NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921036
Clone id YMU001_000144_G08
Library
Length 389
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGATCAAAAAGCCCTGCAAGAAGCCATAAGTCATCCCAAAACAAAGAACATCGGCATCTC
GCAGCTTCAAGGCAACTCAGCAAAGGTAAAATACTCCTGGGATTCACAACAAAATGGAAA
TAAATGCATGGAATGCCTTCTCACCCTCCACGCTTCCAACATCAGCATCTCGCAGCTTCA
AGGCAACTCAGCAAAGGTAAAATACTCCTGGGATTCACAACAAAATGGAAATAAATGCAT
GGAATGCCTTCTCACCCCCCACGCCCCGAACCTCCCCTAGTTCGTGCAACTCTCTTGCAA
CCTTTTGGAGCCGGGCTGAGCTTACTGCATGGCATCTGACCACAATTCAATGTGGCCTCT
TGCTTGAAGTCCATCTCCTCGCTAGTAAT
■■Homology search results ■■ -
sp_hit_id Q9FJL0
Definition sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana
Align length 83
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921036|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_G08.
         (389 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes prote...    32   1.3  
sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyost...    30   4.9  
sp|P57602|SYW_BUCAI Tryptophanyl-tRNA synthetase OS=Buchnera aph...    29   6.4  
sp|Q134R9|RPOC_RHOPS DNA-directed RNA polymerase subunit beta' O...    29   6.4  
sp|P21849|TSA4_GIALA Major surface-labeled trophozoite antigen 4...    29   8.4  
sp|Q759M1|SIP5_ASHGO Protein SIP5 OS=Ashbya gossypii GN=SIP5 PE=...    29   8.4  
sp|Q5PQR4|RSRC2_RAT Arginine/serine-rich coiled-coil protein 2 O...    29   8.4  
sp|Q5R8J6|RSRC2_PONAB Arginine/serine-rich coiled-coil protein 2...    29   8.4  
sp|A2RTL5|RSRC2_MOUSE Arginine/serine-rich coiled-coil protein 2...    29   8.4  
sp|Q7L4I2|RSRC2_HUMAN Arginine/serine-rich coiled-coil protein 2...    29   8.4  
sp|A6QLS2|RSRC2_BOVIN Arginine/serine-rich coiled-coil protein 2...    29   8.4  
sp|Q7VQM0|PNP_BLOFL Polyribonucleotide nucleotidyltransferase OS...    29   8.4  

>sp|Q9FJL0|SMC4_ARATH Structural maintenance of chromosomes protein 4
            OS=Arabidopsis thaliana GN=SMC4 PE=2 SV=1
          Length = 1241

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +2

Query: 5    QKALQEAISHPKTKNIG-ISQLQGNSAKVKYSWDSQQNGNKCMECLLTLHASNISISQLQ 181
            Q A  EA S PKT  I  + +L+   +K +   ++ + G+K ++  L  +  N    +L+
Sbjct: 783  QLASLEAASQPKTDEIDRLKELKKIISKEEKEIENLEKGSKQLKDKLQTNIENAGGEKLK 842

Query: 182  GNSAKV-KYSWDSQQNGNKCMEC 247
            G  AKV K   D  +N  +   C
Sbjct: 843  GQKAKVEKIQTDIDKNNTEINRC 865


>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6
           OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1
          Length = 1201

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +2

Query: 44  KNIGISQLQGNSAKVKYSWDSQQNGNKCMECLLTLHASNISISQLQGNSAKVKYSWDSQQ 223
           K I ISQL+    ++ + +D  +  +  ++CL++L+    S++   G+  K+K   ++  
Sbjct: 354 KFINISQLKSIPTEIDFEFDISKEYDYLVDCLVSLNTLK-SLNLFNGSWIKIKNITNNNN 412

Query: 224 NGN 232
           N N
Sbjct: 413 NNN 415


>sp|P57602|SYW_BUCAI Tryptophanyl-tRNA synthetase OS=Buchnera
           aphidicola subsp. Acyrthosiphon pisum GN=trpS PE=3 SV=1
          Length = 335

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 71  GNSAKVKYSWDSQQNGNKCMECLLTLHASNISISQLQGNSA 193
           GN       W   QN  +C+ C+  LHA  I  +++  N +
Sbjct: 21  GNYIGTMRHWSKMQNNYECLYCIADLHALTIQKNKIHLNKS 61


>sp|Q134R9|RPOC_RHOPS DNA-directed RNA polymerase subunit beta'
           OS=Rhodopseudomonas palustris (strain BisB5) GN=rpoC
           PE=3 SV=1
          Length = 1400

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 83  KVKYSWDSQQNGNKCMECLLTLHASNISISQLQGNSAKVKY 205
           K+KY WDS  +  K  + L+   A  I + Q+   S K+ Y
Sbjct: 549 KIKYRWDSLDDEGKPYKRLIETTAGRILLGQVLPKSVKLPY 589


>sp|P21849|TSA4_GIALA Major surface-labeled trophozoite antigen 417
           OS=Giardia lamblia GN=TSA 417 PE=2 SV=1
          Length = 713

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
 Frame = +2

Query: 47  NIGISQLQGNSAKVK--YSWDSQQNGNKCMECLLTLHASNISISQLQGNSAKV-KYSWDS 217
           N+ + + Q NS       + D  +NGNKC+ C             L G  A     S+D 
Sbjct: 189 NVCVDKAQCNSGSTNKFVAVDDSENGNKCVSC----------SDNLNGGVANCDTCSYDE 238

Query: 218 QQNGNKCMEC 247
           Q    KC +C
Sbjct: 239 QSKKIKCTKC 248


>sp|Q759M1|SIP5_ASHGO Protein SIP5 OS=Ashbya gossypii GN=SIP5 PE=3
           SV=1
          Length = 476

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 98  WDSQQNGNKCMECLLTLHASNISISQLQGNSAKVKYSWDSQQNGNKCMECLL 253
           W  ++N +K +E  L    + +S + L  + AK    WD  +NG +C  C L
Sbjct: 218 WQEEEN-SKFLELKLEARRTGVSSACLPSDDAK----WDLYRNGAECPICFL 264


>sp|Q5PQR4|RSRC2_RAT Arginine/serine-rich coiled-coil protein 2
           OS=Rattus norvegicus GN=Rsrc2 PE=2 SV=1
          Length = 376

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   RSKSPARSHKSSQNKEHRHLAASRQLSKGK 90
           R  S  RSH  S+++E RH + SR+  K +
Sbjct: 58  RKSSRGRSHSRSRSRERRHRSRSRERKKSR 87


>sp|Q5R8J6|RSRC2_PONAB Arginine/serine-rich coiled-coil protein 2
           OS=Pongo abelii GN=RSRC2 PE=2 SV=1
          Length = 435

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   RSKSPARSHKSSQNKEHRHLAASRQLSKGK 90
           R  S  RSH  S+++E RH + SR+  K +
Sbjct: 117 RKSSRGRSHSRSRSRERRHRSRSRERKKSR 146


>sp|A2RTL5|RSRC2_MOUSE Arginine/serine-rich coiled-coil protein 2
           OS=Mus musculus GN=Rsrc2 PE=2 SV=1
          Length = 376

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   RSKSPARSHKSSQNKEHRHLAASRQLSKGK 90
           R  S  RSH  S+++E RH + SR+  K +
Sbjct: 58  RKSSRGRSHSRSRSRERRHRSRSRERKKSR 87


>sp|Q7L4I2|RSRC2_HUMAN Arginine/serine-rich coiled-coil protein 2
           OS=Homo sapiens GN=RSRC2 PE=1 SV=1
          Length = 434

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   RSKSPARSHKSSQNKEHRHLAASRQLSKGK 90
           R  S  RSH  S+++E RH + SR+  K +
Sbjct: 117 RKSSRGRSHSRSRSRERRHRSRSRERKKSR 146
tr_hit_id B6V3C2
Definition tr|B6V3C2|B6V3C2_MAIZE PAN1 OS=Zea mays
Align length 51
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921036|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_G08.
         (389 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6V3C2|B6V3C2_MAIZE PAN1 OS=Zea mays GN=pan1 PE=4 SV=1              36   0.84 
tr|Q6Z3S1|Q6Z3S1_ORYSJ Os08g0506400 protein OS=Oryza sativa subs...    35   1.9  
tr|A2YWU2|A2YWU2_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|Q22A56|Q22A56_TETTH Cation channel family protein OS=Tetrahym...    34   3.2  
tr|Q22KY4|Q22KY4_TETTH Neurohypophysial hormones, N-terminal Dom...    33   5.5  

>tr|B6V3C2|B6V3C2_MAIZE PAN1 OS=Zea mays GN=pan1 PE=4 SV=1
          Length = 662

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +1

Query: 235 MHGMPSHPPRPEPPLVRATLLQPFGAGLSLLHGI*PQFNVASCLKSISSLV 387
           +HG P+  P P P  VR +++Q    GL+ LH   P+  V  C+KS   L+
Sbjct: 454 LHGGPTASPTPLPWSVRLSIVQGAARGLAYLHECSPRRYVHGCIKSSKILL 504


>tr|Q6Z3S1|Q6Z3S1_ORYSJ Os08g0506400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0025J22.33 PE=2 SV=1
          Length = 657

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 235 MHGMPSHPPRPEPPLVRATLLQPFGAGLSLLHGI*PQFNVASCLKSISSLV 387
           +HG P+  P P P  +R +++Q    GL+ LH   P+  V  C+KS   L+
Sbjct: 448 LHGGPTASPTPLPWSMRLSIVQGAARGLAYLHECSPRRYVHGCIKSSKILL 498


>tr|A2YWU2|A2YWU2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29807 PE=4 SV=1
          Length = 657

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 235 MHGMPSHPPRPEPPLVRATLLQPFGAGLSLLHGI*PQFNVASCLKSISSLV 387
           +HG P+  P P P  +R +++Q    GL+ LH   P+  V  C+KS   L+
Sbjct: 448 LHGGPTASPTPLPWSMRLSIVQGAARGLAYLHECSPRRYVHGCIKSSKILL 498


>tr|Q22A56|Q22A56_TETTH Cation channel family protein OS=Tetrahymena
            thermophila SB210 GN=TTHERM_01277520 PE=4 SV=1
          Length = 2629

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 29   SHPKTKNIGISQLQGNSAKVKYSWDSQ-QNGNKCMECLLTLHASNISISQLQGNSAKVKY 205
            SH  + +  +  L  +  +++YS D Q QN    +  L+ LH  NIS  Q+      V Y
Sbjct: 2374 SHKNSFSKSLKLLNQSQKELRYSVDQQIQN----IAALMFLHNKNISSQQINN----VNY 2425

Query: 206  SWDSQQNGNKC 238
            ++  QQN +KC
Sbjct: 2426 NYSYQQNSSKC 2436


>tr|Q22KY4|Q22KY4_TETTH Neurohypophysial hormones, N-terminal Domain
            containing protein OS=Tetrahymena thermophila SB210
            GN=TTHERM_01178710 PE=4 SV=1
          Length = 1594

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +2

Query: 86   VKYSWDSQ-----QNGNKCMECLLTLHASNISISQLQGNSAKVKYSWDSQQNGNKCMEC 247
            V  +WDS      QNG++C+ C+     +N   S+ Q N +       SQ +GN+C +C
Sbjct: 966  VNNAWDSNCNQCNQNGDQCLTCINGYQLNN---SKTQCNCSVQNCIQCSQYDGNQCQQC 1021