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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921075
Clone id YMU001_000145_C09
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCAGGAGGAAAAGATTGGAAGGAAGTGCCACCGTGCACAAGGAATCTTCGGATTGGAAC
CGTCCGCCTACGTTGAGCGACGGCCCGGAACAAGAACCTTCTTTAAGGTAATCGCAAATT
GTGAAAGAAAGACATCGAGCTTAATGCTCTATGACTTGGGCATGCCCTATGTGGGAGGAC
ACAAGAGGTTTAATACCCTCTAGACTAACAGCGCAGGATTATGCGTAAGGACAAATACCT
AGATTGATTTCTACGAAGATTATTATTCTCGAATTTGAGAAGACGAAATCAAGTTAACAG
AGTCTCAGATAAGGAAACTTTGGATCTGAACAATTGGCCTACCCAAAGCAAAGGCCCGGA
ATAAGAACTTACGTTGGTAAGATGACAATTTGTTTGCCACAGGAAAATTCACATGAGCTT
AATGCTCTCAACATGCCCTATGCGGGAGGACCCAAGAGGTTTAATATCCTCAAGACTAAT
AGCGCAAGGTTATGCGCA
■■Homology search results ■■ -
sp_hit_id Q8NCW5
Definition sp|Q8NCW5|AIBP_HUMAN Apolipoprotein A-I-binding protein OS=Homo sapiens
Align length 37
Score (bit) 30.8
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921075|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C09.
         (498 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NCW5|AIBP_HUMAN Apolipoprotein A-I-binding protein OS=Homo ...    31   3.6  
sp|A1RL10|CDD_SHESW Cytidine deaminase OS=Shewanella sp. (strain...    30   4.8  
sp|A4Y5R0|CDD_SHEPC Cytidine deaminase OS=Shewanella putrefacien...    30   4.8  
sp|A9KXF0|CDD_SHEB9 Cytidine deaminase OS=Shewanella baltica (st...    30   6.3  
sp|A6WLY5|CDD_SHEB8 Cytidine deaminase OS=Shewanella baltica (st...    30   6.3  
sp|A3D392|CDD_SHEB5 Cytidine deaminase OS=Shewanella baltica (st...    30   6.3  
sp|Q6QRN6|AIBP_BOVIN Apolipoprotein A-I-binding protein OS=Bos t...    30   8.0  

>sp|Q8NCW5|AIBP_HUMAN Apolipoprotein A-I-binding protein OS=Homo
           sapiens GN=APOA1BP PE=1 SV=2
          Length = 288

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 18  GRKCHRAQGIFGLEPSAYVERRPGTRTFFKVIANCER 128
           G  C R   +FG EP+ Y  +RP    F  ++  C++
Sbjct: 124 GLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQK 160


>sp|A1RL10|CDD_SHESW Cytidine deaminase OS=Shewanella sp. (strain
           W3-18-1) GN=cdd PE=3 SV=1
          Length = 296

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 382 MTICLPQENSHELNALNMPYAGGPKRFNIL 471
           +TI LP + SH L A  +PYA GPK  N++
Sbjct: 144 ITIHLPAQESHSL-AYYLPYAFGPKDLNVV 172


>sp|A4Y5R0|CDD_SHEPC Cytidine deaminase OS=Shewanella putrefaciens
           (strain CN-32 / ATCC BAA-453) GN=cdd PE=3 SV=1
          Length = 296

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 382 MTICLPQENSHELNALNMPYAGGPKRFNIL 471
           +TI LP + SH L A  +PYA GPK  N++
Sbjct: 144 ITIHLPAQESHSL-AYYLPYAFGPKDLNVV 172


>sp|A9KXF0|CDD_SHEB9 Cytidine deaminase OS=Shewanella baltica
           (strain OS195) GN=cdd PE=3 SV=1
          Length = 296

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 379 KMTICLPQENSHELNALNMPYAGGPKRFNI 468
           K++I LP + SH L A  +PYA GPK  N+
Sbjct: 143 KISIHLPAQESHPL-AYYLPYAFGPKDLNV 171


>sp|A6WLY5|CDD_SHEB8 Cytidine deaminase OS=Shewanella baltica
           (strain OS185) GN=cdd PE=3 SV=1
          Length = 296

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 379 KMTICLPQENSHELNALNMPYAGGPKRFNI 468
           K++I LP + SH L A  +PYA GPK  N+
Sbjct: 143 KISIHLPAQESHPL-AYYLPYAFGPKDLNV 171


>sp|A3D392|CDD_SHEB5 Cytidine deaminase OS=Shewanella baltica
           (strain OS155 / ATCC BAA-1091) GN=cdd PE=3 SV=1
          Length = 296

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 379 KMTICLPQENSHELNALNMPYAGGPKRFNI 468
           K++I LP + SH L A  +PYA GPK  N+
Sbjct: 143 KISIHLPAQESHPL-AYYLPYAFGPKDLNV 171


>sp|Q6QRN6|AIBP_BOVIN Apolipoprotein A-I-binding protein OS=Bos
           taurus GN=APOA1BP PE=2 SV=1
          Length = 288

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 18  GRKCHRAQGIFGLEPSAYVERRPGTRTFFKVIANCER 128
           G  C R   +FG +P+ Y  +RP    F  ++  C++
Sbjct: 124 GLVCARHLKLFGYQPTIYYPKRPNKPLFTALVTQCQK 160
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921075|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C09.
         (498 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******