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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921071
Clone id YMU001_000145_C04
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TACGGGAGTCATGGCCACGATAGCTGGTGCTGTGGCGCCCGCCTGTAGCTCTGCCATAGC
CTCTGCTTCACGATCTTCCTTTTCGGCGTCTTCGCGGGGACTTTCTCTCGGCAGGCCATT
GAGGGTTAGCATCAGCGGTTCAGGTTTAAAGGCTTCACCACGCCATGTGCGATCAGCAAC
CTCCACTGATGAGGCCTCTACTACCTCTACAACAACCTCTGTGCAAACTGAAGAGCTTAT
TGCAGATTTAAAGGCTAAGTGGGATAGCATTGAGGACAAGACTAATCTACTTGTATACGG
AGGGGGTGCTCTTGTTGCAGTATGGTTGTCCTCCACGATTGTTGGGGCTGTAAATTCTGT
GCCATTGCTTCCAAAGGTTTGAGAGCTTGTAGGTTCGGGTTACACTGGTTGGTTTGTCTA
CAAGTACCTTCTT
■■Homology search results ■■ -
sp_hit_id O04616
Definition sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana
Align length 71
Score (bit) 116.0
E-value 3.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921071|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C04.
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chlorop...   116   3e-26
sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, ...    60   3e-09
sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strai...    35   0.17 
sp|Q9H379|YI012_HUMAN Putative uncharacterized protein PRO3102 O...    32   1.1  
sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associat...    32   1.5  
sp|A4WRE3|COBT_RHOS5 Nicotinate-nucleotide--dimethylbenzimidazol...    32   1.5  
sp|Q3J3P6|COBT_RHOS4 Nicotinate-nucleotide--dimethylbenzimidazol...    31   2.5  
sp|A3PIN5|COBT_RHOS1 Nicotinate-nucleotide--dimethylbenzimidazol...    31   2.5  

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150,
           chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1
           SV=1
          Length = 164

 Score =  116 bits (291), Expect = 3e-26
 Identities = 52/71 (73%), Positives = 62/71 (87%)
 Frame = +2

Query: 221 VQTEELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSG 400
           + T ELI DLK KWD +E+K+ +L+YGGGA+VAVWLSS +VGA+NSVPLLPKV ELVG G
Sbjct: 71  IDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLG 130

Query: 401 YTGWFVYKYLL 433
           YTGWFVY+YLL
Sbjct: 131 YTGWFVYRYLL 141


>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa,
           chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
          Length = 174

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 26/67 (38%), Positives = 43/67 (64%)
 Frame = +2

Query: 233 ELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSGYTGW 412
           E++   +  W+ ++DK  +       +VA+W S+ ++ A++ +PL+P V ELVG GYTGW
Sbjct: 85  EIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGW 144

Query: 413 FVYKYLL 433
           F YK L+
Sbjct: 145 FTYKNLV 151


>sp|Q8YX97|SYV_ANASP Valyl-tRNA synthetase OS=Anabaena sp. (strain
           PCC 7120) GN=valS PE=3 SV=1
          Length = 1014

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 21/52 (40%), Positives = 30/52 (57%)
 Frame = +2

Query: 278 KTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSGYTGWFVYKYLL 433
           KT  LV  G  LV + ++  +   V++VP L    E+VG GY+ WFV + LL
Sbjct: 846 KTIGLVIAG--LVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLL 895


>sp|Q9H379|YI012_HUMAN Putative uncharacterized protein PRO3102
           OS=Homo sapiens GN=PRO3102 PE=5 SV=1
          Length = 93

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
 Frame = +1

Query: 295 IRRGCSCCSMVVLHDC---------W-GCKFCAIASKGLRACRFGLHWLVCLQ 423
           ++R   CC + V+  C         W GC+ C         C F LHWL C+Q
Sbjct: 47  MKRAPRCCCLAVVAQCPHHCPVLGCWSGCRCCCY-------CVFELHWLYCIQ 92


>sp|Q55FG3|VP13C_DICDI Putative vacuolar protein sorting-associated
            protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1
          Length = 3848

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -1

Query: 433  KKVLVDKPTSVTRTYKLSNLWK-QWHRIYSPNNRGG 329
            KK++++ PT +T+TY+L NL +     I +PN+ GG
Sbjct: 3128 KKLIIEFPTGLTKTYRLGNLEENSIVSIKNPNSSGG 3163


>sp|A4WRE3|COBT_RHOS5 Nicotinate-nucleotide--dimethylbenzimidazole
           phosphoribosyltransferase OS=Rhodobacter sphaeroides
           (strain ATCC 17025 / ATH 2.4.3) GN=cobT PE=3 SV=1
          Length = 338

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +2

Query: 230 EELIADLKAKWDSIEDKTNLLVYG----GGALVAVWLSSTIVG 346
           +EL+A L A W+++ED+ +LLV G    G    A  +++ + G
Sbjct: 139 DELVAALAAGWEAVEDEADLLVVGEMGIGNTTAAAAIAAALFG 181


>sp|Q3J3P6|COBT_RHOS4 Nicotinate-nucleotide--dimethylbenzimidazole
           phosphoribosyltransferase OS=Rhodobacter sphaeroides
           (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
           GN=cobT PE=3 SV=1
          Length = 338

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +2

Query: 230 EELIADLKAKWDSIEDKTNLLVYG----GGALVAVWLSSTIVG 346
           +EL+A L A W++++D+++LLV G    G    A  +++ + G
Sbjct: 139 DELVAALAAGWEAVDDESDLLVVGEMGIGNTTAAAAIAAALFG 181


>sp|A3PIN5|COBT_RHOS1 Nicotinate-nucleotide--dimethylbenzimidazole
           phosphoribosyltransferase OS=Rhodobacter sphaeroides
           (strain ATCC 17029 / ATH 2.4.9) GN=cobT PE=3 SV=1
          Length = 338

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +2

Query: 230 EELIADLKAKWDSIEDKTNLLVYG----GGALVAVWLSSTIVG 346
           +EL+A L A W++++D+++LLV G    G    A  +++ + G
Sbjct: 139 DELVAALAAGWEAVDDESDLLVVGEMGIGNTTAAAAIAAALFG 181
tr_hit_id B4YYA4
Definition tr|B4YYA4|B4YYA4_THEHA ST6-40 OS=Thellungiella halophila
Align length 71
Score (bit) 116.0
E-value 5.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921071|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C04.
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4YYA4|B4YYA4_THEHA ST6-40 OS=Thellungiella halophila PE=2 SV=1    116   5e-25
tr|A7PZR1|A7PZR1_VITVI Chromosome chr15 scaffold_40, whole genom...   113   4e-24
tr|B6TCN7|B6TCN7_MAIZE Threonine endopeptidase OS=Zea mays PE=2 ...   113   5e-24
tr|B4FTJ9|B4FTJ9_MAIZE Putative uncharacterized protein OS=Zea m...   113   5e-24
tr|B4FR11|B4FR11_MAIZE Putative uncharacterized protein OS=Zea m...   112   7e-24
tr|A9PH76|A9PH76_POPTR Putative uncharacterized protein OS=Popul...   111   2e-23
tr|A9S558|A9S558_PHYPA Predicted protein (Fragment) OS=Physcomit...   111   2e-23
tr|A9NP27|A9NP27_PICSI Putative uncharacterized protein OS=Picea...   111   2e-23
tr|A2X996|A2X996_ORYSI Putative uncharacterized protein OS=Oryza...   111   2e-23
tr|Q6Z2L1|Q6Z2L1_ORYSJ Putative uncharacterized protein P0643A10...   110   3e-23
tr|Q5Z6P4|Q5Z6P4_ORYSJ Os06g0264800 protein OS=Oryza sativa subs...   110   3e-23
tr|Q0DXV3|Q0DXV3_ORYSJ Os02g0731600 protein (Fragment) OS=Oryza ...   110   3e-23
tr|A2YBH2|A2YBH2_ORYSI Putative uncharacterized protein OS=Oryza...   110   3e-23
tr|B7FGQ4|B7FGQ4_MEDTR Putative uncharacterized protein OS=Medic...   108   1e-22
tr|A9TE40|A9TE40_PHYPA Predicted protein OS=Physcomitrella paten...   108   2e-22
tr|A5AEL3|A5AEL3_VITVI Putative uncharacterized protein OS=Vitis...   106   7e-22
tr|A9NNZ7|A9NNZ7_PICSI Putative uncharacterized protein OS=Picea...   102   1e-20
tr|Q6ZKB9|Q6ZKB9_ORYSJ Os08g0430600 protein OS=Oryza sativa subs...   102   1e-20
tr|A2YVG4|A2YVG4_ORYSI Putative uncharacterized protein OS=Oryza...   102   1e-20
tr|A3AB17|A3AB17_ORYSJ Putative uncharacterized protein OS=Oryza...    94   3e-18
tr|A9NN45|A9NN45_PICSI Putative uncharacterized protein OS=Picea...    93   6e-18
tr|A8JG55|A8JG55_CHLRE Predicted protein (Fragment) OS=Chlamydom...    92   2e-17
tr|B6TQX5|B6TQX5_MAIZE Threonine endopeptidase OS=Zea mays PE=4 ...    91   2e-17
tr|B6SNJ7|B6SNJ7_MAIZE Threonine endopeptidase OS=Zea mays PE=2 ...    91   2e-17
tr|A4S1N1|A4S1N1_OSTLU Predicted protein OS=Ostreococcus lucimar...    86   1e-15
tr|B3H429|B3H429_ARATH Uncharacterized protein At4g01150.2 OS=Ar...    78   3e-13
tr|A7R0J5|A7R0J5_VITVI Chromosome undetermined scaffold_310, who...    72   1e-11
tr|Q6K8D8|Q6K8D8_ORYSJ Os02g0759900 protein OS=Oryza sativa subs...    68   2e-10
tr|A2X9U5|A2X9U5_ORYSI Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|Q2HTB6|Q2HTB6_MEDTR Putative uncharacterized protein OS=Medic...    67   6e-10

>tr|B4YYA4|B4YYA4_THEHA ST6-40 OS=Thellungiella halophila PE=2 SV=1
          Length = 169

 Score =  116 bits (291), Expect = 5e-25
 Identities = 52/71 (73%), Positives = 62/71 (87%)
 Frame = +2

Query: 221 VQTEELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSG 400
           + T ELI DLK KWD +E+K+ +L+YGGGA+VAVWLSS +VGA+NSVPLLPKV ELVG G
Sbjct: 76  IDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLG 135

Query: 401 YTGWFVYKYLL 433
           YTGWFVY+YLL
Sbjct: 136 YTGWFVYRYLL 146


>tr|A7PZR1|A7PZR1_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026973001
           PE=4 SV=1
          Length = 166

 Score =  113 bits (283), Expect = 4e-24
 Identities = 50/71 (70%), Positives = 62/71 (87%)
 Frame = +2

Query: 221 VQTEELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSG 400
           + TEEL  DLKAKWD++E+K+ + +YGGGA+VAVWLSS +VGAVNSVPLLPK+ ELVG G
Sbjct: 73  LNTEELFTDLKAKWDALENKSTVFLYGGGAIVAVWLSSVVVGAVNSVPLLPKIMELVGLG 132

Query: 401 YTGWFVYKYLL 433
           YT WFVY+Y+L
Sbjct: 133 YTAWFVYRYIL 143


>tr|B6TCN7|B6TCN7_MAIZE Threonine endopeptidase OS=Zea mays PE=2
           SV=1
          Length = 148

 Score =  113 bits (282), Expect = 5e-24
 Identities = 49/68 (72%), Positives = 62/68 (91%)
 Frame = +2

Query: 230 EELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSGYTG 409
           +ELI DLKAKWD++EDK  +L+YGGGA+VA+WL+S +VGA+N+VPLLPK+ ELVG GYTG
Sbjct: 58  DELIEDLKAKWDAVEDKPTVLLYGGGAVVALWLTSVVVGAINAVPLLPKILELVGLGYTG 117

Query: 410 WFVYKYLL 433
           WFVY+YLL
Sbjct: 118 WFVYRYLL 125


>tr|B4FTJ9|B4FTJ9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 150

 Score =  113 bits (282), Expect = 5e-24
 Identities = 49/68 (72%), Positives = 62/68 (91%)
 Frame = +2

Query: 230 EELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSGYTG 409
           +ELI DLKAKWD++EDK  +L+YGGGA+VA+WL+S +VGA+N+VPLLPK+ ELVG GYTG
Sbjct: 59  DELIEDLKAKWDAVEDKPTVLLYGGGAVVALWLTSVVVGAINAVPLLPKILELVGLGYTG 118

Query: 410 WFVYKYLL 433
           WFVY+YLL
Sbjct: 119 WFVYRYLL 126


>tr|B4FR11|B4FR11_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 157

 Score =  112 bits (281), Expect = 7e-24
 Identities = 50/68 (73%), Positives = 62/68 (91%)
 Frame = +2

Query: 230 EELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSGYTG 409
           +ELIADLKAKWD++E+K+ +L Y GGA+VA+WL+S IVGA+NSVPLLPK+ ELVG GYTG
Sbjct: 67  DELIADLKAKWDAVENKSTVLTYAGGAVVALWLTSVIVGAINSVPLLPKIMELVGLGYTG 126

Query: 410 WFVYKYLL 433
           WFVY+YLL
Sbjct: 127 WFVYRYLL 134


>tr|A9PH76|A9PH76_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 164

 Score =  111 bits (278), Expect = 2e-23
 Identities = 48/71 (67%), Positives = 61/71 (85%)
 Frame = +2

Query: 221 VQTEELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSG 400
           V   E+  DLK KWD++E+K+ +++YGGGA+VAVWLSS ++GAVNSVPLLPK+ ELVG G
Sbjct: 71  VDANEIFTDLKEKWDAVENKSTVIIYGGGAVVAVWLSSILIGAVNSVPLLPKILELVGLG 130

Query: 401 YTGWFVYKYLL 433
           YTGWFVY+YLL
Sbjct: 131 YTGWFVYRYLL 141


>tr|A9S558|A9S558_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_49116 PE=4 SV=1
          Length = 104

 Score =  111 bits (277), Expect = 2e-23
 Identities = 50/70 (71%), Positives = 60/70 (85%)
 Frame = +2

Query: 224 QTEELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSGY 403
           Q +E I DLKAKWD  E+K+ +++Y GGALVA+W SSTIVGA+NSVPLLPKV EL+G GY
Sbjct: 14  QIQEFIDDLKAKWDQTENKSTVVIYAGGALVALWFSSTIVGAINSVPLLPKVMELIGLGY 73

Query: 404 TGWFVYKYLL 433
           TGWFVY+YLL
Sbjct: 74  TGWFVYRYLL 83


>tr|A9NP27|A9NP27_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 171

 Score =  111 bits (277), Expect = 2e-23
 Identities = 48/71 (67%), Positives = 63/71 (88%)
 Frame = +2

Query: 221 VQTEELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSG 400
           VQTEE++ +LK KWD++E+K  +L+YGGGAL+A+W+SS IV A+NSVPLLPK+ EL+G G
Sbjct: 74  VQTEEVLTNLKEKWDAVENKPTVLIYGGGALLALWISSIIVAAINSVPLLPKLMELIGLG 133

Query: 401 YTGWFVYKYLL 433
           YTGWFVY+YLL
Sbjct: 134 YTGWFVYRYLL 144


>tr|A2X996|A2X996_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08812 PE=4 SV=1
          Length = 159

 Score =  111 bits (277), Expect = 2e-23
 Identities = 51/68 (75%), Positives = 60/68 (88%)
 Frame = +2

Query: 230 EELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSGYTG 409
           +ELI DLKAKWD++E+K+ +L Y GGA+VA+WLSS IVGAVNSVPLLPK  ELVG GYTG
Sbjct: 69  DELIEDLKAKWDAVENKSTVLTYAGGAIVALWLSSVIVGAVNSVPLLPKFMELVGLGYTG 128

Query: 410 WFVYKYLL 433
           WFVY+YLL
Sbjct: 129 WFVYRYLL 136


>tr|Q6Z2L1|Q6Z2L1_ORYSJ Putative uncharacterized protein P0643A10.1
           (Putative uncharacterized protein P0617A09.29) OS=Oryza
           sativa subsp. japonica GN=P0643A10.1 PE=4 SV=1
          Length = 159

 Score =  110 bits (276), Expect = 3e-23
 Identities = 50/68 (73%), Positives = 60/68 (88%)
 Frame = +2

Query: 230 EELIADLKAKWDSIEDKTNLLVYGGGALVAVWLSSTIVGAVNSVPLLPKV*ELVGSGYTG 409
           +ELI DLKAKWD++E+K+ +L Y GGA++A+WLSS IVGAVNSVPLLPK  ELVG GYTG
Sbjct: 69  DELIEDLKAKWDAVENKSTVLTYAGGAIIALWLSSVIVGAVNSVPLLPKFMELVGLGYTG 128

Query: 410 WFVYKYLL 433
           WFVY+YLL
Sbjct: 129 WFVYRYLL 136