BP921094
Clone id YMU001_000145_E05
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCAAAGGTGTAAACTACAGGCGGATAGTGAGAATGCTTTTTCCTTTGGCTTACCTTGGAT
TTTCTCCTTTCTAGCCTCCTCCATTAGAAATTCTAGCAGAACAAAAGGCACATCTAGATT
GGATTCTCCTTCTGAGTTGCCAATCTTGTTGCCCTTTTCGAGGTTCTTGCCATATCCTCT
TCTCTCTTTAGCTTCATTGTTATGAGACCTAGATATATATGCATACAATGAAAGGTAATA
ATTGGATCTTCCCACTCAGTGGGTTTTTCAATACAATTGCCCACCTAGCATAGTTGTGAT
GCACAACTTTTCCCTCATGTGCTATCATCAATGCATACAGCCAGAAAACTCCATTTCCAT
GAGAACCTTCAGTAGATTTACCTTGAAGTTTACATTCTACTTGCACGCCACAGGT
■■Homology search results ■■ -
sp_hit_id P97868
Definition sp|P97868|RBBP6_MOUSE Retinoblastoma-binding protein 6 OS=Mus musculus
Align length 43
Score (bit) 36.6
E-value 0.04
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921094|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_E05.
(415 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P97868|RBBP6_MOUSE Retinoblastoma-binding protein 6 OS=Mus mu... 37 0.040
sp|Q7Z6E9|RBBP6_HUMAN Retinoblastoma-binding protein 6 OS=Homo s... 35 0.12
sp|Q9C0D5|TANC1_HUMAN Protein TANC1 OS=Homo sapiens GN=TANC1 PE=... 30 2.9
sp|Q5ZKA2|SYIM_CHICK Isoleucyl-tRNA synthetase, mitochondrial OS... 29 6.4
sp|Q8K9V4|SODM_BUCAP Superoxide dismutase [Mn] OS=Buchnera aphid... 29 6.4
sp|A5N505|Y332_CLOK5 UPF0272 protein CKL_0332 OS=Clostridium klu... 29 8.4
sp|A8KBL5|S38AB_DANRE Putative sodium-coupled neutral amino acid... 29 8.4
sp|Q91784|KIF4_XENLA Chromosome-associated kinesin KIF4 OS=Xenop... 29 8.4

>sp|P97868|RBBP6_MOUSE Retinoblastoma-binding protein 6 OS=Mus
musculus GN=Rbbp6 PE=1 SV=5
Length = 1790

Score = 36.6 bits (83), Expect = 0.040
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2

Query: 165 NLEKGNKIGNSEGESNLDVPFVLLEFLMEEARKEKIQGKPKEK 37
N E G KIGN+E S P LE + ++EK++GK K K
Sbjct: 1213 NRETGKKIGNAENASTTKEPSEKLESTSSKIKQEKVKGKAKRK 1255


>sp|Q7Z6E9|RBBP6_HUMAN Retinoblastoma-binding protein 6 OS=Homo
sapiens GN=RBBP6 PE=1 SV=1
Length = 1792

Score = 35.0 bits (79), Expect = 0.12
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2

Query: 165 NLEKGNKIGNSEGESNLDVPFVLLEFLMEEARKEKIQGKPKEK 37
N E G KIG++E SN P LE + ++EK++GK + K
Sbjct: 1212 NRETGKKIGSTENISNTKEPSEKLESTSSKVKQEKVKGKVRRK 1254


>sp|Q9C0D5|TANC1_HUMAN Protein TANC1 OS=Homo sapiens GN=TANC1 PE=1
SV=2
Length = 1861

Score = 30.4 bits (67), Expect = 2.9
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2

Query: 162 LEKGNKIGNSE---GESNLDVPFVLLEFLMEEARKEKIQGKPKEKA 34
L KG K+GN+ S D+ +LL+ LMEE +GK KE A
Sbjct: 1264 LRKGAKLGNAAWAMATSKPDILIILLQKLMEEGNVMYKKGKMKEAA 1309


>sp|Q5ZKA2|SYIM_CHICK Isoleucyl-tRNA synthetase, mitochondrial
OS=Gallus gallus GN=IARS2 PE=2 SV=1
Length = 1000

Score = 29.3 bits (64), Expect = 6.4
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2

Query: 44 FGLPWIFSFLASSIRNSSRTKGTSRLDSPSELPILLPFSRF 166
FG+ +++ A+S NS R SR DS +LLP SRF
Sbjct: 17 FGVASVWARSAASEANSRRPAEESRQDSQYRDTVLLPHSRF 57


>sp|Q8K9V4|SODM_BUCAP Superoxide dismutase [Mn] OS=Buchnera
aphidicola subsp. Schizaphis graminum GN=sodA PE=3 SV=1
Length = 203

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -1

Query: 388 LQGKSTEGSHGNGVF----WLYALMIAHEGKVVHHNYARWAIV 272
L GKS G+HGN +F W +A + ++ + + + + W +V
Sbjct: 150 LMGKSISGTHGNPIFGLDLWEHAYYLKYQNRRLDYIKSFWNVV 192


>sp|A5N505|Y332_CLOK5 UPF0272 protein CKL_0332 OS=Clostridium
kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GN=CKL_0332 PE=3 SV=1
Length = 399

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2

Query: 147 KIGNSEGESNLDVPFVLLEFLMEEARKEKIQ 55
KIG G +L++P VL +L E+ R EK++
Sbjct: 227 KIGYGIGHRDLEIPNVLRVYLGEQERSEKVE 257


>sp|A8KBL5|S38AB_DANRE Putative sodium-coupled neutral amino acid
transporter 11 OS=Danio rerio GN=slc38a11 PE=2 SV=2
Length = 448

Score = 28.9 bits (63), Expect = 8.4
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2

Query: 260 WVF-QYNCPPSIVVMHNFSLMCYHQCIQPENSISMRTFSRFTL 385
WVF ++N ++ VM +F+L+C+H S+ T SR++L
Sbjct: 201 WVFARWNAIQAVAVM-SFALICHHNSFMIYGSLQEPTLSRWSL 242


>sp|Q91784|KIF4_XENLA Chromosome-associated kinesin KIF4 OS=Xenopus
laevis GN=kif4 PE=2 SV=1
Length = 1226

Score = 28.9 bits (63), Expect = 8.4
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2

Query: 168 KNLEKGN-KIGNSEGESNLDVPFVLLEFLMEEARKEKIQGKPKEKAFSLSACSLHL 4
KNLEK N K+ GE+ + L + +M E + EK+ G E+ +AC ++L
Sbjct: 394 KNLEKENGKLSRELGEAAVQTAQFLEKIIMTEQQNEKL-GSKMEELKQHAACKVNL 448


tr_hit_id A0PJG9
Definition tr|A0PJG9|A0PJG9_MOUSE Rbbp6 protein (Fragment) OS=Mus musculus
Align length 43
Score (bit) 36.6
E-value 0.64
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921094|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_E05.
(415 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0PJG9|A0PJG9_MOUSE Rbbp6 protein (Fragment) OS=Mus musculus ... 37 0.64
tr|Q24FD5|Q24FD5_TETTH Protein kinase domain containing protein ... 35 2.4
tr|B5D363|B5D363_9BACE Putative uncharacterized protein OS=Bacte... 34 3.2
tr|A9T007|A9T007_PHYPA Predicted protein OS=Physcomitrella paten... 34 4.2
tr|A0EHI5|A0EHI5_PARTE Chromosome undetermined scaffold_97, whol... 33 5.4
tr|A0DJL5|A0DJL5_PARTE Chromosome undetermined scaffold_53, whol... 33 5.4
tr|A0BPA1|A0BPA1_PARTE Chromosome undetermined scaffold_12, whol... 33 5.4
tr|A9TKX8|A9TKX8_PHYPA Predicted protein OS=Physcomitrella paten... 27 5.7
tr|Q9U0J6|Q9U0J6_PLAF7 Putative uncharacterized protein PFD0445c... 33 7.1

>tr|A0PJG9|A0PJG9_MOUSE Rbbp6 protein (Fragment) OS=Mus musculus
GN=Rbbp6 PE=2 SV=1
Length = 587

Score = 36.6 bits (83), Expect = 0.64
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2

Query: 165 NLEKGNKIGNSEGESNLDVPFVLLEFLMEEARKEKIQGKPKEK 37
N E G KIGN+E S P LE + ++EK++GK K K
Sbjct: 69 NRETGKKIGNAENASTTKEPSEKLESTSSKIKQEKVKGKAKRK 111


>tr|Q24FD5|Q24FD5_TETTH Protein kinase domain containing protein
OS=Tetrahymena thermophila SB210 GN=TTHERM_00865280 PE=4
SV=1
Length = 957

Score = 34.7 bits (78), Expect = 2.4
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -1

Query: 340 LYALMIAHEGKVVHHNYARWAIVLKNPLSGKIQLLPFIV 224
LYA+ + H+ K++ HN R+A+ +N LS + PFIV
Sbjct: 659 LYAMKVLHKSKIMRHNLTRYALTERNVLS--VTKHPFIV 695


>tr|B5D363|B5D363_9BACE Putative uncharacterized protein
OS=Bacteroides plebeius DSM 17135 GN=BACPLE_03457 PE=4
SV=1
Length = 705

Score = 34.3 bits (77), Expect = 3.2
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = -2

Query: 315 REKLCITTMLGGQLY*KTH*VGRSNYYLSLYAYISRSHNNEAKERRGYGKNLEKGNKIGN 136
++ LC T +L LY +T V +N++ L ++ + GYGK +++GN++G
Sbjct: 644 KDWLCATNLLSTPLYSETRLVEGNNFHQRLNLSVTYTF--------GYGKKVKRGNEVGE 695

Query: 135 SEG 127
G
Sbjct: 696 QSG 698


>tr|A9T007|A9T007_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_86296 PE=4 SV=1
Length = 406

Score = 33.9 bits (76), Expect = 4.2
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = -3

Query: 284 VGNCIEKPTEWEDPI--ITFHCMHI----YLGLITMKLKREEDMARTSKRATR--LATQK 129
VGN I + T W DP+ ++ H HI Y LI K +R+E+ SKR TR A Q+
Sbjct: 66 VGNNIRQITGWNDPVDRLSVHA-HIARSQYEALIEEKRRRDENNVGPSKRITRGEKARQQ 124

Query: 128 ENPI 117
+N I
Sbjct: 125 KNSI 128


>tr|A0EHI5|A0EHI5_PARTE Chromosome undetermined scaffold_97, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00027100001 PE=4 SV=1
Length = 739

Score = 33.5 bits (75), Expect = 5.4
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -1

Query: 340 LYALMIAHEGKVVHHNYARWAIVLKNPLSGKIQLLPFIV 224
LYA+ + H+ +++ HN R+A+ +N LS I PFIV
Sbjct: 449 LYAMKVLHKSRIMKHNLTRYALTERNVLS--ITSHPFIV 485


>tr|A0DJL5|A0DJL5_PARTE Chromosome undetermined scaffold_53, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00017576001 PE=4 SV=1
Length = 734

Score = 33.5 bits (75), Expect = 5.4
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -1

Query: 340 LYALMIAHEGKVVHHNYARWAIVLKNPLSGKIQLLPFIV 224
LYA+ + H+ +++ HN R+A+ +N LS I PFIV
Sbjct: 444 LYAMKVLHKNRIMKHNLTRYALTERNVLS--ITSHPFIV 480


>tr|A0BPA1|A0BPA1_PARTE Chromosome undetermined scaffold_12, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00005117001 PE=4 SV=1
Length = 767

Score = 33.5 bits (75), Expect = 5.4
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -1

Query: 340 LYALMIAHEGKVVHHNYARWAIVLKNPLSGKIQLLPFIV 224
LYA+ + H+ +++ HN R+A+ +N LS I PFIV
Sbjct: 477 LYAMKVLHKSRIMKHNLTRYALTERNVLS--ITSHPFIV 513


>tr|A9TKX8|A9TKX8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_94105 PE=4 SV=1
Length = 686

Score = 26.9 bits (58), Expect(2) = 5.7
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2

Query: 231 SLYAYISRSHNNEAKE--RRGYGKNLEKGN 148
S++AYI++SHN E RRG ++ +GN
Sbjct: 78 SVHAYIAKSHNEALMEEKRRGNFDDIREGN 107



Score = 25.4 bits (54), Expect(2) = 5.7
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1

Query: 409 GVQVECKLQGKSTEGSHGNGVFWLYALMIAHEGKVVHHNYARWAIVLK 266
G +V+ ++ G+STE S FW A+ I EGK+ R A L+
Sbjct: 23 GTRVDDEI-GRSTETSE----FWASAVSIMQEGKLPREALLRTAATLR 65


>tr|Q9U0J6|Q9U0J6_PLAF7 Putative uncharacterized protein PFD0445c
OS=Plasmodium falciparum (isolate 3D7) GN=PFD0445c PE=4
SV=1
Length = 2567

Score = 33.1 bits (74), Expect = 7.1
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = -2

Query: 246 SNYYLSLYAYISRSHNNEAKERRGYGKNLEKGNKIGNSE 130
+NYY++ Y I+R+++NE K+++ G EK N + N++
Sbjct: 621 NNYYINRYFKINRNNSNEEKKKKKVGTPEEKVNLLTNNK 659