILQFFDGHHVVQILKSLCACGR 270
            F+ + + N A  LLN + D   +       ++A  +C ++    G ++  ILKSL   G+
Sbjct: 810  FISEGKYNEAKKLLNESMDIFKVENNYAGLLTAKINCEVINKETGKNIDDILKSLIDIGK 869

Query: 269  FSLSLKLAGKRVSSLANHLINILIERVEKEETS 171
             S+  K+  K+VSSL  H+  + IE  + ++ S
Sbjct: 870  LSVKYKVYKKQVSSLI-HIAKMNIEAFKYDKAS 901


>tr|A0KNG8|A0KNG8_AERHH Tonin OS=Aeromonas hydrophila subsp.
           hydrophila (strain ATCC 7966 / NCIB 9240) GN=AHA_3330
           PE=3 SV=1
          Length = 399

 Score = 37.4 bits (85), Expect = 0.50
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = -3

Query: 458 WKDFLPQRRANAAPVLLNSNSDAEGIPTGRVSDMSAGEDCPILQFFDGHHVVQILK---- 291
           W D+L   R+N A  L    SDA  +  G  + + AG+ C +    DG++ V  L+    
Sbjct: 278 WADYLLANRSNQAVTLSGIYSDAPAMSNGCAARLEAGQTCTLRLRADGNNTVGTLRVQGV 337

Query: 290 SLCACGRFSLSLKLAGKRVS 231
            L A      S +L G  +S
Sbjct: 338 ELTATNEQGASQRLEGAMIS 357


>tr|Q5CRE5|Q5CRE5_CRYPV MDN1, midasin OS=Cryptosporidium parvum Iowa
            II GN=cgd5_3110 PE=4 SV=1
          Length = 2893

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 247  ASFNDNENRP-HAHKDFNI*TT**PSKNCRMGQSSPALMSLTLPVGIPSASEFE 405
            +SFN+NE+   H+HKDF I  T  PS +    + SPAL +    + +PS S ++
Sbjct: 1973 SSFNNNEDYIIHSHKDFRIFATMNPSGDYGKRELSPALRNRFNEIFVPSLSMYQ 2026


>tr|Q381D6|Q381D6_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb11.01.8220 PE=4 SV=1
          Length = 406

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -3

Query: 500 PPSVLSDVVEVLYWWKDFLPQRRANAAPVLLNSNSDAEGIPTGRVSDMSAGEDCPILQFF 321
           PP V+  V      W+ FL  +R NA      + ++AEG+ TG  + +S G D   +Q  
Sbjct: 85  PPKVVPSVARSSQVWRTFLRGKRRNAGAHGQVAETEAEGLGTGSSNILSTGGDNTQIQAE 144

Query: 320 DGH 312
             H
Sbjct: 145 RSH 147


>tr|Q9VQV9|Q9VQV9_DROME Cappuccino, isoform D OS=Drosophila
           melanogaster GN=capu PE=2 SV=2
          Length = 1207

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 316 PSKNCRMGQSSPALMSLTLPVGIPSASEFEFNKTGAAFALR*GKKSFHQYKTSTTSDRTE 495
           PSK C         ++LT  +    A+ +E+NKTGA   +    KSF   +T T S+  E
Sbjct: 557 PSKRC---------VNLTELLNASEATVYEYNKTGAEGCV----KSFTDAETQTESEDCE 603

Query: 496 G----GSSTLKILGNSSGE 540
           G    G S+ K+  N S +
Sbjct: 604 GTCKCGQSSTKVSDNESAK 622


>tr|Q8MRP5|Q8MRP5_DROME Cappuccino, isoform B OS=Drosophila
           melanogaster GN=capu PE=2 SV=1
          Length = 1049

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 316 PSKNCRMGQSSPALMSLTLPVGIPSASEFEFNKTGAAFALR*GKKSFHQYKTSTTSDRTE 495
           PSK C         ++LT  +    A+ +E+NKTGA   +    KSF   +T T S+  E
Sbjct: 399 PSKRC---------VNLTELLNASEATVYEYNKTGAEGCV----KSFTDAETQTESEDCE 445

Query: 496 G----GSSTLKILGNSSGE 540
           G    G S+ K+  N S +
Sbjct: 446 GTCKCGQSSTKVSDNESAK 464


>tr|Q8IQ12|Q8IQ12_DROME Cappuccino, isoform J OS=Drosophila
           melanogaster GN=capu PE=4 SV=2
          Length = 1089

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 316 PSKNCRMGQSSPALMSLTLPVGIPSASEFEFNKTGAAFALR*GKKSFHQYKTSTTSDRTE 495
           PSK C         ++LT  +    A+ +E+NKTGA   +    KSF   +T T S+  E
Sbjct: 439 PSKRC---------VNLTELLNASEATVYEYNKTGAEGCV----KSFTDAETQTESEDCE 485

Query: 496 G----GSSTLKILGNSSGE 540
           G    G S+ K+  N S +
Sbjct: 486 GTCKCGQSSTKVSDNESAK 504


>tr|Q5BHU8|Q5BHU8_DROME AT04667p OS=Drosophila melanogaster GN=capu
           PE=2 SV=1
          Length = 1286

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 316 PSKNCRMGQSSPALMSLTLPVGIPSASEFEFNKTGAAFALR*GKKSFHQYKTSTTSDRTE 495
           PSK C         ++LT  +    A+ +E+NKTGA   +    KSF   +T T S+  E
Sbjct: 637 PSKRC---------VNLTELLNASEATVYEYNKTGAEGCV----KSFTDAETQTESEDCE 683

Query: 496 G----GSSTLKILGNSSGE 540
           G    G S+ K+  N S +
Sbjct: 684 GTCKCGQSSTKVSDNESAK 702


>tr|Q29QD2|Q29QD2_DROME AT18380p OS=Drosophila melanogaster GN=capu
           PE=2 SV=1
          Length = 1153

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 316 PSKNCRMGQSSPALMSLTLPVGIPSASEFEFNKTGAAFALR*GKKSFHQYKTSTTSDRTE 495
           PSK C         ++LT  +    A+ +E+NKTGA   +    KSF   +T T S+  E
Sbjct: 504 PSKRC---------VNLTELLNASEATVYEYNKTGAEGCV----KSFTDAETQTESEDCE 550

Query: 496 G----GSSTLKILGNSSGE 540
           G    G S+ K+  N S +
Sbjct: 551 GTCKCGQSSTKVSDNESAK 569