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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921030
Clone id YMU001_000144_G02
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACAATTGTTAGATCTACAACTTCCCTGTCTTTCTTGCTTCAGCTTCATTCCTATGAGGC
TGCTTATTCTAGTTGCTCTTATTTTTCAGGTATTAGAGCACTTTATGCCCTCCAGAAGAA
AGGACTGGAAAGTTGCTAACTACATTGCTTCCAGATGTTCTTCAACGACTCACCAGTAAG
CTTTAGCTGTTGTGTTGAAAAAGCAAAGCTCACATGACTTGAACATGAAGCATCACTACC
AAGAAGAAAAAGACCTTTTAACAATGGACAAAATTACCATAGTTGTGGGCAACGATGCTG
CACAGACACCTTCACGCTTTAAGGTGCGTTCGTCTACACCGGAAGCAACCACCTGTAACC
AAGAAAGTTCATCGAGTTACATCATGTTTTTCAGTATTTATTACTCTCAGAAAAACCCTG
AAGACAGGTCTACCAAGGGTGGAGCACATGCAAAACAAGCTGTTTCGCCAGGAATAAGAA
GCTGTATGTGTCCAGAGACAGCATCCTCCGATACTCCTGAAAGATATGCCCCATAAC
■■Homology search results ■■ -
sp_hit_id Q8VE47
Definition sp|Q8VE47|UBA5_MOUSE Ubiquitin-like modifier-activating enzyme 5 OS=Mus musculus
Align length 85
Score (bit) 89.0
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921030|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_G02.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VE47|UBA5_MOUSE Ubiquitin-like modifier-activating enzyme 5...    89   1e-17
sp|Q5M7A4|UBA5_RAT Ubiquitin-like modifier-activating enzyme 5 O...    89   2e-17
sp|Q54C02|UBA5_DICDI Ubiquitin-like modifier-activating enzyme 5...    89   2e-17
sp|Q9GZZ9|UBA5_HUMAN Ubiquitin-like modifier-activating enzyme 5...    88   3e-17
sp|Q5R8X4|UBA5_PONAB Ubiquitin-like modifier-activating enzyme 5...    86   9e-17
sp|Q75DY0|HEM3_ASHGO Porphobilinogen deaminase OS=Ashbya gossypi...    33   0.87 
sp|P31047|YLP1_PSEPU Uncharacterized protein in lpd-3 5'region (...    30   7.4  
sp|Q46LS0|PCBA_PROMT Divinyl chlorophyll a/b light-harvesting pr...    30   9.7  

>sp|Q8VE47|UBA5_MOUSE Ubiquitin-like modifier-activating enzyme 5
           OS=Mus musculus GN=Uba5 PE=2 SV=1
          Length = 403

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 48/85 (56%), Positives = 56/85 (65%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSE+AVSGHIQL+IPGE+ACFACAPPL                           VVAS
Sbjct: 203 SGVSENAVSGHIQLMIPGESACFACAPPL---------------------------VVAS 235

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
            +DE+TLKREGVCAASLPTTM +++
Sbjct: 236 NIDEKTLKREGVCAASLPTTMGVVA 260


>sp|Q5M7A4|UBA5_RAT Ubiquitin-like modifier-activating enzyme 5
           OS=Rattus norvegicus GN=Uba5 PE=2 SV=1
          Length = 403

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 47/85 (55%), Positives = 56/85 (65%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSE+AVSGHIQL++PGE+ACFACAPPL                           VVAS
Sbjct: 203 SGVSENAVSGHIQLMVPGESACFACAPPL---------------------------VVAS 235

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
            +DE+TLKREGVCAASLPTTM +++
Sbjct: 236 NIDEKTLKREGVCAASLPTTMGVVA 260


>sp|Q54C02|UBA5_DICDI Ubiquitin-like modifier-activating enzyme 5
           OS=Dictyostelium discoideum GN=uba5 PE=3 SV=1
          Length = 381

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 47/85 (55%), Positives = 55/85 (64%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSE+A+SGHIQL+IPGE+ACF C PPL                           +VAS
Sbjct: 174 SGVSENAISGHIQLIIPGESACFQCVPPL---------------------------IVAS 206

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           G+DERTLKREGVCAASLPTTM I++
Sbjct: 207 GIDERTLKREGVCAASLPTTMGIVA 231


>sp|Q9GZZ9|UBA5_HUMAN Ubiquitin-like modifier-activating enzyme 5
           OS=Homo sapiens GN=UBA5 PE=1 SV=1
          Length = 404

 Score = 87.8 bits (216), Expect = 3e-17
 Identities = 47/85 (55%), Positives = 56/85 (65%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSE+AVSGHIQL+IPGE+ACFACAPPL                           VVA+
Sbjct: 205 SGVSENAVSGHIQLIIPGESACFACAPPL---------------------------VVAA 237

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
            +DE+TLKREGVCAASLPTTM +++
Sbjct: 238 NIDEKTLKREGVCAASLPTTMGVVA 262


>sp|Q5R8X4|UBA5_PONAB Ubiquitin-like modifier-activating enzyme 5
           OS=Pongo abelii GN=UBA5 PE=2 SV=1
          Length = 404

 Score = 86.3 bits (212), Expect = 9e-17
 Identities = 46/85 (54%), Positives = 56/85 (65%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSE+AVSGHIQL+IPGE+ACFACAPPL                           VVA+
Sbjct: 205 SGVSENAVSGHIQLIIPGESACFACAPPL---------------------------VVAA 237

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
            +DE++LKREGVCAASLPTTM +++
Sbjct: 238 NIDEKSLKREGVCAASLPTTMGVVA 262


>sp|Q75DY0|HEM3_ASHGO Porphobilinogen deaminase OS=Ashbya gossypii
           GN=HEM3 PE=3 SV=1
          Length = 326

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 237 YQEEKDLLTMDKITIVV-GNDAAQTPSRFKVRSSTPEATTCNQ 362
           + EE  +LT+D + + V G DAA+    +K++S   +A  C Q
Sbjct: 261 FDEETSMLTLDGLVVSVDGADAAEATVSYKIKSDKEDAIACGQ 303


>sp|P31047|YLP1_PSEPU Uncharacterized protein in lpd-3 5'region
           (Fragment) OS=Pseudomonas putida PE=4 SV=1
          Length = 142

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +3

Query: 417 PEDRSTKGGAHAKQAVSPG---IRSCMCPE-TASSDTP 518
           PE R+   G  AKQ V+ G   +RSC+ PE  A++D P
Sbjct: 58  PEQRAMMEGVLAKQGVTVGGNGVRSCLTPEQVATNDIP 95


>sp|Q46LS0|PCBA_PROMT Divinyl chlorophyll a/b light-harvesting
           protein pcbA OS=Prochlorococcus marinus (strain NATL2A)
           GN=pcbA PE=3 SV=1
          Length = 349

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 201 KQSSHDLNMKHHYQEEKDLLTMDKITIVVGNDA 299
           +Q  +DLN+ H +  + D LT+D +  V+G  A
Sbjct: 175 RQVEYDLNLSHIWDHQFDFLTIDSLEDVMGGHA 207
tr_hit_id O23034
Definition tr|O23034|O23034_ARATH YUP8H12.3 protein OS=Arabidopsis thaliana
Align length 85
Score (bit) 99.8
E-value 8.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921030|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_G02.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O23034|O23034_ARATH YUP8H12.3 protein OS=Arabidopsis thaliana...   100   8e-20
tr|B7FKC6|B7FKC6_MEDTR Putative uncharacterized protein (Fragmen...    97   5e-19
tr|A7PHH5|A7PHH5_VITVI Chromosome chr17 scaffold_16, whole genom...    97   5e-19
tr|Q6K6K7|Q6K6K7_ORYSJ Os02g0506500 protein OS=Oryza sativa subs...    97   7e-19
tr|Q6K6K6|Q6K6K6_ORYSJ cDNA clone:001-046-D11, full insert seque...    97   7e-19
tr|Q6K6K5|Q6K6K5_ORYSJ cDNA clone:001-117-D08, full insert seque...    97   7e-19
tr|B6T6I3|B6T6I3_MAIZE Ubiquitin-activating enzyme E1 domain-con...    97   7e-19
tr|A3A780|A3A780_ORYSJ Putative uncharacterized protein OS=Oryza...    97   7e-19
tr|A9RCQ0|A9RCQ0_PHYPA Predicted protein OS=Physcomitrella paten...    96   9e-19
tr|A8HU09|A8HU09_CHLRE Predicted protein (Fragment) OS=Chlamydom...    92   2e-17
tr|B7Q170|B7Q170_IXOSC Putative uncharacterized protein (Fragmen...    91   5e-17
tr|B6PUW2|B6PUW2_BRAFL Putative uncharacterized protein OS=Branc...    89   1e-16
tr|B6L768|B6L768_BRAFL Putative uncharacterized protein OS=Branc...    89   1e-16
tr|A9XYC4|A9XYC4_9NEOP Putative hypothetical 44.9 kDa protein (F...    89   1e-16
tr|A9XYB2|A9XYB2_9MYRI Putative hypothetical 44.9 kDa protein (F...    89   1e-16
tr|Q3U9E7|Q3U9E7_MOUSE Putative uncharacterized protein OS=Mus m...    89   1e-16
tr|Q3U8X9|Q3U8X9_MOUSE Putative uncharacterized protein OS=Mus m...    89   1e-16
tr|Q3TG27|Q3TG27_MOUSE Putative uncharacterized protein OS=Mus m...    89   1e-16
tr|A9XYC1|A9XYC1_9CHEL Putative hypothetical 44.9 kDa protein (F...    89   1e-16
tr|A9XYB6|A9XYB6_9MYRI Putative hypothetical 44.9 kDa protein (F...    89   1e-16
tr|A9XYC2|A9XYC2_9NEOP Putative hypothetical 44.9 kDa protein (F...    89   2e-16
tr|Q4S4Z5|Q4S4Z5_TETNG Chromosome 6 SCAF14737, whole genome shot...    88   2e-16
tr|A9XYB3|A9XYB3_LIMPO Putative hypothetical 44.9 kDa protein (F...    88   2e-16
tr|A9XYB1|A9XYB1_FORAU Putative hypothetical 44.9 kDa protein (F...    88   2e-16
tr|Q6IVA4|Q6IVA4_CHICK Ubiquitin activating enzyme-like protein ...    88   3e-16
tr|Q4R920|Q4R920_MACFA Testis cDNA clone: QtsA-10914, similar to...    88   3e-16
tr|A7MAZ3|A7MAZ3_BOVIN UBA5 protein OS=Bos taurus GN=UBA5 PE=2 SV=1    88   3e-16
tr|A6NJL3|A6NJL3_HUMAN Putative uncharacterized protein UBA5 OS=...    88   3e-16
tr|Q6GLG7|Q6GLG7_XENTR Ubiquitin-like modifier activating enzyme...    87   7e-16
tr|Q3KQ23|Q3KQ23_XENLA MGC131082 protein OS=Xenopus laevis GN=ub...    87   7e-16

>tr|O23034|O23034_ARATH YUP8H12.3 protein OS=Arabidopsis thaliana
           GN=YUP8H12.3 PE=4 SV=1
          Length = 445

 Score = 99.8 bits (247), Expect = 8e-20
 Identities = 55/85 (64%), Positives = 63/85 (74%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLL+PGETACFACAPPL ++  GF             D +    VVAS
Sbjct: 218 SGVSEDAVSGHIQLLVPGETACFACAPPLWNM-GGF------------KDSVIQGIVVAS 264

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           G+DERTLKREGVCAASLPTTM +++
Sbjct: 265 GIDERTLKREGVCAASLPTTMGVVA 289


>tr|B7FKC6|B7FKC6_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 407

 Score = 97.1 bits (240), Expect = 5e-19
 Identities = 53/85 (62%), Positives = 57/85 (67%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLLIPGETACFACAPPL                           VVAS
Sbjct: 220 SGVSEDAVSGHIQLLIPGETACFACAPPL---------------------------VVAS 252

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           G+DERTLKREGVCAASLPTTM +++
Sbjct: 253 GIDERTLKREGVCAASLPTTMGVIA 277


>tr|A7PHH5|A7PHH5_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017943001
           PE=4 SV=1
          Length = 427

 Score = 97.1 bits (240), Expect = 5e-19
 Identities = 54/85 (63%), Positives = 57/85 (67%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLLIPGETACFACAPPL                           VVAS
Sbjct: 220 SGVSEDAVSGHIQLLIPGETACFACAPPL---------------------------VVAS 252

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           GVDERTLKREGVCAASLPTTM +++
Sbjct: 253 GVDERTLKREGVCAASLPTTMGVVA 277


>tr|Q6K6K7|Q6K6K7_ORYSJ Os02g0506500 protein OS=Oryza sativa subsp.
           japonica GN=P0047E05.15-2 PE=4 SV=1
          Length = 421

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 53/85 (62%), Positives = 57/85 (67%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLL+PGETACFACAPPL                           VVAS
Sbjct: 212 SGVSEDAVSGHIQLLVPGETACFACAPPL---------------------------VVAS 244

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           GVDERTLKREGVCAASLPTTM +++
Sbjct: 245 GVDERTLKREGVCAASLPTTMGVVA 269


>tr|Q6K6K6|Q6K6K6_ORYSJ cDNA clone:001-046-D11, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0047E05.15-3 PE=2
           SV=1
          Length = 401

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 53/85 (62%), Positives = 57/85 (67%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLL+PGETACFACAPPL                           VVAS
Sbjct: 192 SGVSEDAVSGHIQLLVPGETACFACAPPL---------------------------VVAS 224

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           GVDERTLKREGVCAASLPTTM +++
Sbjct: 225 GVDERTLKREGVCAASLPTTMGVVA 249


>tr|Q6K6K5|Q6K6K5_ORYSJ cDNA clone:001-117-D08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0047E05.15-1 PE=2
           SV=1
          Length = 396

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 53/85 (62%), Positives = 57/85 (67%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLL+PGETACFACAPPL                           VVAS
Sbjct: 212 SGVSEDAVSGHIQLLVPGETACFACAPPL---------------------------VVAS 244

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           GVDERTLKREGVCAASLPTTM +++
Sbjct: 245 GVDERTLKREGVCAASLPTTMGVVA 269


>tr|B6T6I3|B6T6I3_MAIZE Ubiquitin-activating enzyme E1
           domain-containing protein 1 OS=Zea mays PE=2 SV=1
          Length = 397

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 53/85 (62%), Positives = 57/85 (67%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLL+PGETACFACAPPL                           VVAS
Sbjct: 187 SGVSEDAVSGHIQLLVPGETACFACAPPL---------------------------VVAS 219

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           GVDERTLKREGVCAASLPTTM +++
Sbjct: 220 GVDERTLKREGVCAASLPTTMGVVA 244


>tr|A3A780|A3A780_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006652 PE=4 SV=1
          Length = 798

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 53/85 (62%), Positives = 57/85 (67%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLL+PGETACFACAPPL                           VVAS
Sbjct: 589 SGVSEDAVSGHIQLLVPGETACFACAPPL---------------------------VVAS 621

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           GVDERTLKREGVCAASLPTTM +++
Sbjct: 622 GVDERTLKREGVCAASLPTTMGVVA 646


>tr|A9RCQ0|A9RCQ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_111718 PE=4 SV=1
          Length = 404

 Score = 96.3 bits (238), Expect = 9e-19
 Identities = 54/85 (63%), Positives = 57/85 (67%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAVSGHIQLLIPGETACFACAPPL                           VVAS
Sbjct: 190 SGVSEDAVSGHIQLLIPGETACFACAPPL---------------------------VVAS 222

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           GVDE+TLKREGVCAASLPTTM I++
Sbjct: 223 GVDEKTLKREGVCAASLPTTMGIVA 247


>tr|A8HU09|A8HU09_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_113805 PE=4
           SV=1
          Length = 329

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 50/85 (58%), Positives = 55/85 (64%)
 Frame = -3

Query: 520 SGVSEDAVSGHIQLLIPGETACFACAPPLVDLSSGFF*E**ILKNMM*LDELSWLQVVAS 341
           SGVSEDAV+GHIQLL+PGETACF C PPL                           VVAS
Sbjct: 178 SGVSEDAVAGHIQLLVPGETACFQCVPPL---------------------------VVAS 210

Query: 340 GVDERTLKREGVCAASLPTTMVILS 266
           G+DERTLKREGVCAASLPTTM I++
Sbjct: 211 GIDERTLKREGVCAASLPTTMGIVA 235