BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921083|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_D05.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y802|LSD1_SCHPO SWM histone demethylase complex catalytic s...    33   0.63 
sp|Q9PJV0|OMCB_CHLMU Large cysteine-rich periplasmic protein omc...    31   2.4  
sp|Q5FVL7|KTU_RAT Protein kintoun OS=Rattus norvegicus GN=Ktu PE...    30   3.1  
sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenor...    30   4.0  
sp|A5DBS1|DUS3_PICGU tRNA-dihydrouridine synthase 3 OS=Pichia gu...    30   5.3  
sp|A6Q1P1|END4_NITSB Probable endonuclease 4 OS=Nitratiruptor sp...    29   7.0  

>sp|Q9Y802|LSD1_SCHPO SWM histone demethylase complex catalytic
           subunit lsd1 OS=Schizosaccharomyces pombe GN=lsd1 PE=1
           SV=1
          Length = 1000

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 160 LVKLCLNSLIAMPTLRSGPLYALLARHMAFHTFCVCNRYYI 282
           +V L  +SLI MPTL S PLY + ++ ++       NR +I
Sbjct: 339 MVNLLTDSLIGMPTLDSDPLYIISSQQLSLDAVHTRNREFI 379


>sp|Q9PJV0|OMCB_CHLMU Large cysteine-rich periplasmic protein omcB
           OS=Chlamydia muridarum GN=omcB PE=3 SV=2
          Length = 548

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -2

Query: 294 SISTNVISIANTKCMESHMSCKESIKRTTSQSRHSYQR 181
           S+STNVIS+A+TK  E+    K+   R   Q+R S  R
Sbjct: 33  SLSTNVISLADTKAKETTSHQKDRKARKNHQNRTSVVR 70


>sp|Q5FVL7|KTU_RAT Protein kintoun OS=Rattus norvegicus GN=Ktu PE=2
           SV=2
          Length = 817

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = +1

Query: 163 VKLCLNSLIAMPTLRSGPLYALLA--RHMAFHTFCVCNRYYI--SGNTH*TLLFVFHLEA 330
           V +C NSL+  P+ R GP     A   H +        R Y   +GN +     VFH EA
Sbjct: 90  VNVCSNSLVGAPSSRPGPGRGGTAAGSHWSLPYSLAPGRQYAGRNGNRYTVYDVVFHPEA 149

Query: 331 QLVGQSKKSFAQIL 372
             + +S + F ++L
Sbjct: 150 LALARSHERFREML 163


>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1
           OS=Caenorhabditis elegans GN=hrd-1 PE=1 SV=1
          Length = 610

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +3

Query: 111 MRHLPLIVNALLIRVATCQALFKFFDSY----AYFEKWSSLCSPCTTYGFPYILCLQ*IL 278
           M   P+I     +R+ T  A   F DSY    AYF   +   S    +GF Y + L  +L
Sbjct: 128 MERSPVITLRFHLRMMTVLAALGFADSYFVSSAYFTTITRGASAQIVFGFEYAILLALVL 187

Query: 279 H 281
           H
Sbjct: 188 H 188


>sp|A5DBS1|DUS3_PICGU tRNA-dihydrouridine synthase 3 OS=Pichia
           guilliermondii GN=DUS3 PE=3 SV=2
          Length = 607

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 68  EHCRVQHSHTSAL*DEAPTLDSKCPSY 148
           EHCR  H  T+ L  +AP +D  CP +
Sbjct: 103 EHCRSTHDVTTYLAAKAPDIDGVCPVF 129


>sp|A6Q1P1|END4_NITSB Probable endonuclease 4 OS=Nitratiruptor sp.
           (strain SB155-2) GN=nfo PE=3 SV=1
          Length = 281

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 337 QAEPLGGTQKEEFNEYFH*CNIYCKHKMYGKPYVVQGEHKED 212
           +A+PL     E+FNE+   C I  KH +    Y++   H E+
Sbjct: 41  KAKPLSKENIEKFNEHLECCGIEKKHILPHDSYLINLGHPEE 82

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921083|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_D05.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******