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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921067
Clone id YMU001_000145_B12
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTAGTCCAGATGCAGTTAAATATGATAAGTCTCACGTCAATTTGCTTGCGTACATGGA
CACAGCATCCTTTCTGTGATGTATGCATCTTGGGCCCGTCCTGCACTTATTTGATTATTA
CAAAATTCCAGAGTGGTGAACCATTTTGCTGACCACAATCAACTAGCTAGCATTCGCTCA
CTCTCCAGTAAAAGAGCCAGACCATAGAGCTCAAATGAAGCCAATACTACGACCTTTTGC
CTCTACATAGTATTCAAGCATGCAAGAACGATTCTAGAAGCCTCATCCATAAGTGCATGC
AAGTGCTAGTGCATGGGAAGGAAGAATAAGGAGTGCACAAGTAGAAACTGGGACTCACCA
TTGGTGGTGGCTCTCCTTTGCACCACATCCAGCCTTCAAATGCCACAATGAGAAAGAGCG
TTCACAAGACGTAGGGGAGCGGGGAGCCCTGTGGAAGTTGAAATGGCCCTAACACTGCTT
TCACGTCAAACCTGCTCATTGCTTGTGTGCACATAC
■■Homology search results ■■ -
sp_hit_id P35654
Definition sp|P35654|HRPI_ERWAM Harpin secretion protein hrpI OS=Erwinia amylovora
Align length 27
Score (bit) 29.6
E-value 8.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921067|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_B12.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35654|HRPI_ERWAM Harpin secretion protein hrpI OS=Erwinia am...    30   8.7  

>sp|P35654|HRPI_ERWAM Harpin secretion protein hrpI OS=Erwinia
           amylovora GN=hrpI PE=3 SV=2
          Length = 715

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 293 VHASASAWEGRIRSAQVETGTHHWWWL 373
           +H +    +G+I+  Q E   HHW WL
Sbjct: 446 IHLADGESDGQIQPGQAERDEHHWCWL 472
tr_hit_id B0JGP5
Definition tr|B0JGP5|B0JGP5_MICAN DMT superfamily permease protein OS=Microcystis aeruginosa (strain NIES-843)
Align length 83
Score (bit) 33.1
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921067|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_B12.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0JGP5|B0JGP5_MICAN DMT superfamily permease protein OS=Micro...    33   8.3  

>tr|B0JGP5|B0JGP5_MICAN DMT superfamily permease protein
           OS=Microcystis aeruginosa (strain NIES-843) GN=MAE_54890
           PE=4 SV=1
          Length = 193

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
 Frame = -3

Query: 418 LFLIVAFEGWMWC----------KGEPPPMVSPSFYLCTPYSSFPCTSTCMHLWMRLLES 269
           L +IVAF   +W           K   P   S S Y CT   SFP    C   W   L +
Sbjct: 62  LMIIVAF---LWALTTSFDKIGAKNSSPLFFSASLYFCTALMSFPIVIVCSPNWFSKLRA 118

Query: 268 FLHA*ILCRG-KRS*YWLHLSSM 203
            L   IL  G K    W H+ ++
Sbjct: 119 NLAKLILLGGLKAVDMWCHVMAI 141