BP921075
Clone id YMU001_000145_C09
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CGCAGGAGGAAAAGATTGGAAGGAAGTGCCACCGTGCACAAGGAATCTTCGGATTGGAAC
CGTCCGCCTACGTTGAGCGACGGCCCGGAACAAGAACCTTCTTTAAGGTAATCGCAAATT
GTGAAAGAAAGACATCGAGCTTAATGCTCTATGACTTGGGCATGCCCTATGTGGGAGGAC
ACAAGAGGTTTAATACCCTCTAGACTAACAGCGCAGGATTATGCGTAAGGACAAATACCT
AGATTGATTTCTACGAAGATTATTATTCTCGAATTTGAGAAGACGAAATCAAGTTAACAG
AGTCTCAGATAAGGAAACTTTGGATCTGAACAATTGGCCTACCCAAAGCAAAGGCCCGGA
ATAAGAACTTACGTTGGTAAGATGACAATTTGTTTGCCACAGGAAAATTCACATGAGCTT
AATGCTCTCAACATGCCCTATGCGGGAGGACCCAAGAGGTTTAATATCCTCAAGACTAAT
AGCGCAAGGTTATGCGCA
■■Homology search results ■■ -
sp_hit_id Q8NCW5
Definition sp|Q8NCW5|AIBP_HUMAN Apolipoprotein A-I-binding protein OS=Homo sapiens
Align length 37
Score (bit) 30.8
E-value 3.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921075|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C09.
(498 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8NCW5|AIBP_HUMAN Apolipoprotein A-I-binding protein OS=Homo ... 31 3.6
sp|A1RL10|CDD_SHESW Cytidine deaminase OS=Shewanella sp. (strain... 30 4.8
sp|A4Y5R0|CDD_SHEPC Cytidine deaminase OS=Shewanella putrefacien... 30 4.8
sp|A9KXF0|CDD_SHEB9 Cytidine deaminase OS=Shewanella baltica (st... 30 6.3
sp|A6WLY5|CDD_SHEB8 Cytidine deaminase OS=Shewanella baltica (st... 30 6.3
sp|A3D392|CDD_SHEB5 Cytidine deaminase OS=Shewanella baltica (st... 30 6.3
sp|Q6QRN6|AIBP_BOVIN Apolipoprotein A-I-binding protein OS=Bos t... 30 8.0

>sp|Q8NCW5|AIBP_HUMAN Apolipoprotein A-I-binding protein OS=Homo
sapiens GN=APOA1BP PE=1 SV=2
Length = 288

Score = 30.8 bits (68), Expect = 3.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3

Query: 18 GRKCHRAQGIFGLEPSAYVERRPGTRTFFKVIANCER 128
G C R +FG EP+ Y +RP F ++ C++
Sbjct: 124 GLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQK 160


>sp|A1RL10|CDD_SHESW Cytidine deaminase OS=Shewanella sp. (strain
W3-18-1) GN=cdd PE=3 SV=1
Length = 296

Score = 30.4 bits (67), Expect = 4.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1

Query: 382 MTICLPQENSHELNALNMPYAGGPKRFNIL 471
+TI LP + SH L A +PYA GPK N++
Sbjct: 144 ITIHLPAQESHSL-AYYLPYAFGPKDLNVV 172


>sp|A4Y5R0|CDD_SHEPC Cytidine deaminase OS=Shewanella putrefaciens
(strain CN-32 / ATCC BAA-453) GN=cdd PE=3 SV=1
Length = 296

Score = 30.4 bits (67), Expect = 4.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1

Query: 382 MTICLPQENSHELNALNMPYAGGPKRFNIL 471
+TI LP + SH L A +PYA GPK N++
Sbjct: 144 ITIHLPAQESHSL-AYYLPYAFGPKDLNVV 172


>sp|A9KXF0|CDD_SHEB9 Cytidine deaminase OS=Shewanella baltica
(strain OS195) GN=cdd PE=3 SV=1
Length = 296

Score = 30.0 bits (66), Expect = 6.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1

Query: 379 KMTICLPQENSHELNALNMPYAGGPKRFNI 468
K++I LP + SH L A +PYA GPK N+
Sbjct: 143 KISIHLPAQESHPL-AYYLPYAFGPKDLNV 171


>sp|A6WLY5|CDD_SHEB8 Cytidine deaminase OS=Shewanella baltica
(strain OS185) GN=cdd PE=3 SV=1
Length = 296

Score = 30.0 bits (66), Expect = 6.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1

Query: 379 KMTICLPQENSHELNALNMPYAGGPKRFNI 468
K++I LP + SH L A +PYA GPK N+
Sbjct: 143 KISIHLPAQESHPL-AYYLPYAFGPKDLNV 171


>sp|A3D392|CDD_SHEB5 Cytidine deaminase OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=cdd PE=3 SV=1
Length = 296

Score = 30.0 bits (66), Expect = 6.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1

Query: 379 KMTICLPQENSHELNALNMPYAGGPKRFNI 468
K++I LP + SH L A +PYA GPK N+
Sbjct: 143 KISIHLPAQESHPL-AYYLPYAFGPKDLNV 171


>sp|Q6QRN6|AIBP_BOVIN Apolipoprotein A-I-binding protein OS=Bos
taurus GN=APOA1BP PE=2 SV=1
Length = 288

Score = 29.6 bits (65), Expect = 8.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3

Query: 18 GRKCHRAQGIFGLEPSAYVERRPGTRTFFKVIANCER 128
G C R +FG +P+ Y +RP F ++ C++
Sbjct: 124 GLVCARHLKLFGYQPTIYYPKRPNKPLFTALVTQCQK 160


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921075|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C09.
(498 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******