NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921101
Clone id YMU001_000145_F04
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGAGTGTTCACAGGACACTAACAATGTGGACTTGCAAAGGGGGGAGTACAAGCAATGGAT
TCCTTGCAGTTGGATGAGAGACTAAGGTGGTCAACCACCAGAGAGATACAATCAACTGCT
CTGTAGTTGCTGAGAATGTGGTGTGCAGATACTATATTGTGAAGCAAAGCTTGTCAATTA
TCTTTCCCTATAGAAGATGGAAGCTGACAAAGGGAGCATGGGAGGCACTAGACTCTGATG
TTGTTACTAGAGAATCAATTGATCTGAAAATATGCCTCAATAGCCATGCAATGCACGACA
TCTCGATGAATAATGATTGGAAACTCAGTCACCTTTGCAAGTATCTCAATCTTGGATATA
CCTTTCCCAATCAATATGTTTTTGTAATCAATGAAAAGGTTGTCAGTTCTAGAAAAGAGA
AGAGCTTGTTGTGTGAAAACATTGGTTTTCAGCGGTGTATTAATGTAAAAGCTTATAACT
GAAGCAATT
■■Homology search results ■■ -
sp_hit_id Q06434
Definition sp|Q06434|GLTB_ANTSP Ferredoxin-dependent glutamate synthase OS=Antithamnion sp.
Align length 135
Score (bit) 34.3
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921101|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_F04.
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06434|GLTB_ANTSP Ferredoxin-dependent glutamate synthase OS=...    34   0.31 
sp|O97239|DOP1_PLAF7 Protein dopey homolog PFC0245c OS=Plasmodiu...    31   3.4  
sp|P56457|SYL_HELPY Leucyl-tRNA synthetase OS=Helicobacter pylor...    30   4.5  
sp|Q04962|FA12_CAVPO Coagulation factor XII (Fragment) OS=Cavia ...    30   4.5  
sp|Q5UQV5|YR369_MIMIV Uncharacterized protein R369 OS=Acanthamoe...    30   7.6  
sp|P38269|YBX4_YEAST Putative uncharacterized protein YBR124W OS...    30   7.6  
sp|Q9QXF8|GNMT_MOUSE Glycine N-methyltransferase OS=Mus musculus...    30   7.6  
sp|Q9W1F4|THOC5_DROME THO complex subunit 5 OS=Drosophila melano...    29   9.9  
sp|Q4UMD8|SYI_RICFE Isoleucyl-tRNA synthetase OS=Rickettsia feli...    29   9.9  
sp|Q8C4Y3|NELFB_MOUSE Negative elongation factor B OS=Mus muscul...    29   9.9  

>sp|Q06434|GLTB_ANTSP Ferredoxin-dependent glutamate synthase
           OS=Antithamnion sp. GN=gltB PE=3 SV=1
          Length = 1536

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
 Frame = +3

Query: 48  TSNGFLAVG*ETKVVNHQRDTIN-----------CSVVAENVVCRYYIVKQSLSIIFPYR 194
           T +GF+++  ET V N     +            C  +++N+V   +++KQ +S  FPY+
Sbjct: 389 TDDGFISLSSETGVSNINSQNVVTKGRLGPGQMLCVDLSKNLVLDNWMIKQQISQKFPYK 448

Query: 195 RWKLTKGAWEALDSDVVTRESIDLKICLNSHAMHDISMNNDWKLSHLCKYLNLGYTFPNQ 374
            W + K            + +++L   LN      + MN  W       +   GYT  N+
Sbjct: 449 EW-VNK-----------YQSNLNLLEYLNDFTFDKVQMNR-W-------HTAFGYT--NE 486

Query: 375 YVFVINEKVVSSRKE 419
            V ++ E + SS KE
Sbjct: 487 DVELVIEHMASSAKE 501


>sp|O97239|DOP1_PLAF7 Protein dopey homolog PFC0245c OS=Plasmodium
           falciparum (isolate 3D7) GN=PFC0245c PE=2 SV=1
          Length = 3933

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 443 NVFTQQALLFSRTDNLFIDYKNILIGKGISKIEILAKVTEF 321
           N+F        R D+LF+ Y NI I K I+ + I+    EF
Sbjct: 795 NIFLYTFYYLRRNDDLFVHYTNIYIKKYINLLNIMTFFVEF 835


>sp|P56457|SYL_HELPY Leucyl-tRNA synthetase OS=Helicobacter pylori
           GN=leuS PE=3 SV=1
          Length = 806

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = +3

Query: 132 ENVVCR-YYIVKQSLSIIFPYRRWKLTKGAWE-------ALDSDVVTRESIDLKICLNSH 287
           E ++C  Y+++ Q L  I P+  W+L++  ++       A+D D +  + + L + +N  
Sbjct: 698 ERILCEGYFVLLQILEPIIPHTAWELSERLFKRENFKPIAIDEDALMEDFMTLGLTINGK 757

Query: 288 AMHDISMN 311
              ++ +N
Sbjct: 758 RRAELKVN 765


>sp|Q04962|FA12_CAVPO Coagulation factor XII (Fragment) OS=Cavia
           porcellus GN=F12 PE=1 SV=1
          Length = 603

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 98  VVDHLSLSSNCKESIACTPPFASPHC*CP 12
           V DH S  + C+    C    +SPHC CP
Sbjct: 93  VKDHCSKHNPCQRGGICVNTLSSPHCLCP 121


>sp|Q5UQV5|YR369_MIMIV Uncharacterized protein R369 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R369 PE=4 SV=1
          Length = 445

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 158 NIVSAHHILSNYRAVDCISLVVDHLSLSSNCKES 57
           +IVSA      YR +D I L+ D L++   CK S
Sbjct: 178 SIVSALEYFRKYRNIDIICLLTDQLNIMETCKLS 211


>sp|P38269|YBX4_YEAST Putative uncharacterized protein YBR124W
           OS=Saccharomyces cerevisiae GN=YBR124W PE=5 SV=1
          Length = 119

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 213 GAWEALDSDVVTRESIDLKICLNSHAMHDISMNNDWKLSHLCKYLNLGYTFPNQYVFVI 389
           GAW AL+S       ID  +   S       +   WK+  L K + + Y FP  Y+F +
Sbjct: 41  GAWSALES------GIDESVARGSST----GIFTIWKIFSLLKAIEINYVFPLVYLFCV 89


>sp|Q9QXF8|GNMT_MOUSE Glycine N-methyltransferase OS=Mus musculus
           GN=Gnmt PE=1 SV=3
          Length = 293

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 189 YRRWKLTKGAWEALDSDVVTRESIDLKICLNSHAMH 296
           +  W + +  W  LD DV++ +  D  ICL +   H
Sbjct: 108 FDNWVIEEANWLTLDKDVLSGDGFDAVICLGNSFAH 143


>sp|Q9W1F4|THOC5_DROME THO complex subunit 5 OS=Drosophila
           melanogaster GN=thoc5 PE=1 SV=2
          Length = 616

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +3

Query: 291 MHD---ISMNNDWKLSHLCKYLNLGYTFPNQYVFVINEKVVSSRKEKSLLCENIGFQ 452
           +HD   +S++ +WKLS + KYL      P   +F++ + +    +E+S   E +G++
Sbjct: 186 LHDALQLSLDVEWKLSAVVKYL----PKPLYVLFIVLQSLQRVSEEQSFTAEVVGYE 238


>sp|Q4UMD8|SYI_RICFE Isoleucyl-tRNA synthetase OS=Rickettsia felis
            GN=ileS PE=3 SV=1
          Length = 1094

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = +3

Query: 237  DVVTRESIDLKICLNSHAMHDISM-----NNDWKLS-HLCKYLNLGYTFPNQYVFVINEK 398
            DV+ R+ + L   ++ ++ H+I+       ND  +S HLC Y       PN   F IN +
Sbjct: 808  DVIARKDLSLDEAISGNS-HEIATALSVPRNDGSISVHLCNY-------PNLSSFEINHE 859

Query: 399  VVSSRKEKSLLCENIGFQR 455
            +V++      +C N  F R
Sbjct: 860  LVATMDNVLDICSNSLFIR 878


>sp|Q8C4Y3|NELFB_MOUSE Negative elongation factor B OS=Mus musculus
           GN=Cobra1 PE=2 SV=2
          Length = 580

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
 Frame = +3

Query: 105 DTINCSVVA--ENVVCRYYIVKQSLSIIFPYRRWKLTKGAWEALDSDVVTRESIDLKI-- 272
           +T++ S +   + +V +  + + S  ++   R   L +GAW+ +DS V     ++ ++  
Sbjct: 312 NTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELIT 371

Query: 273 ----CLNSHAMHDISMNNDWKLSHLCKYLNLGYTFPNQYVFVINEKVVSSRKEKSLLCE 437
                L S  + D + N D KL    K      T+PN     + E      +E+ + CE
Sbjct: 372 KFLPMLMSLVVDDFTFNVDQKLPAEEK---ASVTYPN----TLPESFTKFLQEQRMACE 423
tr_hit_id A6QZN5
Definition tr|A6QZN5|A6QZN5_AJECN Putative uncharacterized protein OS=Ajellomyces capsulata (strain NAm1 / WU24)
Align length 81
Score (bit) 39.7
E-value 0.076
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921101|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_F04.
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6QZN5|A6QZN5_AJECN Putative uncharacterized protein OS=Ajell...    40   0.076
tr|Q6B8L9|Q6B8L9_GRATL Ferredoxin-dependent glutamate synthase O...    35   1.4  
tr|A6NYA9|A6NYA9_9BACE Putative uncharacterized protein OS=Bacte...    34   4.2  
tr|A5KBV9|A5KBV9_PLAVI Putative uncharacterized protein OS=Plasm...    34   4.2  
tr|A8X503|A8X503_CAEBR Putative uncharacterized protein OS=Caeno...    33   7.2  
tr|B3NQ00|B3NQ00_DROER GG22319 OS=Drosophila erecta GN=GG22319 P...    33   9.3  

>tr|A6QZN5|A6QZN5_AJECN Putative uncharacterized protein
            OS=Ajellomyces capsulata (strain NAm1 / WU24)
            GN=HCAG_02842 PE=4 SV=1
          Length = 1589

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +3

Query: 195  RWKLTKGAWEALDSDVVTRESIDLKICLNSHAMHDISMNNDWKLSHLCKYLNLGYTFPN- 371
            R ++ KG W +LD   +  +  D K+ +  H  H+I      KL  L      GY  PN 
Sbjct: 969  REQMQKGFWRSLDHQAIIMKGSDKKLFIAKHIQHEIQA----KLEELRNVRKSGYQVPNY 1024

Query: 372  QYVFVINEKVVSSRKEKSLLC 434
            Q+ FV ++  V       LLC
Sbjct: 1025 QFDFVFDDSEVLVDATHLLLC 1045


>tr|Q6B8L9|Q6B8L9_GRATL Ferredoxin-dependent glutamate synthase
           OS=Gracilaria tenuistipitata var. liui GN=gltB PE=4 SV=1
          Length = 1527

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
 Frame = +3

Query: 48  TSNGFLAVG*ETKVVNHQRDTIN-----------CSVVAENVVCRYYIVKQSLSIIFPYR 194
           TSNGF+++  E  V+++    I            C  +  NV+   + VKQS++  FPY+
Sbjct: 381 TSNGFISLSSEVGVLDNNLGEITHKGRLGPGQMICVDIINNVILDNWTVKQSVASKFPYK 440

Query: 195 RW 200
           +W
Sbjct: 441 KW 442


>tr|A6NYA9|A6NYA9_9BACE Putative uncharacterized protein
           OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_03208
           PE=4 SV=1
          Length = 658

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = +3

Query: 42  GSTSNGFLAVG*ETKVVNHQRDTINC--SVVAENVVCRYYIVKQSLSIIFPYRRWKLTKG 215
           G  S  F  +  + KV+ +QRD I+C  +   E++V R  ++K+  ++I       LT  
Sbjct: 408 GLMSTMFQVIVAQNKVIQYQRDVISCLRANNVESLVVRDSLLKECFNVIVGSEHTGLT-- 465

Query: 216 AWEALDSDVVTRESIDLKICLNSHAMHD 299
           A  A+ + +++R    L + L  H+ +D
Sbjct: 466 ATSAIYAGMLSRRDNTLVVDLTGHSHYD 493


>tr|A5KBV9|A5KBV9_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_002715 PE=4 SV=1
          Length = 1498

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 236 RV*CLPCSLCQLPSSIGKDN*QALLHNIVSAH--HILSNYRAVDCISLVVDHL 84
           R  C PC L      +G  N + +LHN++S     I  N + ++C +L  DH+
Sbjct: 617 RTVCAPCLLDIYTLVLGTSNDEMVLHNLISNEMCSIYQNRKRINCFTLDTDHM 669


>tr|A8X503|A8X503_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG07326 PE=4 SV=2
          Length = 509

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +3

Query: 300 ISMNNDWKLSHLCKYLNLGYTFPNQYVFVINEKVVSSRKEKSLLCENIGFQRCINVKAYN 479
           I+ N D K ++L    +L YTFPN  + ++N    + + + S LC NI ++    +  YN
Sbjct: 122 ITDNKDLKNANLL--FSLSYTFPNSPIQIVN----NPQLDVSSLCGNINYENFAEIYVYN 175


>tr|B3NQ00|B3NQ00_DROER GG22319 OS=Drosophila erecta GN=GG22319 PE=4
            SV=1
          Length = 1815

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 416  FSRTDNLFIDYKNILIGKGISKIEILAKVTEFPIIIHRDVVHCMAIE 276
            +S   N     + +L+    SK+E +AK +  P ++H D  H +A+E
Sbjct: 1549 YSECSNCSGAQETLLLSLAKSKLEAIAKASTLPTVVHDDTEHTVALE 1595