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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921045
Clone id YMU001_000144_H06
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATAAAAGTACACGTTTTTGTGTAATAATTATCATATGATACACATTTTGAAAAGTGATG
GCCCCAGGGTTTTGGAAGCGCCTTTGAAAAATTAAATCAGAAGTCCCCAATTTCATTCAA
TATGAACACCATTCTTCTAGTTTTTTTCCGCTTTCTTTCAATAGCGACACGATTCTTTCA
CTGGGAAAAAACCACGCCAGTGTTCTATTATTACAAACTATACAATGCTCATTTATCTTG
GTATCTCATCCACCAATTTCTGGATGGTCCCTCCAGAGCAATCCCGCAATTTCCACCTAC
TACACGCAATTGATATCAGTGTGCCAAAAACTCCATATGCAGATGCTAGCATCGTCATCA
GAATCAAAATCCCAACATCTTCATCAACTGCAGCTCACATCACATGACCTTGAATGTATG
TACATCACTGATCAATGGAAAAGGAATACCTCAAGAATGACGGAGAAAAAATGAGACGAT
TCTTCGAGTACCTGCAGGTAATATCT
■■Homology search results ■■ -
sp_hit_id A8WVM4
Definition sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
Align length 70
Score (bit) 36.6
E-value 0.069
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921045|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_H06.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=...    37   0.069
sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapi...    30   6.5  
sp|A6H8M9|CAD29_HUMAN Cadherin-like protein 29 OS=Homo sapiens G...    30   8.4  

>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6
           OS=Caenorhabditis briggsae GN=rme-6 PE=3 SV=1
          Length = 1104

 Score = 36.6 bits (83), Expect = 0.069
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +1

Query: 301 YTQLISVCQKLHMQMLASSSESKSQHLHQLQLTSHDLECMYITDQWK----RNTSRMTEK 468
           Y Q   +  K+  Q L + +ES S H H+ ++   DLE   +T+ W+     N SR  + 
Sbjct: 14  YRQFYELATKIRNQKLLADAESASLHRHKQEVA--DLEVKLLTEAWRSSYWTNVSRQLKS 71

Query: 469 K*DDSSSTCR 498
           +  D S  CR
Sbjct: 72  QSLDPSYACR 81


>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens
           GN=DNAH1 PE=1 SV=3
          Length = 4330

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
 Frame = +1

Query: 238 LVSHPPISGW---------SLQSNPAISTYYTQLISVCQKLHMQMLASSSESKSQHL--- 381
           LVS P    W         SL + P + T  +++ + C K+    L  SS SK  HL   
Sbjct: 483 LVSVPKYHFWEQKEDFTFVSLLTRPEVITALSKVRAECNKVTAMSLFHSSLSKYSHLEEF 542

Query: 382 HQLQLTSHDLECMYITDQW 438
            Q+Q  +     M++ D W
Sbjct: 543 EQIQSQTFSQVQMFLKDSW 561


>sp|A6H8M9|CAD29_HUMAN Cadherin-like protein 29 OS=Homo sapiens
           GN=CDH29 PE=2 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 198 QCSIITNYTMLIYLGISSTNFWMVPPEQSRNFHLLHAIDISVPKTPY--ADASIVIRIKI 371
           Q   I    +L++  +    FW   PEQ R + LL  +  + P TP+    A+I++ + +
Sbjct: 595 QNRFILQGAILVHSDLVLGPFW---PEQPRTYELLICVADAGPSTPHLSTTATIIVHL-V 650

Query: 372 PTSSSTAAHIT 404
           P  +ST A  T
Sbjct: 651 PRRASTVATST 661
tr_hit_id Q4P085
Definition tr|Q4P085|Q4P085_USTMA Putative uncharacterized protein OS=Ustilago maydis
Align length 91
Score (bit) 36.6
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921045|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_H06.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4P085|Q4P085_USTMA Putative uncharacterized protein OS=Ustil...    37   0.71 
tr|Q5KMW3|Q5KMW3_CRYNE Expressed protein (Putative uncharacteriz...    36   1.2  
tr|Q9SN71|Q9SN71_ARATH Putative uncharacterized protein F1P2.220...    35   2.1  
tr|Q5CD55|Q5CD55_9SAUR NADH-ubiquinone oxidoreductase chain 5 OS...    34   4.6  
tr|A4A8X0|A4A8X0_9GAMM Fic family protein OS=Congregibacter lito...    34   4.6  
tr|A7F9D7|A7F9D7_SCLS1 Predicted protein OS=Sclerotinia scleroti...    34   4.6  
tr|A3HUQ8|A3HUQ8_9SPHI Probable cytochrome-c oxidase transmembra...    33   6.0  
tr|Q5Z4A3|Q5Z4A3_ORYSJ Resistance protein-like OS=Oryza sativa s...    33   6.0  
tr|B8B135|B8B135_ORYSI Putative uncharacterized protein OS=Oryza...    33   6.0  
tr|A3BB47|A3BB47_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.0  

>tr|Q4P085|Q4P085_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM06478.1 PE=4 SV=1
          Length = 662

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
 Frame = +1

Query: 208 LLQTIQCSFILVSHPPISGWSLQSNPAISTYYTQLISVCQKLHMQMLASSS-ESKSQHLH 384
           L+QT+   F  +   PI GW+  S P I T Y+Q+IS+   ++  +  SS+ +S +  L+
Sbjct: 378 LIQTMDDLFARLVQRPIPGWTPASGPLIIT-YSQVISI---IYSALYDSSTWDSLATALY 433

Query: 385 QLQLTSHDLECMYIT----DQWKRNTSRMTE 465
           +L   +  L   Y+     D W+ + SR T+
Sbjct: 434 ELLQGNSSLMSRYVDSWEYDPWQPSVSRATQ 464


>tr|Q5KMW3|Q5KMW3_CRYNE Expressed protein (Putative uncharacterized
           protein) OS=Cryptococcus neoformans GN=CNB00290 PE=4
           SV=1
          Length = 467

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +3

Query: 201 CSIITNYTMLIYLGISSTNFWMVPPEQSRNFHLLHAIDISVPKTPYADASIVIRIKIPTS 380
           CS +   T+   L  SST F    PE  R+ H+ HA D  V  T  ++         PTS
Sbjct: 53  CSYLPPSTLFSCLLTSSTFFHSSAPELYRSLHIKHARDCFVGATRQSNGFYTSSSASPTS 112

Query: 381 SSTAAHIT*P 410
           SS+++  T P
Sbjct: 113 SSSSSTTTRP 122


>tr|Q9SN71|Q9SN71_ARATH Putative uncharacterized protein F1P2.220
           (At3g47670/F1P2_220) OS=Arabidopsis thaliana GN=F1P2.220
           PE=2 SV=1
          Length = 240

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +1

Query: 97  SEVPNFIQYEHHSSSFFPLSFNSDTILSLGKNHASVLLLQTIQCSFILVSH-----PPIS 261
           S+  N I + HHS    P SF+  T+++ G   + +L+L  +  +    +H     PPIS
Sbjct: 14  SDQENQIHHHHHSPLPKPSSFSRKTLIATGSVVSLLLILSVVALTAGAFTHSPPHHPPIS 73

Query: 262 GWSLQSNPAISTY 300
             SL+S  +++ Y
Sbjct: 74  SASLKSLCSVTRY 86


>tr|Q5CD55|Q5CD55_9SAUR NADH-ubiquinone oxidoreductase chain 5
           OS=Pogona vitticeps GN=ND5 PE=3 SV=1
          Length = 597

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +1

Query: 91  IKSEVPNFIQYEHHS---SSFFPLSFNSDTILSLGKNHASVLLLQTIQCSFILVSHPPIS 261
           I S +P+ +  ++ +   S+ FP+S   D  L++  NH S LLL  +   F+  S    +
Sbjct: 41  ITSLIPSTLMLKYQAQPLSTLFPISTKPDMCLTITLNHFSALLLPVV--LFVAWSIMEFA 98

Query: 262 GWSLQSNPAISTYYTQLI 315
            W +   P   T+ + L+
Sbjct: 99  TWYISPTPLTKTFTSALL 116


>tr|A4A8X0|A4A8X0_9GAMM Fic family protein OS=Congregibacter
           litoralis KT71 GN=KT71_04365 PE=4 SV=1
          Length = 369

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 173 FFHWEKTTPVFYYYKLYNAHLSWYLIHQFLDGPSR 277
           FFHW +T+P+    ++  AHL +  +H F DG  R
Sbjct: 178 FFHWFETSPITDLAQVAIAHLYFVTLHPFADGNGR 212


>tr|A7F9D7|A7F9D7_SCLS1 Predicted protein OS=Sclerotinia
           sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
           GN=SS1G_14218 PE=4 SV=1
          Length = 590

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
 Frame = +1

Query: 106 PNFIQY--EHHSSSFFPLSFNSDTILSLGKNHASVLLLQTIQCSFILVSHPPISGWSLQS 279
           P F +Y  +H   S  P+ F S   L +      + L +     F +V H P +GW   S
Sbjct: 403 PTFFRYIRDHGGISLTPMEFRS--FLGVANERQELFLWEPFP-GFGIVKHIP-TGWP-PS 457

Query: 280 NPAISTYYTQLISVCQKLHMQMLAS--SSESKSQHLHQLQLTSHDLE 414
           + A ST++T LIS   + +M+ L +  S +S  + L++      DL+
Sbjct: 458 SSASSTFWTSLISEADEDNMETLDNFMSDQSVQEALYEYCGECRDLD 504


>tr|A3HUQ8|A3HUQ8_9SPHI Probable cytochrome-c oxidase transmembrane
           protein OS=Algoriphagus sp. PR1 GN=ALPR1_01525 PE=3 SV=1
          Length = 204

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +2

Query: 86  EKLNQKSPISFNMNTILLVFFRFLSIATRFFHWEKTT 196
           E LNQK P+SF ++T+L++   + +   R+++ E+ T
Sbjct: 51  EGLNQKVPVSFVVSTVLIILSGYTATKMRYYYQEENT 87


>tr|Q5Z4A3|Q5Z4A3_ORYSJ Resistance protein-like OS=Oryza sativa
           subsp. japonica GN=P0734C01.20 PE=4 SV=1
          Length = 1218

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 204 SIITNYTMLIYLGISSTNFWMVPPEQSRNFHLLHAIDISVPKTPYADASIVIRIKI 371
           +I  N  +L YL +  TN   +P E + N H L  +DI   K P  +  +V+ +K+
Sbjct: 753 AICNNIALLKYLSLRRTNITHLPSEIN-NLHDLEILDIRQTKVPEKETKLVLLLKL 807


>tr|B8B135|B8B135_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22720 PE=4 SV=1
          Length = 1403

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 204 SIITNYTMLIYLGISSTNFWMVPPEQSRNFHLLHAIDISVPKTPYADASIVIRIKI 371
           +I  N  +L YL +  TN   +P E + N H L  +DI   K P  +  +V+ +K+
Sbjct: 805 AICNNIALLKYLSLRRTNITHLPSEIN-NLHDLEILDIRQTKVPEKETKLVLLLKL 859


>tr|A3BB47|A3BB47_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_020269 PE=4 SV=1
          Length = 1344

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 204 SIITNYTMLIYLGISSTNFWMVPPEQSRNFHLLHAIDISVPKTPYADASIVIRIKI 371
           +I  N  +L YL +  TN   +P E + N H L  +DI   K P  +  +V+ +K+
Sbjct: 753 AICNNIALLKYLSLRRTNITHLPSEIN-NLHDLEILDIRQTKVPEKETKLVLLLKL 807