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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921065
Clone id YMU001_000145_B10
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCCTCGAGTTAATGATGATGATGATGGTGGGATCGTGTCGGCCATAATTTCCCGTGTGTA
GACTAGAGCCTACAACACATCATTCATATGCAAAAAGAAAAGGTGACAAGTGAGCACGTT
TTAAAAAACTGTTGATGTCATGCCTAAGTGGTCCGCAACCGATAAGAAAGACTTTGGGAG
CATTCATGGAGCCCTAAGAAAAAACATGGAAGACATTTTTGCATTCATCTTGTGGCTTAA
TGTTGTATGCTATGAGGCAAACCAAGATAATTTTCTTTGGTCCAAGCGAAGCTCCATCGC
TCCCTCCTCTGCTCCATAGAGCTCCTTGACCACAAGATCCAACTTATTCAAACTTAACCC
AATCAACTCCCTCTTGCTCCTGCTTGTGCGATTACGCTCCCTCCTAAATATCGATCCAGA
GGCCATATGTGAACCCCTGGTCGCCCTTGCATTTGCCTTCTCCCTCCCTCTCTCACTACC
ATACTATTGCGTGCTGAATAGCTCCTGGTATGTCCAAGCTCCATGCATCTGAT
■■Homology search results ■■ -
sp_hit_id Q6FR39
Definition sp|Q6FR39|TRXB_CANGA Thioredoxin reductase OS=Candida glabrata
Align length 32
Score (bit) 30.4
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921065|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_B10.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FR39|TRXB_CANGA Thioredoxin reductase OS=Candida glabrata G...    30   5.6  
sp|Q9HB96|FANCE_HUMAN Fanconi anemia group E protein OS=Homo sap...    30   5.6  
sp|Q66I51|T55BB_DANRE Transmembrane protein 55B-B OS=Danio rerio...    30   9.5  

>sp|Q6FR39|TRXB_CANGA Thioredoxin reductase OS=Candida glabrata
           GN=TRR1 PE=3 SV=1
          Length = 319

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 187 MNAPKVFLIGCGPLRHDINSFLKRAHLSPFLF 92
           MN  KV +IG GP  H    +L RA + P ++
Sbjct: 1   MNHKKVVIIGSGPAAHTAAIYLARAEIKPTMY 32


>sp|Q9HB96|FANCE_HUMAN Fanconi anemia group E protein OS=Homo
           sapiens GN=FANCE PE=1 SV=1
          Length = 536

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 129 LLMSCLSGPQPIRKTLGAFMEP*EKTWKTFLHSSCGLMLYAMRQTKIIFFGPSEAPSLPP 308
           LL +  +GP+  R+ LG       + W+ F     G +L A+ + + +  GP     L P
Sbjct: 29  LLQALQAGPEGARRGLGVLRALGSRGWEPF---DWGRLLEALCREEPVVQGPDGRLELKP 85

Query: 309 LLHRAP 326
           LL R P
Sbjct: 86  LLLRLP 91


>sp|Q66I51|T55BB_DANRE Transmembrane protein 55B-B OS=Danio rerio
           GN=tmem55bb PE=2 SV=2
          Length = 262

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 294 PSLPPLLHRAP*PQDPTYSNLTQSTPSCSC 383
           PS PP+L  AP P  P  S  + S P  SC
Sbjct: 40  PSAPPMLGEAPPPYSPLGSPESSSAPVISC 69
tr_hit_id B4LKV8
Definition tr|B4LKV8|B4LKV8_DROVI GJ20678 OS=Drosophila virilis
Align length 63
Score (bit) 34.3
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921065|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_B10.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4LKV8|B4LKV8_DROVI GJ20678 OS=Drosophila virilis GN=GJ20678 ...    34   4.1  
tr|B4J5H0|B4J5H0_DROGR GH20852 OS=Drosophila grimshawi GN=GH2085...    34   4.1  
tr|B3MH40|B3MH40_DROAN GF12284 OS=Drosophila ananassae GN=GF1228...    34   5.4  

>tr|B4LKV8|B4LKV8_DROVI GJ20678 OS=Drosophila virilis GN=GJ20678
           PE=4 SV=1
          Length = 1220

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 277 KKIILVCLIAYNIKPQDECKNVFHVFS*GSMNAPKVFL---IGCGPLRHDINSFLKRAHL 107
           +++++ CL+ Y + P++  K ++H+      NA K F+         RH ++ ++K  H 
Sbjct: 450 ERLLITCLVPYKLAPEERMKKLYHLLGDLDANATKAFVELQKNQMKSRHTVSDWIKLHHS 509

Query: 106 SPF 98
             F
Sbjct: 510 KEF 512


>tr|B4J5H0|B4J5H0_DROGR GH20852 OS=Drosophila grimshawi GN=GH20852
           PE=4 SV=1
          Length = 1221

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 277 KKIILVCLIAYNIKPQDECKNVFHVFS*GSMNAPKVFL---IGCGPLRHDINSFLKRAHL 107
           +++++ CL+ Y + P++  K ++H+      NA K F+         RH ++ ++K  H 
Sbjct: 450 ERLLITCLVPYKLAPEERMKKLYHLLGDLDTNATKAFVELQKNQMKSRHTVSDWIKLHHS 509

Query: 106 SPF 98
             F
Sbjct: 510 KEF 512


>tr|B3MH40|B3MH40_DROAN GF12284 OS=Drosophila ananassae GN=GF12284
           PE=4 SV=1
          Length = 1217

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 17/71 (23%), Positives = 37/71 (52%)
 Frame = -2

Query: 376 QEGVDWVKFE*VGSCGQGALWSRGGSDGASLGPKKIILVCLIAYNIKPQDECKNVFHVFS 197
           ++ VDW+K + +    +  L  R       L  +++++ CL+ Y + P++  K ++H+ +
Sbjct: 424 KKSVDWIKNKILHGYYKVGLEDR-------LLVERLLITCLVPYKLPPEERMKKLYHLLA 476

Query: 196 *GSMNAPKVFL 164
               NA K F+
Sbjct: 477 DLDANATKAFV 487