BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921043|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_H04.
         (594 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4IHD9|MED25_XENTR Mediator of RNA polymerase II transcriptio...    32   2.4  
sp|Q30134|2B18_HUMAN HLA class II histocompatibility antigen, DR...    31   5.3  
sp|P0ABL5|NAPC_ECOLI Cytochrome c-type protein napC OS=Escherich...    30   7.0  
sp|P0ABL6|NAPC_ECOL6 Cytochrome c-type protein napC OS=Escherich...    30   7.0  
sp|P0ABL7|NAPC_ECO57 Cytochrome c-type protein napC OS=Escherich...    30   7.0  
sp|Q615A2|SPCS2_CAEBR Probable signal peptidase complex subunit ...    30   9.1  

>sp|A4IHD9|MED25_XENTR Mediator of RNA polymerase II transcription
           subunit 25 OS=Xenopus tropicalis GN=med25 PE=2 SV=1
          Length = 805

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 329 HRTQKGTSGHTP*SGLAHPYNHEAPTD*EGK*PLKRPAKERKRRSSREQGGHQRGNQAPI 150
           H  Q+   G  P   +     H+AP    G+  L+ P +    ++  +Q G+Q   +API
Sbjct: 713 HHMQQAAQGMLPHQAMGQQMQHQAP----GQQQLQLPGQTLMHQAPAQQWGNQMQQRAPI 768

Query: 149 P 147
           P
Sbjct: 769 P 769


>sp|Q30134|2B18_HUMAN HLA class II histocompatibility antigen,
           DRB1-8 beta chain OS=Homo sapiens GN=HLA-DRB1 PE=2 SV=2
          Length = 266

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 129 LVCHKLGDGSLVASLMATLFP*TSPFSLFGWSFKRSLPLLVGRCF 263
           +VC +L  GS +A L  TL   +SP +L G +  R L    G C+
Sbjct: 1   MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTGECY 45


>sp|P0ABL5|NAPC_ECOLI Cytochrome c-type protein napC OS=Escherichia
           coli (strain K12) GN=napC PE=1 SV=1
          Length = 200

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -3

Query: 208 EKGEVHGNKVAINEATRLPSPNL*HTRNAHTLFSTSLNLQKQSLAKLHVTNSKTHQKC 35
           +K E H   +A NE  R+   N    RN H         QK   AK+H    K  Q C
Sbjct: 122 QKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTAQKSVAAKMHDQAVKDGQTC 179


>sp|P0ABL6|NAPC_ECOL6 Cytochrome c-type protein napC OS=Escherichia
           coli O6 GN=napC PE=3 SV=1
          Length = 200

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -3

Query: 208 EKGEVHGNKVAINEATRLPSPNL*HTRNAHTLFSTSLNLQKQSLAKLHVTNSKTHQKC 35
           +K E H   +A NE  R+   N    RN H         QK   AK+H    K  Q C
Sbjct: 122 QKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTAQKSVAAKMHDQAVKDGQTC 179


>sp|P0ABL7|NAPC_ECO57 Cytochrome c-type protein napC OS=Escherichia
           coli O157:H7 GN=napC PE=3 SV=1
          Length = 200

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -3

Query: 208 EKGEVHGNKVAINEATRLPSPNL*HTRNAHTLFSTSLNLQKQSLAKLHVTNSKTHQKC 35
           +K E H   +A NE  R+   N    RN H         QK   AK+H    K  Q C
Sbjct: 122 QKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTAQKSVAAKMHDQAVKDGQTC 179


>sp|Q615A2|SPCS2_CAEBR Probable signal peptidase complex subunit 2
           OS=Caenorhabditis briggsae GN=CBG15767 PE=3 SV=1
          Length = 180

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 48  VLELVTWSFAKDCFCKFNEVENK---VWAFLVCHKLGDGSLVAS 170
           VL+L  W   KDCF + NEV+ K    WA+    K  D   V S
Sbjct: 88  VLQLFQWYVEKDCFYEANEVDGKQTRKWAWSSEIKAHDDKYVLS 131

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921043|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_H04.
         (594 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9W009|Q9W009_DROME CG1146, isoform A OS=Drosophila melanogas...    34   5.5  
tr|Q22442|Q22442_CAEEL Neuropeptide-like protein protein 16 OS=C...    34   5.5  

>tr|Q9W009|Q9W009_DROME CG1146, isoform A OS=Drosophila melanogaster
           GN=CG1146 PE=1 SV=1
          Length = 315

 Score = 34.3 bits (77), Expect = 5.5
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
 Frame = -3

Query: 370 EDRASTTCINRTNFIGLKRGHQVTHHNQALHILITMKHLPTKRGSD------LLKDQPKR 209
           E R ST C++R   I  +   Q+ H  Q +H+   ++  P+K+ S       +    P+R
Sbjct: 146 ESRDSTPCVSRKTSIASQLSAQLQHIEQTMHLWQELEEEPSKKASSHNDWEPMAVPVPRR 205

Query: 208 EKGEVHGNKVAINEATRLP---SPNL*HTRNAHTLF---STSLNLQKQSLAKLHVTNSKT 47
            +G       +   +T  P   SP L H+R+   L    S  L    + + ++   +++ 
Sbjct: 206 TRG------TSATPSTASPLSSSPELEHSRSPVLLRKPPSLCLQTSMEDIFQVIARSAEE 259

Query: 46  HQKCP 32
            + CP
Sbjct: 260 PEDCP 264


>tr|Q22442|Q22442_CAEEL Neuropeptide-like protein protein 16
           OS=Caenorhabditis elegans GN=nlp-16 PE=2 SV=2
          Length = 326

 Score = 34.3 bits (77), Expect = 5.5
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -2

Query: 374 DRR*SEHYVHQSYKFHRTQKGTSGHTP*SGLAHPYNHEAPTD*EGK*PLKRPAKERKRRS 195
           ++R SEH  H     H  ++ T  H       HP+  +A    EG    K      ++RS
Sbjct: 91  EKRHSEHLPHPDPPSHTAKRSTEHHRVKRSEGHPHEKKATHSPEGHIVAKDDHHGHEKRS 150

Query: 194 SREQGGHQR 168
           S    GHQ+
Sbjct: 151 SDSHHGHQK 159