NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921096
Clone id YMU001_000145_E10
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGATATTACCTGCAGGTACTCCTTAGCCACAAACTCAGCGATTAAGCACTTGATTAGTG
CCCAACACACTAGTGTGTGTGTGTTTGTGTGTGTGTGGATCCCGTAAAATCACCTACACA
CAACCAACACAAAAATCAATGTGTAGCATCATTTAGCAAGAATGTAAACACATAATCATC
ATGGACATGCATCAAATAACCAATTCAAATCAGCACTTTGCAAAATGCCCAAATAATTAG
TGAAAACTAGTGAATGAAATTAGTGAAAATTAGTGATTAATGGGTGATTTCGGCTACGAT
TTGCGCACAAATGGAGTAGGACATGAGTGTGTGGATCACATAGGAATGTTTTCCATACAC
CCAACTCACTTTCTACTTGTGTGTAGCACAAAAAACACTTATCAGTCAACGGGAAATTAG
CATCAAAGT
■■Homology search results ■■ -
sp_hit_id Q7TQM3
Definition sp|Q7TQM3|FGRL1_RAT Fibroblast growth factor receptor-like 1 OS=Rattus norvegicus
Align length 11
Score (bit) 24.6
E-value 6.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921096|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_E10.
         (429 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TQM3|FGRL1_RAT Fibroblast growth factor receptor-like 1 OS=...    25   6.9  
sp|Q91V87|FGRL1_MOUSE Fibroblast growth factor receptor-like 1 O...    25   6.9  
sp|Q96C10|DHX58_HUMAN Probable ATP-dependent RNA helicase DHX58 ...    29   7.0  

>sp|Q7TQM3|FGRL1_RAT Fibroblast growth factor receptor-like 1
           OS=Rattus norvegicus GN=Fgfrl1 PE=2 SV=1
          Length = 529

 Score = 24.6 bits (52), Expect(2) = 6.9
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 97  HTHTNTHTLVC 65
           HTHT THTL C
Sbjct: 472 HTHTCTHTLSC 482



 Score = 23.9 bits (50), Expect(2) = 6.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 101 DPHTHKHTHT 72
           D HTH HTHT
Sbjct: 466 DVHTHTHTHT 475


>sp|Q91V87|FGRL1_MOUSE Fibroblast growth factor receptor-like 1
           OS=Mus musculus GN=Fgfrl1 PE=1 SV=1
          Length = 529

 Score = 24.6 bits (52), Expect(2) = 6.9
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 97  HTHTNTHTLVC 65
           HTHT THTL C
Sbjct: 472 HTHTCTHTLSC 482



 Score = 23.9 bits (50), Expect(2) = 6.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 101 DPHTHKHTHT 72
           D HTH HTHT
Sbjct: 466 DVHTHTHTHT 475


>sp|Q96C10|DHX58_HUMAN Probable ATP-dependent RNA helicase DHX58
           OS=Homo sapiens GN=DHX58 PE=1 SV=1
          Length = 678

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 233 FGHFAKC*FELVI*CMSMMIMCLHSC*MMLHIDFCVGCV*VILRDPHTHKHTHTSVL 63
           FGH A+C  +L+I    ++ M L S     H++  V  + V+    HTHK T  +V+
Sbjct: 90  FGHLARC-HDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVI 145
tr_hit_id Q4SEG1
Definition tr|Q4SEG1|Q4SEG1_TETNG Chromosome undetermined SCAF14621, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 15
Score (bit) 28.1
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921096|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_E10.
         (429 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4SEG1|Q4SEG1_TETNG Chromosome undetermined SCAF14621, whole ...    28   3.3  
tr|A9V2U1|A9V2U1_MONBE Predicted protein OS=Monosiga brevicollis...    27   3.9  
tr|Q4T7S0|Q4T7S0_TETNG Chromosome undetermined SCAF8017, whole g...    27   4.2  
tr|Q4T491|Q4T491_TETNG Chromosome undetermined SCAF9779, whole g...    28   4.3  
tr|A9UTG7|A9UTG7_MONBE Predicted protein OS=Monosiga brevicollis...    29   4.5  
tr|Q4T167|Q4T167_TETNG Chromosome 18 SCAF10707, whole genome sho...    28   4.6  
tr|Q4TBM7|Q4TBM7_TETNG Chromosome undetermined SCAF7114, whole g...    27   5.1  
tr|Q4S222|Q4S222_TETNG Chromosome undetermined SCAF14764, whole ...    28   5.3  
tr|Q3A5M4|Q3A5M4_PELCD Transposase and inactivated derivatives O...    33   5.5  
tr|A8P087|A8P087_BRUMA T-cell receptor beta chain ANA 11, putati...    24   5.8  
tr|Q4TBG5|Q4TBG5_TETNG Chromosome undetermined SCAF7129, whole g...    28   6.2  
tr|Q054H0|Q054H0_LEPBL RRNA methylase/Hemolysin-tylA OS=Leptospi...    33   7.2  
tr|Q04QG2|Q04QG2_LEPBJ RRNA methylase/Hemolysin-tylA OS=Leptospi...    33   7.2  
tr|Q54S09|Q54S09_DICDI Putative uncharacterized protein OS=Dicty...    33   7.2  
tr|Q4RDS8|Q4RDS8_TETNG Chromosome undetermined SCAF15796, whole ...    27   7.8  
tr|Q4RLJ7|Q4RLJ7_TETNG Chromosome 10 SCAF15019, whole genome sho...    27   8.9  
tr|Q4RD70|Q4RD70_TETNG Chromosome undetermined SCAF17292, whole ...    33   9.4  
tr|Q9GKR9|Q9GKR9_MACFA Putative uncharacterized protein OS=Macac...    33   9.4  
tr|Q4RSU2|Q4RSU2_TETNG Chromosome 12 SCAF14999, whole genome sho...    27   9.5  
tr|B7WNQ5|B7WNQ5_HUMAN Putative uncharacterized protein ENSP0000...    27   9.9  

>tr|Q4SEG1|Q4SEG1_TETNG Chromosome undetermined SCAF14621, whole
            genome shotgun sequence OS=Tetraodon nigroviridis
            GN=GSTENG00019575001 PE=4 SV=1
          Length = 1086

 Score = 28.1 bits (61), Expect(2) = 3.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 73   VCVCLCVCGSRKITY 117
            VCVC+CVC   K  Y
Sbjct: 962  VCVCVCVCSGNKFVY 976



 Score = 25.0 bits (53), Expect(2) = 3.3
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 70  LVCVCLCVC 96
           LVCVC+CVC
Sbjct: 949 LVCVCVCVC 957


>tr|A9V2U1|A9V2U1_MONBE Predicted protein OS=Monosiga brevicollis
            GN=32976 PE=4 SV=1
          Length = 3902

 Score = 26.9 bits (58), Expect(2) = 3.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 73   VCVCLCVCGSRKITYTQPTQKSMCSII*QECK 168
            VCVC+CVC    I Y    ++   S+   E K
Sbjct: 2254 VCVCVCVCVCHSIMYGMGAEQINASVDLAELK 2285



 Score = 25.8 bits (55), Expect(2) = 3.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 43   LST*LVPNTLVCVCLCVC 96
            + T L+  +LVCVC+CVC
Sbjct: 2224 VDTDLLILSLVCVCVCVC 2241


>tr|Q4T7S0|Q4T7S0_TETNG Chromosome undetermined SCAF8017, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00005588001 PE=4 SV=1
          Length = 1229

 Score = 26.6 bits (57), Expect(2) = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 73  VCVCLCVCGSRKITYTQPTQKSMCS 147
           VCVC+CVC        +P+ ++ CS
Sbjct: 909 VCVCVCVCVCVLTGPVEPSVRAKCS 933



 Score = 26.2 bits (56), Expect(2) = 4.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 58  VPNTLVCVCLCVC 96
           +P+  VCVC+CVC
Sbjct: 900 LPSVRVCVCVCVC 912


>tr|Q4T491|Q4T491_TETNG Chromosome undetermined SCAF9779, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00007436001 PE=4 SV=1
          Length = 774

 Score = 28.1 bits (61), Expect(2) = 4.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 113 VILRDPHTHKHTHT 72
           ++  DPHTH HTHT
Sbjct: 140 IVGEDPHTHTHTHT 153



 Score = 24.6 bits (52), Expect(2) = 4.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 97  HTHTNTHTLVC 65
           HTHT+TH L C
Sbjct: 150 HTHTHTHALCC 160


>tr|A9UTG7|A9UTG7_MONBE Predicted protein OS=Monosiga brevicollis
           GN=23457 PE=4 SV=1
          Length = 383

 Score = 28.9 bits (63), Expect(2) = 4.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 73  VCVCLCVCGSRKITY 117
           VCVC+CVCGS  +T+
Sbjct: 368 VCVCVCVCGSIGMTF 382



 Score = 23.9 bits (50), Expect(2) = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 58  VPNTLVCVCLCVC 96
           +    VCVC+CVC
Sbjct: 337 ISRCFVCVCVCVC 349


>tr|Q4T167|Q4T167_TETNG Chromosome 18 SCAF10707, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00008976001 PE=3 SV=1
          Length = 356

 Score = 28.1 bits (61), Expect(2) = 4.6
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 97  HTHTNTHTLVC 65
           HTHT+THTL+C
Sbjct: 345 HTHTHTHTLIC 355



 Score = 24.6 bits (52), Expect(2) = 4.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 106 YGIHTHTNTHT 74
           +G HTHT+THT
Sbjct: 326 HGTHTHTHTHT 336


>tr|Q4TBM7|Q4TBM7_TETNG Chromosome undetermined SCAF7114, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00003694001 PE=4 SV=1
          Length = 2968

 Score = 27.3 bits (59), Expect(2) = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 37  QRLST*LVPNTLVCVCLCVC 96
           Q+L++ +   T VCVC+CVC
Sbjct: 821 QQLNSFITEVTCVCVCVCVC 840



 Score = 25.0 bits (53), Expect(2) = 5.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 73  VCVCLCVCGSRKITYT 120
           VCVC+CVC    + YT
Sbjct: 843 VCVCVCVCVCVCVKYT 858


>tr|Q4S222|Q4S222_TETNG Chromosome undetermined SCAF14764, whole
            genome shotgun sequence. (Fragment) OS=Tetraodon
            nigroviridis GN=GSTENG00025286001 PE=4 SV=1
          Length = 1556

 Score = 28.1 bits (61), Expect(2) = 5.3
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 61   PNTLVCVCLCVC 96
            P+T VCVC+CVC
Sbjct: 1375 PHTCVCVCVCVC 1386



 Score = 24.3 bits (51), Expect(2) = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 73   VCVCLCVCGSRKITY 117
            VCVC+CVC S +  Y
Sbjct: 1381 VCVCVCVCVSVRDGY 1395


>tr|Q3A5M4|Q3A5M4_PELCD Transposase and inactivated derivatives
           OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
           GN=Pcar_1084 PE=4 SV=1
          Length = 338

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
 Frame = +3

Query: 69  TSVCVFVCVWIP*NHLHTT--NTKINV*HHLARM*T---------HNHHGHASNNQFKSA 215
           TS   F    IP NHLH      K  + H + R+ T         HN HGH   N++KS 
Sbjct: 47  TSTRCFAWALIP-NHLHLLLQTGKTPIAHVMRRLLTGYSVKFNRRHNRHGHLFQNRYKSI 105

Query: 216 LCK 224
           LC+
Sbjct: 106 LCQ 108


>tr|A8P087|A8P087_BRUMA T-cell receptor beta chain ANA 11, putative
           (Fragment) OS=Brugia malayi GN=Bm1_13290 PE=4 SV=1
          Length = 133

 Score = 24.3 bits (51), Expect(3) = 5.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 101 DPHTHKHTHT 72
           D HTH HTHT
Sbjct: 93  DTHTHTHTHT 102



 Score = 23.5 bits (49), Expect(3) = 5.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 145 YTLIFVLVVCR*FYGIHTHTNTHT 74
           +T I+V +        HTHT+THT
Sbjct: 55  HTQIYVHIYTHIHTHTHTHTHTHT 78



 Score = 23.5 bits (49), Expect(3) = 5.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 97  HTHTNTHTLVC 65
           +THT+THT +C
Sbjct: 123 YTHTHTHTQIC 133