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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921068
Clone id YMU001_000145_C01
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGGGCATCAAGAAAACCATCAAGCAATCAAGCGCTTAAGCAATCCCCATAATCAAGCCAT
CACCCAACCTCCTAGCTATCTCCTTGAGTGAAACTCTCTCAATTTCAGCCCAACACATCT
TGAGCTTGCTACTTAACGTCTCAAGCCTTTTATCTCCTCACTTGTAATACTCATATACTC
TATGTAACCTTCTTTCATCAATAAAGATGCATTGTTGGTGGCTTATAAACGGTGTTGTGT
ACTTCTACTCATCTTCTACTTCATCAAGTTGGCTACAAGACCACAAAGTCTTGAGGTGTG
CTTCACTTCTTTGGCTTGAGCTTGTGTGGGTCTTTGTGTGTTGGTTGTCTCTCTTATCTC
TTTCCTCCATTGTTTGACTGCTTTTTAAACTAATTTCTTAGATGAATAATCCCAATGGTG
TAACCTTTCAAGCCTTTCACTTTGTGCAAAATATTAGGATTAACGTTTGTATTAGCTGTA
AAATCCACTTCCAGCAGAGAATTGTGTTACTCTTTGGGCCGGAA
■■Homology search results ■■ -
sp_hit_id Q6RSS2
Definition sp|Q6RSS2|L_PIRVV RNA-directed RNA polymerase OS=Pirital virus (isolate Rat/Venezuela/VAV-488/1995)
Align length 54
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921068|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C01.
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6RSS2|L_PIRVV RNA-directed RNA polymerase OS=Pirital virus (...    32   1.8  
sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CE...    31   3.1  
sp|Q9P1Z9|K1529_HUMAN Uncharacterized protein KIAA1529 OS=Homo s...    31   4.1  
sp|Q31PM2|HEM3_SYNE7 Porphobilinogen deaminase OS=Synechococcus ...    30   7.0  
sp|Q9H0R5|GBP3_HUMAN Guanylate-binding protein 3 OS=Homo sapiens...    30   9.1  

>sp|Q6RSS2|L_PIRVV RNA-directed RNA polymerase OS=Pirital virus
            (isolate Rat/Venezuela/VAV-488/1995) GN=L PE=3 SV=1
          Length = 2210

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 409  LFI*EISLKSSQTMEERDKRDNQHTKTHTSSSQRSEAHLKTLWSCSQLDEVEDE 248
            L + EI +K S+T E   K +    +   S  + +EAHLK LWS    D++  E
Sbjct: 901  LMLSEIEVKVSKTFEGMSKDELNRKQ---SKEKGAEAHLKRLWSKEVRDKISSE 951


>sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CENPF
           PE=1 SV=2
          Length = 3210

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/101 (22%), Positives = 49/101 (48%)
 Frame = -2

Query: 397 EISLKSSQTMEERDKRDNQHTKTHTSSSQRSEAHLKTLWSCSQLDEVEDE*KYTTPFISH 218
           +  L S +   ++ K+  ++ KT  ++ +R    L  +  C  L++ + +       ISH
Sbjct: 38  QFQLDSLEAALQKQKQKVENEKTEGTNLKRENQRLMEI--CESLEKTKQK-------ISH 88

Query: 217 QQCIFIDERRLHRVYEYYK*GDKRLETLSSKLKMCWAEIER 95
           +  + + E +++        G K++E L  +LK C +E+ER
Sbjct: 89  E--LQVKESQVNFQEGQLNSGKKQIEKLEQELKRCKSELER 127


>sp|Q9P1Z9|K1529_HUMAN Uncharacterized protein KIAA1529 OS=Homo
           sapiens GN=KIAA1529 PE=1 SV=2
          Length = 1646

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 30/96 (31%), Positives = 39/96 (40%)
 Frame = -2

Query: 364 ERDKRDNQHTKTHTSSSQRSEAHLKTLWSCSQLDEVEDE*KYTTPFISHQQCIFIDERRL 185
           E +KR  QH + H+  SQ  EAHL  L    QL +  D  K T  F             L
Sbjct: 681 ELEKRMEQHRQKHSLESQVQEAHLDRL--LDQLRQQSD--KETLAF------------HL 724

Query: 184 HRVYEYYK*GDKRLETLSSKLKMCWAEIERVSLKEI 77
            +V +Y K    R E   + L     E   + LKE+
Sbjct: 725 EKVKDYLKNMKSRYECFHTLLTKEVMEYPAIMLKEL 760


>sp|Q31PM2|HEM3_SYNE7 Porphobilinogen deaminase OS=Synechococcus
           elongatus (strain PCC 7942) GN=hemC PE=3 SV=1
          Length = 320

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
 Frame = -2

Query: 316 SQRSE-AHLKTLWSCSQLDEVEDE*KYTTPFISHQQCIFIDERRLHRVYEYYK*GDKRLE 140
           S++S+ A ++T W   +L  +  + ++    +S Q  I +D           K GDK L 
Sbjct: 13  SRKSQLALVQTHWVQGELQRLYPDRQFDVQTMSTQGDIILD-------VALAKIGDKGLF 65

Query: 139 TLSSKLKMCWAEIERV--SLKEIARRLGDGLIMG 44
           T   ++ M   E++    SLK++  RL +GLI+G
Sbjct: 66  TKELEVAMLAGEVDFAVHSLKDLPTRLPEGLILG 99


>sp|Q9H0R5|GBP3_HUMAN Guanylate-binding protein 3 OS=Homo sapiens
           GN=GBP3 PE=2 SV=3
          Length = 595

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 397 EISLKSSQTMEERDKRDNQHTKTHTSSSQRSEAHL 293
           E+ +K  Q MEE++K   +H K  T   +R  A L
Sbjct: 506 EMQIKYQQMMEEKEKSYQEHVKQLTEKMERERAQL 540
tr_hit_id B6PGC0
Definition tr|B6PGC0|B6PGC0_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae
Align length 52
Score (bit) 34.7
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921068|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C01.
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PGC0|B6PGC0_BRAFL Putative uncharacterized protein (Fragmen...    35   3.0  
tr|Q8VGQ5|Q8VGQ5_MOUSE Olfactory receptor MOR184-6 OS=Mus muscul...    34   3.9  
tr|Q7TS49|Q7TS49_MOUSE Olfactory receptor Olfr178 OS=Mus musculu...    34   3.9  
tr|A1L0W9|A1L0W9_MOUSE Olfr178 protein (Fragment) OS=Mus musculu...    34   3.9  
tr|B3L5L5|B3L5L5_PLAKH Putative uncharacterized protein OS=Plasm...    34   3.9  
tr|B6PGB9|B6PGB9_BRAFL Putative uncharacterized protein (Fragmen...    33   6.6  
tr|Q2RND8|Q2RND8_RHORT Chemotaxis sensory transducer OS=Rhodospi...    33   8.6  
tr|Q3E9Z5|Q3E9Z5_ARATH Uncharacterized protein At4g18335.1 (Puta...    33   8.6  
tr|A0MF79|A0MF79_ARATH Putative uncharacterized protein (Fragmen...    33   8.6  

>tr|B6PGC0|B6PGC0_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_249598 PE=4 SV=1
          Length = 96

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 115 TS*ACYL---TSQAFYLLTCNTHILYVTFFHQ*RCIVGGL*TVLCTSTHLLL 261
           TS A Y+   TS AFY+L C +H LY+       C   GL  +LCTS  L +
Sbjct: 47  TSHALYILLCTSHAFYILLCTSHGLYILL-----CTSHGLYILLCTSHGLYM 93


>tr|Q8VGQ5|Q8VGQ5_MOUSE Olfactory receptor MOR184-6 OS=Mus musculus
           GN=Olfr178 PE=2 SV=1
          Length = 319

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 146 PFISSLVILIYSM*PSFINKDALLVAYKRCCVLLLIFYFIKLATRPQSLEVC 301
           PFI+ L+I I+SM   F+    +LV+Y   C+LL IF       R ++L  C
Sbjct: 194 PFINELMIYIFSMPIQFLTITTVLVSY--FCILLTIFKMKSKDGRGKALSTC 243


>tr|Q7TS49|Q7TS49_MOUSE Olfactory receptor Olfr178 OS=Mus musculus
           GN=Olfr178 PE=2 SV=1
          Length = 319

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 146 PFISSLVILIYSM*PSFINKDALLVAYKRCCVLLLIFYFIKLATRPQSLEVC 301
           PFI+ L+I I+SM   F+    +LV+Y   C+LL IF       R ++L  C
Sbjct: 194 PFINELMIYIFSMPIQFLTITTVLVSY--FCILLTIFKMKSKDGRGKALSTC 243


>tr|A1L0W9|A1L0W9_MOUSE Olfr178 protein (Fragment) OS=Mus musculus
           GN=Olfr178 PE=2 SV=1
          Length = 318

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 146 PFISSLVILIYSM*PSFINKDALLVAYKRCCVLLLIFYFIKLATRPQSLEVC 301
           PFI+ L+I I+SM   F+    +LV+Y   C+LL IF       R ++L  C
Sbjct: 193 PFINELMIYIFSMPIQFLTITTVLVSY--FCILLTIFKMKSKDGRGKALSTC 242


>tr|B3L5L5|B3L5L5_PLAKH Putative uncharacterized protein OS=Plasmodium
            knowlesi (strain H) GN=PKH_093850 PE=4 SV=1
          Length = 2489

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
 Frame = -2

Query: 397  EISLKSSQTMEERDKRDNQHTKT-------HTSSSQRSEAHL-KTLWSCSQLDEVEDE*K 242
            E SL  S ++E ++K +N  T T        TS     E HL K      + + V    K
Sbjct: 736  EKSLTCSNSLERQEKYNNLRTITIRSDSVDETSEENPRERHLIKDAEKFREKNHVPSSLK 795

Query: 241  YTTPFISHQQCIFIDERRLHRVYEYYK*GDKRLETLSSKLKMCWAEIERVSLKEIARRLG 62
                  +H   +       +++ +YYK GDK++  L S+  +C   +  V   E+ ++ G
Sbjct: 796  LQDEIGTHDNSM-----EKYKMVQYYKPGDKKV--LGSRFCICEGRVHNVCYNEVEKKKG 848


>tr|B6PGB9|B6PGB9_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_249593 PE=4 SV=1
          Length = 106

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 115 TS*ACYL---TSQAFYLLTCNTHILYVTFFHQ*RCIVGGL*TVLCTSTHLLL 261
           TS A Y+   TS A Y+L C +H LY+       C   GL  +LCTS  L +
Sbjct: 32  TSHALYILLCTSHALYILLCTSHALYILL-----CTSHGLYILLCTSHALYI 78


>tr|Q2RND8|Q2RND8_RHORT Chemotaxis sensory transducer
           OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
           GN=Rru_A3563 PE=3 SV=1
          Length = 563

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 397 EISLKSSQTMEERDKRDNQHTKTHTSSSQRSEAHLKTLWSCSQLDEVEDE*KYTTPF 227
           E +L +++T ++ D+ D   TKT    S+ S+ HLK L S  + D   +   Y  PF
Sbjct: 71  EQTLAAARTPDQSDRADKMLTKTRVVLSEISKNHLKYLASKREADIYNEFVSYLQPF 127


>tr|Q3E9Z5|Q3E9Z5_ARATH Uncharacterized protein At4g18335.1
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At4g18335 PE=4 SV=1
          Length = 164

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -2

Query: 346 NQHTKTHTSSSQRSEAHLKTLWSCSQLDEVEDE*KYTTPFISHQQCIFIDERRL---HRV 176
           + + +T  SS+Q++EA+L    S  QL  +    K TTPFI +Q+    + RR    H+ 
Sbjct: 33  SSNQETRVSSTQKTEAYLNGYESPHQLVYI----KKTTPFILNQRLQRDNHRRRRYNHQY 88

Query: 175 YEYYK 161
           Y YY+
Sbjct: 89  YYYYR 93


>tr|A0MF79|A0MF79_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 165

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -2

Query: 346 NQHTKTHTSSSQRSEAHLKTLWSCSQLDEVEDE*KYTTPFISHQQCIFIDERRL---HRV 176
           + + +T  SS+Q++EA+L    S  QL  +    K TTPFI +Q+    + RR    H+ 
Sbjct: 33  SSNQETRVSSTQKTEAYLNGYESPHQLVYI----KKTTPFILNQRLQRDNHRRRRYNHQY 88

Query: 175 YEYYK 161
           Y YY+
Sbjct: 89  YYYYR 93