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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921077
Clone id YMU001_000145_C11
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTACTCCACAAAACAAACACCCTACTTGCAATAATTGAAAAAGCGACAGGATGAGCTTGC
TACTTGTCAAAAAGAGAACTCATCAGCAAAGATGAGAAAATTTCAGAGTTGCAGAGCAAG
CTACACAGTTTGGAGATGAAACAAGGGATTCGAGAAACTCCCAAGTCAAGGGGAAGAAAA
GGCAGCTTTCACACATTCAGCACCATTACTAACAAAGGTCATAATGAAAAGAATGGGATC
AAAGTTTTTGCACTTGCCTCTTCGCGAGAGAAAACATTGTCCTCTCCATGTATAACTCTA
ATTATGCTCTTTGGAGAAAAGAGCTCATGACCGCAAGCATCCATGGATTGCGTGGACTAC
ACCTAAGCACATGGGTGGCATTGCTTGGACTGATGTAGGCATCCTGGCGTGGAGGATATC
TCTGCAAACTTTTTGCCATGTAAATATG
■■Homology search results ■■ -
sp_hit_id A2AKX3
Definition sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus
Align length 53
Score (bit) 32.3
E-value 0.95
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921077|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C11.
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus...    32   0.95 
sp|P35736|YKF0_YEAST Uncharacterized protein YKL050C OS=Saccharo...    30   3.6  
sp|Q6PIU9|YJ005_MOUSE Uncharacterized protein FLJ45252 homolog O...    30   3.6  
sp|Q8CPK4|FTSZ_STAES Cell division protein ftsZ OS=Staphylococcu...    30   4.7  
sp|Q5HQ06|FTSZ_STAEQ Cell division protein ftsZ OS=Staphylococcu...    30   4.7  
sp|Q6BND2|CET1_DEBHA mRNA-capping enzyme subunit beta OS=Debaryo...    30   4.7  
sp|Q2YDE2|CA111_BOVIN Uncharacterized protein C1orf111 homolog O...    30   4.7  

>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus
            GN=Setx PE=2 SV=1
          Length = 2646

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 16/53 (30%), Positives = 32/53 (60%)
 Frame = +2

Query: 44   RQDELATCQKENSSAKMRKFQSCRASYTVWR*NKGFEKLPSQGEEKAAFTHSA 202
            +++E    + E+S +++ +F+S    ++VW+ +K   K   QGE+K+  TH A
Sbjct: 1051 KEEERYPVEFEDSESQVFEFESSSEVFSVWQDHKIDSKNSLQGEQKSYVTHVA 1103


>sp|P35736|YKF0_YEAST Uncharacterized protein YKL050C
           OS=Saccharomyces cerevisiae GN=YKL050C PE=1 SV=1
          Length = 922

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +1

Query: 88  KDEKISELQSKLHSLEMKQGIRETPKSRGRKGSFHTFSTITNKGHNEKNGIKVFALASSR 267
           K  ++S LQ  LHS EM +   ETP+S     S H   TI +        +   A+  ++
Sbjct: 26  KAVRVSTLQESLHSSEMHRAAPETPRS--ISNSVHKLKTIYSTYQQSGQPLSKEAIFRAK 83

Query: 268 EK--TLSSPCITLIMLFGEKSS 327
           +K   L++P     +  G+  S
Sbjct: 84  QKYGILNTPANYKTLGLGDSKS 105


>sp|Q6PIU9|YJ005_MOUSE Uncharacterized protein FLJ45252 homolog
           OS=Mus musculus PE=1 SV=2
          Length = 354

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = +1

Query: 88  KDEKISELQSKLH--SLEMKQGIRETPKSRGRKGSFHTFSTITNKGHNEKNGIKVFALAS 261
           +DE    LQ KL   +L  + G+   P+ RG+ G    F  I  +  ++     VFA A 
Sbjct: 69  EDENCRPLQEKLGEAALFSESGVCTEPEERGQGGKKSQFLPINQRASDDLGEPDVFATAP 128

Query: 262 SREKTLSSPCITLIML--FGEKSS*PQASMDCVD 357
            R   + +  + +     F  K S   + MD VD
Sbjct: 129 FRSSLVPADDVDIFSKAPFVSKGSVAPSQMDEVD 162


>sp|Q8CPK4|FTSZ_STAES Cell division protein ftsZ OS=Staphylococcus
           epidermidis (strain ATCC 12228) GN=ftsZ PE=3 SV=1
          Length = 394

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 106 ELQSKLHSLEMKQGIRETPKSRGRKGSFHTFSTITNKGHNEKNGIKVFALASSREKTLSS 285
           ELQ ++    +  G  + P S+GRK +   F +  N   N ++G      AS++E + S+
Sbjct: 301 ELQDEIVVTVIATGFEDKPSSQGRKATSTGFGSSVNSSSNHQSG------ASAKEDSFSA 354


>sp|Q5HQ06|FTSZ_STAEQ Cell division protein ftsZ OS=Staphylococcus
           epidermidis (strain ATCC 35984 / RP62A) GN=ftsZ PE=3
           SV=1
          Length = 394

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 106 ELQSKLHSLEMKQGIRETPKSRGRKGSFHTFSTITNKGHNEKNGIKVFALASSREKTLSS 285
           ELQ ++    +  G  + P S+GRK +   F +  N   N ++G      AS++E + S+
Sbjct: 301 ELQDEIVVTVIATGFEDKPSSQGRKATSTGFGSSVNSSSNHQSG------ASAKEDSFSA 354


>sp|Q6BND2|CET1_DEBHA mRNA-capping enzyme subunit beta
           OS=Debaryomyces hansenii GN=CET1 PE=3 SV=2
          Length = 476

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +2

Query: 38  KKRQDELATCQKENSSAKMRKFQSCRASYTVWR*NKGFEKLPSQGEEKAAFTHS------ 199
           K  QDEL    + NS++  RKF    +  T       F ++ S+ E+  +   S      
Sbjct: 275 KSYQDELRRSPQANSNSPKRKFNILESDIT-----DNFYQITSRNEQPKSIRISKDNLLD 329

Query: 200 APLLTKVIMKRMGSKFLHLP 259
            P  T +  +R+ S F+H P
Sbjct: 330 PPRYTAINKQRLSSLFIHNP 349


>sp|Q2YDE2|CA111_BOVIN Uncharacterized protein C1orf111 homolog
           OS=Bos taurus PE=2 SV=1
          Length = 247

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 429 VCRDILHARMPTSVQAMPPMCLGVV--HAIHGCLRS 328
           + + +L   +P+ VQA+PP C G V  H +H  + S
Sbjct: 36  IAKPVLPTEVPSPVQALPPQCPGGVLRHGVHNIVIS 71
tr_hit_id Q464Y1
Definition tr|Q464Y1|Q464Y1_METBF Putative uncharacterized protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
Align length 66
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921077|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_C11.
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q464Y1|Q464Y1_METBF Putative uncharacterized protein OS=Metha...    35   1.9  
tr|A5K7Y6|A5K7Y6_PLAVI Putative uncharacterized protein OS=Plasm...    34   4.2  
tr|A2DV89|A2DV89_TRIVA Putative uncharacterized protein OS=Trich...    34   4.2  

>tr|Q464Y1|Q464Y1_METBF Putative uncharacterized protein
           OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
           GN=Mbar_A3698 PE=4 SV=1
          Length = 662

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/66 (31%), Positives = 38/66 (57%)
 Frame = +1

Query: 70  KRELISKDEKISELQSKLHSLEMKQGIRETPKSRGRKGSFHTFSTITNKGHNEKNGIKVF 249
           K+ELI+KD KIS+L+S+L+S + K+   E  KS+  K    T + +  +  ++   +K  
Sbjct: 452 KKELIAKDRKISKLESRLNSFK-KEAYSEIRKSKEIKIRNETIANLKKEVSHKSKTVKEL 510

Query: 250 ALASSR 267
              S++
Sbjct: 511 RRRSNK 516


>tr|A5K7Y6|A5K7Y6_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_082630 PE=4 SV=1
          Length = 456

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 70  KRELISKDEKISELQSKLHSLEMKQGIRETPKSRGRKGSFHTFS--TITNKGHNEKNGIK 243
           + +L  KDE+I  L+ KL++ ++K  I E            TF   ++  +G N+   IK
Sbjct: 225 REDLTQKDEQIQNLKEKLYTYKLKHDITEED----------TFDRQSVDGRGENDMKTIK 274

Query: 244 VFALASSREKTLSS 285
           + +    R KTL S
Sbjct: 275 IKSKVIRRVKTLDS 288


>tr|A2DV89|A2DV89_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_405990 PE=4 SV=1
          Length = 1585

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = +1

Query: 88  KDEKISELQSKLHSLEMKQGIRETPKSRGRK----GSFHTFSTITNKGHNEKNGIKVF-A 252
           K+E+  E + ++H ++  +  +ETP +  RK    G+F  FS       +E +GI++F  
Sbjct: 348 KEEEKHEKEEQMHEVKEPEPKKETPPTSPRKLDFSGTFEGFSEPPTPRKDETSGIQIFDT 407

Query: 253 LASSREKTLSSPCIT 297
           L  S E  +  P +T
Sbjct: 408 LNESLEDKIIVPSLT 422