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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921097
Clone id YMU001_000145_E11
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGACGCCAAGCGAAGCTCGAAGAGAAAGCACAGCAATAGAAGGAAGCATTCATCGTCCAA
ACGGAAGCACCTTCGCAGGTCTTCTGCGAAGAGCGACGAGGAGAATGCCATCTCAAGCAC
AAGCATCTCTGCAGATGATTCCAGCAGTAGCCCTAGCAGCTCCGATTCAGACTCTTCTCT
CAGTGAGCATGCTCACAATAAAGAGAAGAAGCTCCACAGTAGAAAACGGCTTCATCACTC
TAGCTCAGAGTCCACCCCCTCCCAAATAGACAGTGATTTACGGGAAACGAATAGAAAACA
TAGGCTTCGAAAAGGCCGCGAACGTGAGATTGATCGGCGAGAGAAGCGCCACAGCAAGAA
GGATAGCAAGCGGAAAGGTCTAGAGAAGAGTCGAAGGGAGGACGATGAAAAAAGAGCCAG
GAGAAAAAGGAAGCTGAAAAAGAAGAAGCAGGAGAAGGATCAGAACGGACAAGCTGGTCC
TGTAACAGATTCTTGGGGCAAATACGGCATCATCA
■■Homology search results ■■ -
sp_hit_id Q1LUE5
Definition sp|Q1LUE5|ZCH18_DANRE Zinc finger CCCH domain-containing protein 18 OS=Danio rerio
Align length 32
Score (bit) 34.7
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921097|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_E11.
         (515 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1LUE5|ZCH18_DANRE Zinc finger CCCH domain-containing protein...    35   0.27 
sp|Q7SHT5|PXR1_NEUCR Protein pxr-1 OS=Neurospora crassa GN=pxr-1...    33   0.60 
sp|Q5UQF8|YL488_MIMIV Uncharacterized protein L488 OS=Acanthamoe...    32   1.8  
sp|Q9U3V9|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster ...    32   1.8  
sp|A6NCM1|IQCAL_HUMAN IQ and AAA domain-containing protein ENSP0...    32   1.8  
sp|P15838|LEGA2_PEA Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1     30   5.1  
sp|Q59S06|NOP58_CANAL Nucleolar protein NOP58 OS=Candida albican...    30   6.7  
sp|Q5RA93|NCM_PONAB Nucampholin homolog OS=Pongo abelii GN=NCM P...    30   6.7  
sp|Q9HCG8|NCM_HUMAN Nucampholin homolog OS=Homo sapiens GN=NCM P...    30   6.7  
sp|P0AD68|FTSI_ECOLI Peptidoglycan synthetase ftsI OS=Escherichi...    30   6.7  
sp|P0AD69|FTSI_ECO57 Peptidoglycan synthetase ftsI OS=Escherichi...    30   6.7  
sp|P47110|DPOD3_YEAST DNA polymerase delta subunit 3 OS=Saccharo...    30   6.7  
sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=D...    30   6.7  
sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn...    30   6.7  
sp|Q4P3H6|SLA1_USTMA Actin cytoskeleton-regulatory complex prote...    30   8.7  
sp|Q146D6|DCTA_BURXL C4-dicarboxylate transport protein OS=Burkh...    30   8.7  
sp|Q3UQU0|BRD9_MOUSE Bromodomain-containing protein 9 OS=Mus mus...    30   8.7  

>sp|Q1LUE5|ZCH18_DANRE Zinc finger CCCH domain-containing protein 18
           OS=Danio rerio GN=zc3h18 PE=1 SV=1
          Length = 1148

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 281 RETNRKHRLRKGREREIDRREKRHSKKDSKRK 376
           RE  R HR R+ R+RE +R  +R  +KDS+R+
Sbjct: 547 RERERDHRERERRQREREREREREREKDSRRR 578


>sp|Q7SHT5|PXR1_NEUCR Protein pxr-1 OS=Neurospora crassa GN=pxr-1
           PE=3 SV=1
          Length = 369

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 257 PSQIDSDLRETNRKHRLRKGREREIDRREKRHSKKDSKRK 376
           PSQ   D   T RK + RK    E D +E++  KK  KRK
Sbjct: 165 PSQDTKDAEPTKRKSKKRKADSDEEDEKEEKKDKKVKKRK 204


>sp|Q5UQF8|YL488_MIMIV Uncharacterized protein L488 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_L488 PE=1 SV=1
          Length = 559

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
 Frame = +2

Query: 263 QIDSDL---RETNRKHRLRKGREREIDRREKRHSKKDSKRKGL 382
           QI S++   R+ + K R  K ++RE  RR+KR  + D++++G+
Sbjct: 460 QIKSEMSRRRDESNKRRDEKRKDREEKRRQKRSQRSDTRKQGI 502


>sp|Q9U3V9|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster
            GN=xmas-2 PE=2 SV=3
          Length = 1370

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 278  LRETNRKHRLRKGREREIDRREKRHSKKDSKRK 376
            LRE NR H+ RK R+    +   +H +K SK K
Sbjct: 1338 LRELNRSHKSRKRRDASDHKHASKHKRKRSKSK 1370


>sp|A6NCM1|IQCAL_HUMAN IQ and AAA domain-containing protein
           ENSP00000340148 OS=Homo sapiens PE=3 SV=2
          Length = 817

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 254 TPSQIDSDLR---ETNRKHRLRKGREREIDRREKRHSKKDSKRKG 379
           TP Q+  +L    + NRK    K +E+  D +EK+  K++  +KG
Sbjct: 333 TPEQVRMELEMQMQENRKKEQEKSKEKGKDEKEKKKGKEEKAKKG 377


>sp|P15838|LEGA2_PEA Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1
          Length = 520

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 284 ETNRKHRLRKGREREIDRREKRHSKKDSKRK 376
           E   +H+ R+G E E D++E+R S+K   R+
Sbjct: 301 ERQPRHQRRRGEEEEEDKKERRGSQKGKSRR 331


>sp|Q59S06|NOP58_CANAL Nucleolar protein NOP58 OS=Candida albicans
           GN=NOP58 PE=3 SV=1
          Length = 515

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 269 DSDLRETNRKHRLRKGREREIDRREKRHSKKDSKRK 376
           D +  ET      +  ++++ D++EK+  KKD KRK
Sbjct: 446 DDEESETEEVEEKKSKKDKKKDKKEKKDKKKDKKRK 481


>sp|Q5RA93|NCM_PONAB Nucampholin homolog OS=Pongo abelii GN=NCM PE=2
           SV=1
          Length = 908

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 269 DSDLRETNRKHRLRKGREREIDRREKRHSKKDSKR 373
           DS +   NR    R+ RER+ DR+  R S    +R
Sbjct: 63  DSSMESRNRDREKRRERERDTDRKRSRKSPSPGRR 97


>sp|Q9HCG8|NCM_HUMAN Nucampholin homolog OS=Homo sapiens GN=NCM PE=1
           SV=2
          Length = 908

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 269 DSDLRETNRKHRLRKGREREIDRREKRHSKKDSKR 373
           DS +   NR    R+ RER+ DR+  R S    +R
Sbjct: 63  DSSMESRNRDREKRRERERDTDRKRSRKSPSPGRR 97


>sp|P0AD68|FTSI_ECOLI Peptidoglycan synthetase ftsI OS=Escherichia
           coli (strain K12) GN=ftsI PE=1 SV=1
          Length = 588

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
 Frame = +3

Query: 3   TPSEARRESTAIEGSIHRPNGSTFAGLLRRATRRMPSQAQASLQMIPAVALAAPIQTLLS 182
           TP EA R  T  +  +  P  +    ++  A +R   +  + L  IP       I+ +  
Sbjct: 289 TPKEAMRNRTITD--VFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVAR 346

Query: 183 VSMLTIK---RRSSTVENGFITLAQSPPPPK*TVIYGKRIENIGFEKAANVRLIGERS 347
            S LT+    ++SS V  G   LA + P       Y +     G  KA N+ L+GERS
Sbjct: 347 YSELTLTGVLQKSSNV--GVSKLALAMPSSALVDTYSR----FGLGKATNLGLVGERS 398
tr_hit_id Q8LCP8
Definition tr|Q8LCP8|Q8LCP8_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana
Align length 77
Score (bit) 40.0
E-value 0.068
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921097|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_E11.
         (515 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8LCP8|Q8LCP8_ARATH Putative uncharacterized protein OS=Arabi...    40   0.068
tr|B4FF82|B4FF82_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.089
tr|Q9FHZ6|Q9FHZ6_ARATH Arabidopsis thaliana genomic DNA, chromos...    39   0.15 
tr|Q941A1|Q941A1_ARATH AT5g53800/MGN6_19 OS=Arabidopsis thaliana...    39   0.15 
tr|A7P1K4|A7P1K4_VITVI Chromosome chr19 scaffold_4, whole genome...    39   0.20 
tr|Q9FMP0|Q9FMP0_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9 ...    35   1.7  
tr|Q6NMK7|Q6NMK7_ARATH At5g12230 OS=Arabidopsis thaliana PE=2 SV=1     35   1.7  
tr|B2CZB7|B2CZB7_DANRE Plasma membrane calcium ATPase 1 isoform ...    35   2.2  
tr|Q7S6G9|Q7S6G9_NEUCR Putative uncharacterized protein (Related...    35   2.2  
tr|B0EHG9|B0EHG9_ENTDI Cellular nucleic acid binding protein, pu...    35   2.9  
tr|A3JI86|A3JI86_9ALTE Glucose dehydrogenase OS=Marinobacter sp....    34   3.7  
tr|A1CRE1|A1CRE1_ASPCL PHD finger and BAH domain protein (Snt2),...    34   3.7  
tr|Q1RM98|Q1RM98_DANRE Atp2b1b protein (Fragment) OS=Danio rerio...    34   4.9  
tr|A7MBQ0|A7MBQ0_DANRE Atp2b1b protein (Fragment) OS=Danio rerio...    34   4.9  
tr|Q5C6U3|Q5C6U3_SCHJA SJCHGC06968 protein (Fragment) OS=Schisto...    34   4.9  
tr|Q170F4|Q170F4_AEDAE Putative uncharacterized protein OS=Aedes...    34   4.9  
tr|B3L918|B3L918_PLAKH Splicing factor, putative OS=Plasmodium k...    34   4.9  
tr|Q1JSJ6|Q1JSJ6_TOXGO Putative uncharacterized protein OS=Toxop...    33   8.3  
tr|B6KPB4|B6KPB4_TOXGO Putative uncharacterized protein OS=Toxop...    33   8.3  

>tr|Q8LCP8|Q8LCP8_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 351

 Score = 40.0 bits (92), Expect = 0.068
 Identities = 25/77 (32%), Positives = 33/77 (42%)
 Frame = +2

Query: 284 ETNRKHRLRKGREREIDRREKRHSKKDSKRKGLXXXXXXXXXXXXXXXXXXXXXXXXXXQ 463
           E  RK R RK RE E   R++R  +KD K++                            +
Sbjct: 129 ERRRKKRKRKEREEEEKERKRRRREKDKKKRN---------KSDKDGDKKRKEKKKKKSE 179

Query: 464 NGQAGPVTDSWGKYGII 514
             + G VT+SWGKYGII
Sbjct: 180 KVKKGAVTESWGKYGII 196


>tr|B4FF82|B4FF82_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 337

 Score = 39.7 bits (91), Expect = 0.089
 Identities = 27/85 (31%), Positives = 38/85 (44%)
 Frame = +2

Query: 260 SQIDSDLRETNRKHRLRKGREREIDRREKRHSKKDSKRKGLXXXXXXXXXXXXXXXXXXX 439
           S++DS+     R+ + RK RE E +RR ++  K+  KRK                     
Sbjct: 110 SELDSEEERRRRRRKRRKEREDE-ERRRRKKEKERRKRK-----------EKEKERERRK 157

Query: 440 XXXXXXXQNGQAGPVTDSWGKYGII 514
                    G+ G VT+SWGKYGII
Sbjct: 158 KRKEGKKNLGKKGAVTNSWGKYGII 182


>tr|Q9FHZ6|Q9FHZ6_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MGN6 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 339

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 284 ETNRKHRLRKGREREIDRREKRHSKKDSKRKGLXXXXXXXXXXXXXXXXXXXXXXXXXXQ 463
           E  R+ R RK RE E   R++R  +KD K++                            +
Sbjct: 129 ERRRRKRKRKEREEEEKERKRRRREKDKKKRN---------KSDKDGDKKRKEKKKKKSE 179

Query: 464 NGQAGPVTDSWGKYGII 514
             + G VT+SWGKYGII
Sbjct: 180 KVKKGAVTESWGKYGII 196


>tr|Q941A1|Q941A1_ARATH AT5g53800/MGN6_19 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 232

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 284 ETNRKHRLRKGREREIDRREKRHSKKDSKRKGLXXXXXXXXXXXXXXXXXXXXXXXXXXQ 463
           E  R+ R RK RE E   R++R  +KD K++                            +
Sbjct: 129 ERRRRKRKRKEREEEEKERKRRRREKDKKKRN---------KSDKDGDKKRKEKKKKKSE 179

Query: 464 NGQAGPVTDSWGKYGII 514
             + G VT+SWGKYGII
Sbjct: 180 KVKKGAVTESWGKYGII 196


>tr|A7P1K4|A7P1K4_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027651001
           PE=4 SV=1
          Length = 329

 Score = 38.5 bits (88), Expect = 0.20
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +2

Query: 281 RETNRKHRLRKGREREIDRREKRHSKKDSKRKGLXXXXXXXXXXXXXXXXXXXXXXXXXX 460
           RE  R+ R ++ R R+ ++ E+R  KK  K+K                            
Sbjct: 123 RERKRRRREKEKRRRKREKEEERRKKKKKKKK--------------------------EK 156

Query: 461 QNGQAGPVTDSWGKYGII 514
           +  + G VT+SWGKYGII
Sbjct: 157 EGAKKGAVTNSWGKYGII 174


>tr|Q9FMP0|Q9FMP0_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9
           OS=Arabidopsis thaliana GN=At5g12230 PE=4 SV=1
          Length = 221

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 257 PSQIDSDLRETNRKHRLRKGREREIDRREKRHSKKDSKR 373
           PS+  S+ ++ +RKH+  K R+++ DR  K+H  K   R
Sbjct: 115 PSKSKSESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDR 153


>tr|Q6NMK7|Q6NMK7_ARATH At5g12230 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 238

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 257 PSQIDSDLRETNRKHRLRKGREREIDRREKRHSKKDSKR 373
           PS+  S+ ++ +RKH+  K R+++ DR  K+H  K   R
Sbjct: 132 PSKSKSESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDR 170


>tr|B2CZB7|B2CZB7_DANRE Plasma membrane calcium ATPase 1 isoform b
           OS=Danio rerio GN=atp2b1b PE=2 SV=1
          Length = 1240

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 269 DSDLRETNRKHRLRKGREREIDRREKRHSKKDSKRK 376
           D D  E  ++ R RK RE+E  RREK   KK+ +RK
Sbjct: 292 DDDDDEEKKEERERKKREKEEKRREKEEKKKEKERK 327


>tr|Q7S6G9|Q7S6G9_NEUCR Putative uncharacterized protein (Related to
           NAD-dependent histone deacetylase) OS=Neurospora crassa
           GN=B8I24.120 PE=4 SV=1
          Length = 670

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 254 TPSQIDSDLRETNRKHRLRKGREREIDRREKRHSKKDSKR 373
           TP ++  + RE NR+ R RK  ERE + RE+   K  ++R
Sbjct: 561 TPKEVAKEQREANREERRRKREEREREMREQEDMKAAAER 600


>tr|B0EHG9|B0EHG9_ENTDI Cellular nucleic acid binding protein,
           putative OS=Entamoeba dispar SAW760 GN=EDI_014150 PE=4
           SV=1
          Length = 388

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 260 SQIDSDLRETNRKHRLRKGREREIDRREKRHSKKDSK 370
           S  +SD   +N KH + K   +E  + E +HSKKD K
Sbjct: 15  SDTESDSESSNEKHEITKPEIKEEKKEEHKHSKKDKK 51