BP921069 |
Clone id |
YMU001_000145_C02 |
Library |
YMU01 |
Length |
361 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000145_C02. |
Accession |
BP921069 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2Contig2 |
Sequence |
AGCCACCACTGGGAAGTTGTTTCATTATGTATGCAAAGTGGCTGGGACACAAAAGCTCAT AAGAGCAAGCTTGTTAGGCGCCAGTGGGAAATGGGAAGCAGGCATTCATGCCAACTAAAT TGGCTTGCTTTAAGAAAGTTTAGACAGAGGGCTTCTGGACAAGGAAGCCGGAGACCTGCA CCTGCCTCTTAGCGTCAAAGCCCAGCACGCGGATGAAGGCTTCAGGATACTCCTTGGCGC ACTCTGCAATTTCACGCAGCACAGCAGCGGCATCTTGGCAGCCAAACATGGGCAGCTTCC ACATCACCCAGTACCGCCCATCGTAGTAGCCGATGCCGTGGAAGTGCTCTCGGTACACGC T |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40250 |
Definition |
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa |
Align length |
70 |
Score (bit) |
114.0 |
E-value |
2.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921069|Adiantum capillus-veneris mRNA, clone: YMU001_000145_C02. (361 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 114 2e-25 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 110 2e-24 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 110 3e-24 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 108 6e-24 sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 107 1e-23 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 107 2e-23 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 107 2e-23 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 107 2e-23 sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 105 7e-23 sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 105 7e-23 sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 105 7e-23 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 105 9e-23 sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 105 9e-23 sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 105 9e-23 sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 105 9e-23 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 105 9e-23 sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 105 9e-23 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 105 9e-23 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 105 9e-23 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 104 1e-22 sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 104 1e-22 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 104 1e-22 sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 104 2e-22 sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha... 104 2e-22 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 103 2e-22 sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 103 3e-22 sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 102 6e-22 sp|P26574|RBS1_SOLTU Ribulose bisphosphate carboxylase small cha... 102 6e-22 sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 102 8e-22
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 114 bits (285), Expect = 2e-25 Identities = 49/70 (70%), Positives = 55/70 (78%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH H GYYDGRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD RQV Sbjct: 108 VYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQV 167
Query: 178 QVSGFLVQKP 149 Q F+V KP Sbjct: 168 QCISFIVAKP 177
>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1 Length = 180
Score = 110 bits (276), Expect = 2e-24 Identities = 47/71 (66%), Positives = 54/71 (76%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH + GYYDGRYW MWKLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQV Sbjct: 108 VYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQV 167
Query: 178 QVSGFLVQKPS 146 Q F+ KP+ Sbjct: 168 QCVSFIAYKPA 178
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 110 bits (274), Expect = 3e-24 Identities = 46/70 (65%), Positives = 54/70 (77%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH GYYDGRYW MWKLPMFGC D++ VL+E+ EC K YP AFIR++GFD KRQV Sbjct: 110 VYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQV 169
Query: 178 QVSGFLVQKP 149 Q+ F+ KP Sbjct: 170 QIISFIAYKP 179
>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2 Length = 180
Score = 108 bits (271), Expect = 6e-24 Identities = 46/70 (65%), Positives = 54/70 (77%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQV Sbjct: 106 VYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQV 165
Query: 178 QVSGFLVQKP 149 Q F+ KP Sbjct: 166 QCISFIAYKP 175
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1 Length = 82
Score = 107 bits (268), Expect = 1e-23 Identities = 46/70 (65%), Positives = 53/70 (75%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQV Sbjct: 7 VYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQV 66
Query: 178 QVSGFLVQKP 149 Q F+ KP Sbjct: 67 QCISFIAYKP 76
>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2 Length = 181
Score = 107 bits (267), Expect = 2e-23 Identities = 46/70 (65%), Positives = 54/70 (77%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQV Sbjct: 106 VYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQV 165
Query: 178 QVSGFLVQKP 149 Q F+ KP Sbjct: 166 QCISFIAYKP 175
>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2 Length = 181
Score = 107 bits (267), Expect = 2e-23 Identities = 46/70 (65%), Positives = 54/70 (77%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQV Sbjct: 106 VYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQV 165
Query: 178 QVSGFLVQKP 149 Q F+ KP Sbjct: 166 QCISFIAYKP 175
>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1 Length = 181
Score = 107 bits (267), Expect = 2e-23 Identities = 46/70 (65%), Positives = 54/70 (77%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQV Sbjct: 106 VYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQV 165
Query: 178 QVSGFLVQKP 149 Q F+ KP Sbjct: 166 QCISFIAYKP 175
>sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1 Length = 181
Score = 105 bits (262), Expect = 7e-23 Identities = 45/70 (64%), Positives = 52/70 (74%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP A IR++GFD RQV Sbjct: 106 VYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQV 165
Query: 178 QVSGFLVQKP 149 Q F+ KP Sbjct: 166 QCISFIAYKP 175
>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1 Length = 181
Score = 105 bits (262), Expect = 7e-23 Identities = 45/70 (64%), Positives = 52/70 (74%) Frame = -1
Query: 358 VYREHFHGIGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQV 179 VYREH GYYDGRYW MWKLP+FGC D+A VL+E+ EC EYP AFIR++GFD RQV Sbjct: 106 VYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQV 165
Query: 178 QVSGFLVQKP 149 Q F+ KP Sbjct: 166 QCISFIAYKP 175
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
72 |
Score (bit) |
141.0 |
E-value |
1.0e-32 |
Report |
|