BP921094 |
Clone id |
YMU001_000145_E05 |
Library |
YMU01 |
Length |
415 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000145_E05. |
Accession |
BP921094 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CCAAAGGTGTAAACTACAGGCGGATAGTGAGAATGCTTTTTCCTTTGGCTTACCTTGGAT TTTCTCCTTTCTAGCCTCCTCCATTAGAAATTCTAGCAGAACAAAAGGCACATCTAGATT GGATTCTCCTTCTGAGTTGCCAATCTTGTTGCCCTTTTCGAGGTTCTTGCCATATCCTCT TCTCTCTTTAGCTTCATTGTTATGAGACCTAGATATATATGCATACAATGAAAGGTAATA ATTGGATCTTCCCACTCAGTGGGTTTTTCAATACAATTGCCCACCTAGCATAGTTGTGAT GCACAACTTTTCCCTCATGTGCTATCATCAATGCATACAGCCAGAAAACTCCATTTCCAT GAGAACCTTCAGTAGATTTACCTTGAAGTTTACATTCTACTTGCACGCCACAGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P97868 |
Definition |
sp|P97868|RBBP6_MOUSE Retinoblastoma-binding protein 6 OS=Mus musculus |
Align length |
43 |
Score (bit) |
36.6 |
E-value |
0.04 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A0PJG9 |
Definition |
tr|A0PJG9|A0PJG9_MOUSE Rbbp6 protein (Fragment) OS=Mus musculus |
Align length |
43 |
Score (bit) |
36.6 |
E-value |
0.64 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921094|Adiantum capillus-veneris mRNA, clone: YMU001_000145_E05. (415 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A0PJG9|A0PJG9_MOUSE Rbbp6 protein (Fragment) OS=Mus musculus ... 37 0.64 tr|Q24FD5|Q24FD5_TETTH Protein kinase domain containing protein ... 35 2.4 tr|B5D363|B5D363_9BACE Putative uncharacterized protein OS=Bacte... 34 3.2 tr|A9T007|A9T007_PHYPA Predicted protein OS=Physcomitrella paten... 34 4.2 tr|A0EHI5|A0EHI5_PARTE Chromosome undetermined scaffold_97, whol... 33 5.4 tr|A0DJL5|A0DJL5_PARTE Chromosome undetermined scaffold_53, whol... 33 5.4 tr|A0BPA1|A0BPA1_PARTE Chromosome undetermined scaffold_12, whol... 33 5.4 tr|A9TKX8|A9TKX8_PHYPA Predicted protein OS=Physcomitrella paten... 27 5.7 tr|Q9U0J6|Q9U0J6_PLAF7 Putative uncharacterized protein PFD0445c... 33 7.1
>tr|A0PJG9|A0PJG9_MOUSE Rbbp6 protein (Fragment) OS=Mus musculus GN=Rbbp6 PE=2 SV=1 Length = 587
Score = 36.6 bits (83), Expect = 0.64 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -2
Query: 165 NLEKGNKIGNSEGESNLDVPFVLLEFLMEEARKEKIQGKPKEK 37 N E G KIGN+E S P LE + ++EK++GK K K Sbjct: 69 NRETGKKIGNAENASTTKEPSEKLESTSSKIKQEKVKGKAKRK 111
>tr|Q24FD5|Q24FD5_TETTH Protein kinase domain containing protein OS=Tetrahymena thermophila SB210 GN=TTHERM_00865280 PE=4 SV=1 Length = 957
Score = 34.7 bits (78), Expect = 2.4 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1
Query: 340 LYALMIAHEGKVVHHNYARWAIVLKNPLSGKIQLLPFIV 224 LYA+ + H+ K++ HN R+A+ +N LS + PFIV Sbjct: 659 LYAMKVLHKSKIMRHNLTRYALTERNVLS--VTKHPFIV 695
>tr|B5D363|B5D363_9BACE Putative uncharacterized protein OS=Bacteroides plebeius DSM 17135 GN=BACPLE_03457 PE=4 SV=1 Length = 705
Score = 34.3 bits (77), Expect = 3.2 Identities = 18/63 (28%), Positives = 33/63 (52%) Frame = -2
Query: 315 REKLCITTMLGGQLY*KTH*VGRSNYYLSLYAYISRSHNNEAKERRGYGKNLEKGNKIGN 136 ++ LC T +L LY +T V +N++ L ++ + GYGK +++GN++G Sbjct: 644 KDWLCATNLLSTPLYSETRLVEGNNFHQRLNLSVTYTF--------GYGKKVKRGNEVGE 695
Query: 135 SEG 127 G Sbjct: 696 QSG 698
>tr|A9T007|A9T007_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_86296 PE=4 SV=1 Length = 406
Score = 33.9 bits (76), Expect = 4.2 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 8/64 (12%) Frame = -3
Query: 284 VGNCIEKPTEWEDPI--ITFHCMHI----YLGLITMKLKREEDMARTSKRATR--LATQK 129 VGN I + T W DP+ ++ H HI Y LI K +R+E+ SKR TR A Q+ Sbjct: 66 VGNNIRQITGWNDPVDRLSVHA-HIARSQYEALIEEKRRRDENNVGPSKRITRGEKARQQ 124
Query: 128 ENPI 117 +N I Sbjct: 125 KNSI 128
>tr|A0EHI5|A0EHI5_PARTE Chromosome undetermined scaffold_97, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00027100001 PE=4 SV=1 Length = 739
Score = 33.5 bits (75), Expect = 5.4 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1
Query: 340 LYALMIAHEGKVVHHNYARWAIVLKNPLSGKIQLLPFIV 224 LYA+ + H+ +++ HN R+A+ +N LS I PFIV Sbjct: 449 LYAMKVLHKSRIMKHNLTRYALTERNVLS--ITSHPFIV 485
>tr|A0DJL5|A0DJL5_PARTE Chromosome undetermined scaffold_53, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00017576001 PE=4 SV=1 Length = 734
Score = 33.5 bits (75), Expect = 5.4 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1
Query: 340 LYALMIAHEGKVVHHNYARWAIVLKNPLSGKIQLLPFIV 224 LYA+ + H+ +++ HN R+A+ +N LS I PFIV Sbjct: 444 LYAMKVLHKNRIMKHNLTRYALTERNVLS--ITSHPFIV 480
>tr|A0BPA1|A0BPA1_PARTE Chromosome undetermined scaffold_12, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00005117001 PE=4 SV=1 Length = 767
Score = 33.5 bits (75), Expect = 5.4 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1
Query: 340 LYALMIAHEGKVVHHNYARWAIVLKNPLSGKIQLLPFIV 224 LYA+ + H+ +++ HN R+A+ +N LS I PFIV Sbjct: 477 LYAMKVLHKSRIMKHNLTRYALTERNVLS--ITSHPFIV 513
>tr|A9TKX8|A9TKX8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_94105 PE=4 SV=1 Length = 686
Score = 26.9 bits (58), Expect(2) = 5.7 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Frame = -2
Query: 231 SLYAYISRSHNNEAKE--RRGYGKNLEKGN 148 S++AYI++SHN E RRG ++ +GN Sbjct: 78 SVHAYIAKSHNEALMEEKRRGNFDDIREGN 107
Score = 25.4 bits (54), Expect(2) = 5.7 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -1
Query: 409 GVQVECKLQGKSTEGSHGNGVFWLYALMIAHEGKVVHHNYARWAIVLK 266 G +V+ ++ G+STE S FW A+ I EGK+ R A L+ Sbjct: 23 GTRVDDEI-GRSTETSE----FWASAVSIMQEGKLPREALLRTAATLR 65
>tr|Q9U0J6|Q9U0J6_PLAF7 Putative uncharacterized protein PFD0445c OS=Plasmodium falciparum (isolate 3D7) GN=PFD0445c PE=4 SV=1 Length = 2567
Score = 33.1 bits (74), Expect = 7.1 Identities = 14/39 (35%), Positives = 27/39 (69%) Frame = -2
Query: 246 SNYYLSLYAYISRSHNNEAKERRGYGKNLEKGNKIGNSE 130 +NYY++ Y I+R+++NE K+++ G EK N + N++ Sbjct: 621 NNYYINRYFKINRNNSNEEKKKKKVGTPEEKVNLLTNNK 659
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