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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921080
Clone id YMU001_000145_D02
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATATGCAGAGAGGGCTAACGGAAAGGTGTGCTGAAAGCCTCATTAGTGAGGAAATTCAA
GTTTTAATGCAGAGTTTGTATGTGGATGCAAGTGATTTGATAGACAGTTCAGCTGAGGTT
ATGCTTCCAATGGCAGGAAGCATTTTAAACAAGGGCATCCAATCTTCCAACAATGGTCTT
AGGGCATCCAAAGAGATGACATGGGCAGCAAGTCCGCCCACCGATGTTTTCAATTCGAGC
GTCAGATCAGAAACTGCCCCAGGCCTAGCGATACAGGATGCCTCTTTGTTTCCTCCTGAG
GTAGAGCTGGGTTTGTGGCCTGAAGATTATGTTTTATCTGACCATGCCCCGCTAACTACG
TCTTTCAGACCAAGAAGGGCGTGCGACTAGTGTTATTCTACCTCATTGGAGTTTGTCTAA
GCTGAGGCAGAATTCAGCAAACATGAGCTGCCACTATATACACATCTATATGTTGCTTCA
CCGG
■■Homology search results ■■ -
sp_hit_id O81916
Definition sp|O81916|YC22_ARATH Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana
Align length 41
Score (bit) 50.4
E-value 4.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921080|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_D02.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O81916|YC22_ARATH Uncharacterized calcium-binding protein At1...    50   4e-06
sp|Q6NH07|EFP_CORDI Elongation factor P OS=Corynebacterium dipht...    33   0.89 
sp|O22131|LBD18_ARATH LOB domain-containing protein 18 OS=Arabid...    32   1.2  
sp|A1KAG3|SYM_AZOSB Methionyl-tRNA synthetase OS=Azoarcus sp. (s...    32   1.5  
sp|Q8ET99|SYI2_OCEIH Isoleucyl-tRNA synthetase 2 OS=Oceanobacill...    32   2.0  
sp|P40497|YIJ2_YEAST Uncharacterized protein YIL092W OS=Saccharo...    31   2.6  
sp|Q3UV17|K22O_MOUSE Keratin, type II cytoskeletal 2 oral OS=Mus...    31   3.4  
sp|P03872|REP2_YEAST Partitioning protein REP2 OS=Saccharomyces ...    30   4.4  
sp|Q8UB29|UGPC3_AGRT5 sn-glycerol-3-phosphate import ATP-binding...    30   7.5  
sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protei...    29   9.8  
sp|Q7NTU0|LOLD_CHRVO Lipoprotein-releasing system ATP-binding pr...    29   9.8  
sp|Q2J829|EFP_FRASC Elongation factor P OS=Frankia sp. (strain C...    29   9.8  

>sp|O81916|YC22_ARATH Uncharacterized calcium-binding protein
           At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2
          Length = 484

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 23/41 (56%), Positives = 27/41 (65%)
 Frame = +1

Query: 250 ETAPGLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSFRP 372
           + A GL +  A LFP E E GLWPE+Y +SDHA LT  F P
Sbjct: 438 DEAIGLKVNKAILFPQEAEKGLWPENYNISDHACLTVQFSP 478


>sp|Q6NH07|EFP_CORDI Elongation factor P OS=Corynebacterium
           diphtheriae GN=efp PE=3 SV=1
          Length = 187

 Score = 32.7 bits (73), Expect = 0.89
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
 Frame = -3

Query: 368 LKDVVSGAWSDKT*SSGHKPSSTSGGNKEASCIARPGAVSDLTLELKTSVGGLAAHVISL 189
           LKDVVSG  +DKT ++G K  + +   ++ + +   G+   +  E       LA H+   
Sbjct: 41  LKDVVSGKVTDKTFNAGVKVETATVDRRDMTYLYNDGSSYVVMDEKTFEQAELAPHIFG- 99

Query: 188 DALRPLLE---------DWMPLFKMLP 135
           DA R LLE         +  PLF  LP
Sbjct: 100 DAARFLLENTTVQVSFHEGEPLFAELP 126


>sp|O22131|LBD18_ARATH LOB domain-containing protein 18
           OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2
          Length = 262

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = -3

Query: 275 CIARPGAVSDLTLELKTSVGGLAAHVISLDALRPL-----LEDWMPLFKMLPAIGSITSA 111
           C+A   A+    + L+  V  L AH+ SL+  +P      +    PLF   P   +IT  
Sbjct: 113 CVAHIFALQQQVVNLQAEVSYLQAHLASLELPQPQTRPQPMPQPQPLFFTPPPPLAITDL 172

Query: 110 ELSIKSLASTYKL 72
             S+  L STY L
Sbjct: 173 PASVSPLPSTYDL 185


>sp|A1KAG3|SYM_AZOSB Methionyl-tRNA synthetase OS=Azoarcus sp.
           (strain BH72) GN=metG PE=3 SV=1
          Length = 723

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = -3

Query: 248 DLTLELKTSVGGLAAHVISLDALRPLLEDWMPLFKMLPAIGSITS 114
           DLTL LK  + GLAA V +  AL PL   W   +K LPA  +IT+
Sbjct: 500 DLTLYLKPVLPGLAAKVEAFLALPPL--QWNDSWKPLPAGHAITA 542


>sp|Q8ET99|SYI2_OCEIH Isoleucyl-tRNA synthetase 2 OS=Oceanobacillus
           iheyensis GN=ileS2 PE=3 SV=1
          Length = 1022

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 4   MQRGLTERCAESLISEEIQVLMQSLYVDASDLIDSSAEVMLPMAGSILNKGI 159
           +Q GL  +   S+I EEI V   S   D +D +D+  ++  P+AG  L K +
Sbjct: 821 LQSGL--QAYTSIIEEEINVKQVSFKKDTADFLDTEMKLNFPVAGPKLGKQV 870


>sp|P40497|YIJ2_YEAST Uncharacterized protein YIL092W
           OS=Saccharomyces cerevisiae GN=YIL092W PE=1 SV=1
          Length = 633

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 25/96 (26%), Positives = 41/96 (42%)
 Frame = +1

Query: 10  RGLTERCAESLISEEIQVLMQSLYVDASDLIDSSAEVMLPMAGSILNKGIQSSNNGLRAS 189
           R L ERC          V   SL    S++   +AE+     GS+L+ GI +S     +S
Sbjct: 403 RSLNERCCA--------VKKNSLQPITSNIFQKNAEIQGTKIGSVLDSGISNS----FSS 450

Query: 190 KEMTWAASPPTDVFNSSVRSETAPGLAIQDASLFPP 297
            E  +  +    V N   ++E +    ++D + F P
Sbjct: 451 TEYMFPPTSSATVSNPVKKNEISKSSQVKDIAQFNP 486


>sp|Q3UV17|K22O_MOUSE Keratin, type II cytoskeletal 2 oral OS=Mus
           musculus GN=Krt76 PE=2 SV=1
          Length = 594

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 323 SGHKPSSTSGGNKEASCIARPGAVSDLTLELKTSVGGLAAH 201
           SGH  S+   G+  +SC+AR GA S      ++  G L +H
Sbjct: 18  SGH--SAVVSGSSRSSCVARSGAASGGACGFRSGAGSLGSH 56


>sp|P03872|REP2_YEAST Partitioning protein REP2 OS=Saccharomyces
           cerevisiae GN=REP2 PE=1 SV=1
          Length = 296

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +1

Query: 85  DASDLIDSSAEVMLPMAGSILNKGIQSSNNGLRASKEMTWAA 210
           D+S   DSSAEV+LP A  ++ +   S  NG+ +S+E + AA
Sbjct: 75  DSSVSSDSSAEVILP-AAKMVKERFDSIGNGMLSSQEASQAA 115


>sp|Q8UB29|UGPC3_AGRT5 sn-glycerol-3-phosphate import ATP-binding
           protein ugpC 3 OS=Agrobacterium tumefaciens (strain C58
           / ATCC 33970) GN=ugpC3 PE=3 SV=1
          Length = 353

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 199 TWAASPPTDVF-NSSVRSETAPGLAIQDASLFPPEVE-LGLWPEDYVLSDHAPLTTSF 366
           T+  SP  ++  + +  S  + G ++  A+  PP V  LG+ PED  L++  P   +F
Sbjct: 233 TFIGSPSMNLLAHGAASSNVSAGWSVNAAAALPPTVATLGIRPEDITLAEAEPADAAF 290


>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein
           At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
          Length = 484

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +1

Query: 163 SSNNGLRASKEMTWAASPPTDVFNSSVRSETAPGLAIQDASLFPPEVELGLWPEDYVLSD 342
           S +N   A++  +   +P   VFN+ ++  +  G  ++  S F      G+W ++Y    
Sbjct: 48  SLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYT--- 104

Query: 343 HAPLTTS 363
           +APL  S
Sbjct: 105 YAPLLKS 111
tr_hit_id A7QF56
Definition tr|A7QF56|A7QF56_VITVI Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Vitis vinifera
Align length 113
Score (bit) 61.6
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921080|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_D02.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QF56|A7QF56_VITVI Chromosome undetermined scaffold_87, whol...    62   2e-08
tr|A5ALG3|A5ALG3_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|B8LK58|B8LK58_PICSI Putative uncharacterized protein OS=Picea...    61   2e-08
tr|Q9LVV7|Q9LVV7_ARATH Gb|AAC24386.1 OS=Arabidopsis thaliana GN=...    60   7e-08
tr|Q8GUH8|Q8GUH8_ARATH Putative uncharacterized protein At5g5413...    60   7e-08
tr|Q33A97|Q33A97_ORYSJ Endonuclease/exonuclease/phosphatase fami...    60   7e-08
tr|Q33A95|Q33A95_ORYSJ Os10g0203000 protein OS=Oryza sativa subs...    60   7e-08
tr|B8BG35|B8BG35_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|Q8S642|Q8S642_ORYSJ Putative endonuclease OS=Oryza sativa sub...    59   1e-07
tr|B4FD61|B4FD61_MAIZE Putative uncharacterized protein OS=Zea m...    59   1e-07
tr|A7QET7|A7QET7_VITVI Chromosome chr16 scaffold_86, whole genom...    54   3e-06
tr|A5ATV5|A5ATV5_VITVI Putative uncharacterized protein OS=Vitis...    54   3e-06
tr|A7PXW3|A7PXW3_VITVI Chromosome chr15 scaffold_37, whole genom...    45   0.002
tr|Q22106|Q22106_CAEEL Putative uncharacterized protein OS=Caeno...    35   1.4  
tr|B8MDD7|B8MDD7_9EURO Alpha glucosidase II, alpha subunit, puta...    34   4.1  
tr|B4FGU4|B4FGU4_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.1  
tr|Q2NS81|Q2NS81_SODGM Putative carboxypeptidase OS=Sodalis glos...    33   5.3  
tr|A4T686|A4T686_MYCGI Putative secreted protein OS=Mycobacteriu...    33   5.3  
tr|B5G7W3|B5G7W3_9ACTO GTPase ObgE OS=Streptomyces sp. SPB74 GN=...    33   5.4  
tr|B6MCL2|B6MCL2_BRAFL Putative uncharacterized protein OS=Branc...    33   7.0  
tr|B6WWX7|B6WWX7_9DELT Putative uncharacterized protein OS=Desul...    33   9.2  

>tr|A7QF56|A7QF56_VITVI Chromosome undetermined scaffold_87, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037288001 PE=4 SV=1
          Length = 439

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
 Frame = +1

Query: 40  LISEEIQVLMQSLYVDASDLID----SSAEVMLPMAGSILNKGIQSSNNGLRASKEMTWA 207
           L +E+ + L + L  D + +ID    S AE + P   S+L K     N G    KEM   
Sbjct: 335 LCNEDTKKLWEHLDTDRNGVIDLLQYSRAENLHP---SLLQKEDTEENGG--QIKEM--- 386

Query: 208 ASPPTDVFNSSVRSETAPGLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSF 366
                  FN+S  S T  G  +++A LFPPEVE G+WPE+Y LSDHA LT  F
Sbjct: 387 -------FNTST-STTMIGFNVKNAMLFPPEVEKGMWPENYSLSDHAHLTVEF 431


>tr|A5ALG3|A5ALG3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031604 PE=4 SV=1
          Length = 435

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
 Frame = +1

Query: 40  LISEEIQVLMQSLYVDASDLID----SSAEVMLPMAGSILNKGIQSSNNGLRASKEMTWA 207
           L +E+ + L + L  D + +ID    S AE + P+   +L K     N G    KEM   
Sbjct: 331 LCNEDTKKLWEHLDTDRNGVIDLLQYSRAENLYPL---LLQKEDTEENGG--QIKEM--- 382

Query: 208 ASPPTDVFNSSVRSETAPGLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSF 366
                  FN+S  S T  G  +++A LFPPEVE G+WPE+Y LSDHA LT  F
Sbjct: 383 -------FNTST-STTMIGFNVKNAMLFPPEVEKGMWPENYSLSDHAHLTVEF 427


>tr|B8LK58|B8LK58_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 606

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 39/161 (24%)
 Frame = +1

Query: 7   QRGLTERCAESLISEEIQVLMQSLYVDASDLIDSSAEVMLPMAGSILNKGIQSSN----- 171
           Q GLTE+ +E L +EEI+ LM +  +D + +IDS     L +A SI ++ ++  N     
Sbjct: 436 QLGLTEQFSEGLTTEEIEDLMVAADLDGNGIIDSREFQKLMVAQSI-DRSLEGKNVAEVK 494

Query: 172 --------NGLRASKE-----------------MTWAASPPTDVFNSSVRS--------- 249
                   N  R  K+                  T  +   T +      S         
Sbjct: 495 LSAPYFPGNSERPLKQCQNGSTTVEPNKHSLLMQTIGSESGTPLMKFDADSNMQDPCCLQ 554

Query: 250 ETAPGLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSFRP 372
           ET  G  ++ ASLFP EVE G+WPE+Y++SDHA L+  F P
Sbjct: 555 ETEIGFDVKRASLFPSEVEQGIWPENYLMSDHALLSAVFSP 595


>tr|Q9LVV7|Q9LVV7_ARATH Gb|AAC24386.1 OS=Arabidopsis thaliana
           GN=At5g54130 PE=4 SV=1
          Length = 232

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
 Frame = +1

Query: 172 NGLRASKEM-------TWAASPPTDVFNSSVRSETAPGLAIQDASLFPPEVELGLWPEDY 330
           NGL   KE        TW+     +   +    E   G ++++A LFPPEVE G+WPE+Y
Sbjct: 149 NGLLDYKEFQQRIWNQTWSEQRDAEDGEAKGNQEQTVGFSVKNAVLFPPEVEKGMWPENY 208

Query: 331 VLSDHAPLTTSFRPRR 378
            LSDHA LT  F P R
Sbjct: 209 SLSDHARLTVVFSPIR 224


>tr|Q8GUH8|Q8GUH8_ARATH Putative uncharacterized protein At5g54130
           (At5g54130) OS=Arabidopsis thaliana GN=At5g54130 PE=2
           SV=1
          Length = 436

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
 Frame = +1

Query: 172 NGLRASKEM-------TWAASPPTDVFNSSVRSETAPGLAIQDASLFPPEVELGLWPEDY 330
           NGL   KE        TW+     +   +    E   G ++++A LFPPEVE G+WPE+Y
Sbjct: 353 NGLLDYKEFQQRIWNQTWSEQRDAEDGEAKGNQEQTVGFSVKNAVLFPPEVEKGMWPENY 412

Query: 331 VLSDHAPLTTSFRPRR 378
            LSDHA LT  F P R
Sbjct: 413 SLSDHARLTVVFSPIR 428


>tr|Q33A97|Q33A97_ORYSJ Endonuclease/exonuclease/phosphatase family
           protein, putative, expressed OS=Oryza sativa subsp.
           japonica GN=LOC_Os10g13550 PE=4 SV=2
          Length = 303

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = +1

Query: 247 SETAPGLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSFRPRR 378
           ++ A G  +++A LFPPEVE G+WPE+Y LSDHAPLT  F P R
Sbjct: 249 NDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLTVVFSPVR 292


>tr|Q33A95|Q33A95_ORYSJ Os10g0203000 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0203000 PE=2 SV=2
          Length = 471

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = +1

Query: 247 SETAPGLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSFRPRR 378
           ++ A G  +++A LFPPEVE G+WPE+Y LSDHAPLT  F P R
Sbjct: 417 NDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLTVVFSPVR 460


>tr|B8BG35|B8BG35_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32996 PE=4 SV=1
          Length = 325

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = +1

Query: 247 SETAPGLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSFRPRR 378
           ++ A G  +++A LFPPEVE G+WPE+Y LSDHAPLT  F P R
Sbjct: 271 NDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLTVVFSPVR 314


>tr|Q8S642|Q8S642_ORYSJ Putative endonuclease OS=Oryza sativa subsp.
           japonica GN=OSJNBa0004P12.3 PE=4 SV=1
          Length = 483

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 247 SETAPGLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSFRP 372
           ++ A G  +++A LFPPEVE G+WPE+Y LSDHAPLT  F P
Sbjct: 417 NDEAFGFTVKEAVLFPPEVEKGMWPENYSLSDHAPLTVVFSP 458


>tr|B4FD61|B4FD61_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 454

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +1

Query: 262 GLAIQDASLFPPEVELGLWPEDYVLSDHAPLTTSFRPRR 378
           G  +++A LFPPEVE G+WPE+Y LSDHAPLT  F P R
Sbjct: 405 GFTVKEAVLFPPEVEKGMWPENYSLSDHAPLTVVFSPIR 443