BP921046
Clone id YMU001_000144_H07
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000144_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGGAACCCCAAGCAGTTCTATATGCAGATCCGTATCCCTTAGAAGTCTGAAGGTGGCACT
AGCCTACAACGAAGCCATAGGAAGCAATTCATTGCAACTGCAAGGAATACCTTTGCTGCA
GAAAACTTTCCTTGCAGCGCTTGCAATACACATTGATGATCTATTAAATGTCCAGCTACC
TGGAGGTGCAACAAGCACACTTGCAACAGATCTTCTCAACTACTTGAGAAGCTTTCAAAG
TGGTCGTCATTGGACACCTATAACTAACCCTGCTTTACTTGCATTCTACTTGCAATGGTA
CAATATCCCTTGCCCTGCTCGACTCTGTGACGCTTTCAAGCAATTTGCAAGCTTTCTCGC
TGTGTGTCCTGTAAATGCTGATTGCTCTTTCAGCTTACCTTGGGTAGCCTTACTG
■■Homology search results ■■ -
sp_hit_id Q07878
Definition sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae
Align length 45
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921046|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_H07.
(415 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protei... 30 3.8
sp|P73942|SYP_SYNY3 Prolyl-tRNA synthetase OS=Synechocystis sp. ... 30 4.9
sp|Q68CJ6|CH080_HUMAN Uncharacterized protein C8orf80 OS=Homo sa... 30 4.9
sp|Q662I5|MNME_BORGA tRNA modification GTPase mnmE OS=Borrelia g... 30 4.9
sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo s... 29 6.4
sp|O42794|KAPR_COLTR cAMP-dependent protein kinase regulatory su... 29 8.4
sp|Q61003|CD6_MOUSE T-cell differentiation antigen CD6 OS=Mus mu... 29 8.4
sp|A5WUN7|CAMP1_DANRE Calmodulin-regulated spectrin-associated p... 29 8.4

>sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protein 13
OS=Saccharomyces cerevisiae GN=VPS13 PE=1 SV=1
Length = 3144

Score = 30.0 bits (66), Expect = 3.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2

Query: 147 IASAARKVFCSKGIPCSCNELLPMASL*ASATFRLLRDTDLHIEL 13
I +AR + IP S E LP+AS + ++L+ DT+L ++
Sbjct: 1839 ITLSARSIAMLSHIPASLTEELPLASRVSQKPYQLVNDTELDFDV 1883


>sp|P73942|SYP_SYNY3 Prolyl-tRNA synthetase OS=Synechocystis sp.
(strain PCC 6803) GN=proS PE=3 SV=2
Length = 603

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2

Query: 390 KEQSAFTGHTARKLANCLKASQSRAGQGILYHCK*NASKAGLVI 259
K+QSA T K+ CL S + +LY N+ KA LV+
Sbjct: 255 KKQSAPNTATIAKMCQCLDCDASNVVKNVLYQAVYNSGKAVLVL 298


>sp|Q68CJ6|CH080_HUMAN Uncharacterized protein C8orf80 OS=Homo
sapiens GN=C8orf80 PE=1 SV=2
Length = 829

Score = 29.6 bits (65), Expect = 4.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Frame = -1

Query: 382 ISIYRTHSEKACKLLESVTESSRARDIVPLQVECK*SRVSYRCPMTTTLKAS-------Q 224
+S+ R +E+ +LLE A PLQ + +R SYRC + L S Q
Sbjct: 488 MSVLRRFAEEKVELLEKAIAQCFACMEQPLQEGVRTARTSYRCILRACLVRSKGNQGFHQ 547

Query: 223 VVEKICCKCACCTSR 179
++ +C K SR
Sbjct: 548 TLKAVCLKNGIYASR 562


>sp|Q662I5|MNME_BORGA tRNA modification GTPase mnmE OS=Borrelia
garinii GN=mnmE PE=3 SV=1
Length = 464

Score = 29.6 bits (65), Expect = 4.9
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3

Query: 285 STCNGTISLALLD-SVTLSSNLQAFSLCVL*MLIALSAYL 401
+T N T SLA+ S L +NL A C+L +L A+SAYL
Sbjct: 144 ATTNKTYSLAVTPLSGALFANLDAIQRCLLNILSAVSAYL 183


>sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo
sapiens GN=CD6 PE=1 SV=2
Length = 668

Score = 29.3 bits (64), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2

Query: 177 SWTFNRSSMCIASAARKVFCS 115
SW FN S++C S A +V CS
Sbjct: 341 SWRFNNSNLCSQSLAARVLCS 361


>sp|O42794|KAPR_COLTR cAMP-dependent protein kinase regulatory
subunit OS=Colletotrichum trifolii GN=PKAR PE=3 SV=1
Length = 404

Score = 28.9 bits (63), Expect = 8.4
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1

Query: 88 FIATARNTFAAENFPCSACNTH**SIKCPATWRCNKHTCNRSSQLLEKLSKWSSLDTYN* 267
F+A A ++E FPC + H + K P W+ RS+ L+ +LS+ + T
Sbjct: 262 FLAAACTRTSSEKFPCCRHSHHMSAQKSPTRWKL------RSTPLVRRLSRRETRVTR-- 313

Query: 268 PCFTC 282
FTC
Sbjct: 314 --FTC 316


>sp|Q61003|CD6_MOUSE T-cell differentiation antigen CD6 OS=Mus
musculus GN=Cd6 PE=2 SV=1
Length = 665

Score = 28.9 bits (63), Expect = 8.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2

Query: 177 SWTFNRSSMCIASAARKVFCS 115
SW FN S++C S A +V CS
Sbjct: 340 SWRFNNSNLCSQSRAARVVCS 360


>sp|A5WUN7|CAMP1_DANRE Calmodulin-regulated spectrin-associated
protein 1 OS=Danio rerio GN=camsap1 PE=3 SV=1
Length = 1558

Score = 28.9 bits (63), Expect = 8.4
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2

Query: 68 NEAIGSNSLQLQGIPLLQKTFXXXXXXXXXXXXNVQLPGGATSTLATDLLN 220
NEAIGS Q+ + L Q+ N+Q P ATS LA D +N
Sbjct: 988 NEAIGSIQQQMMQLSLQQEMLMKQ---------NIQSPTSATSPLANDQIN 1029


tr_hit_id Q5W783
Definition tr|Q5W783|Q5W783_ORYSJ Putative uncharacterized protein OJ1537_B05.6 OS=Oryza sativa subsp. japonica
Align length 99
Score (bit) 38.5
E-value 0.17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921046|Adiantum capillus-veneris mRNA, clone:
YMU001_000144_H07.
(415 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5W783|Q5W783_ORYSJ Putative uncharacterized protein OJ1537_B... 39 0.17
tr|Q0DIX4|Q0DIX4_ORYSJ Os05g0354300 protein (Fragment) OS=Oryza ... 39 0.17
tr|B8AX27|B8AX27_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.17
tr|A3B311|A3B311_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.17
tr|Q9FFF9|Q9FFF9_ARATH Meiotic check point regulator-like protei... 37 0.49
tr|A7Q3J7|A7Q3J7_VITVI Chromosome chr13 scaffold_48, whole genom... 36 1.1
tr|A7S589|A7S589_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 1.9
tr|A3XDK3|A3XDK3_9RHOB Methyl-accepting chemotaxis protein McpI ... 33 9.2

>tr|Q5W783|Q5W783_ORYSJ Putative uncharacterized protein
OJ1537_B05.6 OS=Oryza sativa subsp. japonica
GN=OJ1537_B05.6 PE=4 SV=1
Length = 829

Score = 38.5 bits (88), Expect = 0.17
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +2

Query: 50 KVALAYNEAIGSNSLQLQGIPLLQKTFXXXXXXXXXXXXNVQLPGGATSTLATDLLNYLR 229
KVA AYNEA+ + GI +Q TF +LP L +NYL
Sbjct: 698 KVASAYNEALIDGRITTGGI--IQSTFLESLMKRIEYIF-AELPN-----LHDSFINYLN 749

Query: 230 SFQSGRHWTPITNPA-LLAFYLQWYNIPCPARLCDAFKQ 343
+ W N A LL++YLQWY+IP P + A ++
Sbjct: 750 KGK----WPDAQNEAVLLSWYLQWYSIPPPHIVSSAIEK 784


>tr|Q0DIX4|Q0DIX4_ORYSJ Os05g0354300 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os05g0354300 PE=4 SV=1
Length = 938

Score = 38.5 bits (88), Expect = 0.17
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +2

Query: 50 KVALAYNEAIGSNSLQLQGIPLLQKTFXXXXXXXXXXXXNVQLPGGATSTLATDLLNYLR 229
KVA AYNEA+ + GI +Q TF +LP L +NYL
Sbjct: 807 KVASAYNEALIDGRITTGGI--IQSTFLESLMKRIEYIF-AELPN-----LHDSFINYLN 858

Query: 230 SFQSGRHWTPITNPA-LLAFYLQWYNIPCPARLCDAFKQ 343
+ W N A LL++YLQWY+IP P + A ++
Sbjct: 859 KGK----WPDAQNEAVLLSWYLQWYSIPPPHIVSSAIEK 893


>tr|B8AX27|B8AX27_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_19594 PE=4 SV=1
Length = 1799

Score = 38.5 bits (88), Expect = 0.17
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +2

Query: 50 KVALAYNEAIGSNSLQLQGIPLLQKTFXXXXXXXXXXXXNVQLPGGATSTLATDLLNYLR 229
KVA AYNEA+ + GI +Q TF ++ L +NYL
Sbjct: 1668 KVASAYNEALIDGRITTGGI--IQSTFLESLMK------RIEYIFAGLPNLHDSFINYLN 1719

Query: 230 SFQSGRHWTPITNPA-LLAFYLQWYNIPCPARLCDAFKQ 343
+ W N A LL++YLQWY+IP P + A ++
Sbjct: 1720 KGK----WPDAQNEAVLLSWYLQWYSIPPPHIVSSAIEK 1754


>tr|A3B311|A3B311_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_017433 PE=4 SV=1
Length = 1702

Score = 38.5 bits (88), Expect = 0.17
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +2

Query: 50 KVALAYNEAIGSNSLQLQGIPLLQKTFXXXXXXXXXXXXNVQLPGGATSTLATDLLNYLR 229
KVA AYNEA+ + GI +Q TF +LP L +NYL
Sbjct: 1571 KVASAYNEALIDGRITTGGI--IQSTFLESLMKRIEYIF-AELPN-----LHDSFINYLN 1622

Query: 230 SFQSGRHWTPITNPA-LLAFYLQWYNIPCPARLCDAFKQ 343
+ W N A LL++YLQWY+IP P + A ++
Sbjct: 1623 KGK----WPDAQNEAVLLSWYLQWYSIPPPHIVSSAIEK 1657


>tr|Q9FFF9|Q9FFF9_ARATH Meiotic check point regulator-like protein
OS=Arabidopsis thaliana GN=At5g05560 PE=4 SV=1
Length = 1678

Score = 37.0 bits (84), Expect = 0.49
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Frame = +2

Query: 50 KVALAYNEAIGSNSLQLQGIPLLQKTFXXXXXXXXXXXXNVQLPGGATSTLATDLLNYLR 229
+VALAYNEA+ + L G +Q F N +T+L LR
Sbjct: 1548 QVALAYNEAVSTGRLASSG-GFVQSIFLASLRKRCEEVLNC----------STELKINLR 1596

Query: 230 SFQSGRHWTPITNPAL------LAFYLQWYNIPCPARLCDAFKQFAS 352
++ + W N L L++YL+W+N+P P+ + A ++ S
Sbjct: 1597 NYLTSEAWPYDKNSKLQKDIIILSWYLKWFNVPSPSIIKAAVEKIKS 1643


>tr|A7Q3J7|A7Q3J7_VITVI Chromosome chr13 scaffold_48, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029314001
PE=4 SV=1
Length = 1796

Score = 35.8 bits (81), Expect = 1.1
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Frame = +2

Query: 50 KVALAYNEAIGSNSLQLQGIPLLQKTFXXXXXXXXXXXXNVQLPGGATSTLATDLLNYLR 229
K+ALAYNEA+ S L ++Q F N PG L D NYL
Sbjct: 1666 KLALAYNEALLSGRLTASKGGIVQPVFIGSLMRRVEGLLNYS-PG-----LKNDFYNYLN 1719

Query: 230 -------SFQSGRHWTPITNPALLAFYLQWYNIPCPA 319
Q G+ + LL++YLQW+ +P P+
Sbjct: 1720 LGKWPSEESQGGK------DSILLSWYLQWFCVPAPS 1750


>tr|A7S589|A7S589_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g105043 PE=4 SV=1
Length = 428

Score = 35.0 bits (79), Expect = 1.9
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Frame = +1

Query: 64 LQRSHRKQFIATARNTFAAENFPCS---ACNTH**SIKCPATWRCNKH--TCNRSSQLLE 228
L R H QF + + FPCS C+TH C +C+ H C+ Q
Sbjct: 237 LDRCHTHQFPCSLLDQCHTHQFPCSLLDQCHTH--QFPCSLLDQCHTHQFPCSLLDQCHT 294

Query: 229 KLSKWSSLDTYN*PCFTCILLAMVQ-YPLPCSTL*R 333
S LD + F C LL +P PCS L R
Sbjct: 295 HQFPCSLLDQCHAHQFPCSLLDQCHTHPFPCSLLDR 330


>tr|A3XDK3|A3XDK3_9RHOB Methyl-accepting chemotaxis protein McpI
OS=Roseobacter sp. MED193 GN=MED193_13128 PE=4 SV=1
Length = 526

Score = 32.7 bits (73), Expect = 9.2
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +2

Query: 179 PGGATSTLATDLLNYLRSFQSGRHWTPITNPALLAFYL----QWYNIPCPARLCDAFKQF 346
P GA A+ +L RS Q W + PA+ AFYL W+ C + + F
Sbjct: 6 PTGAKPEAASSILTNERSIQQITSWLLVPGPAVAAFYLNGNPNWWVFACLSLVLGVFAYV 65

Query: 347 ASFLAVCPVNADCSFSLPWVA 409
+ A+ P D S +VA
Sbjct: 66 SK--ALPPSTRDYLLSFCFVA 84