BP921104
Clone id YMU001_000145_F08
Library
Length 311
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATGACAAGTAACATAAAGCATCACCGAGGAGTGTCCATGAGTGTGGTGTGAAAGACCGAG
TAATGGATATTGTCGATGCGTCACAAGATGCGTGACGGGAGCATTGGTTAGGGAATATTT
CATGGTTGGAGGGAATCCCAACTGAGTATGAGTTACGCGTAAGATTCAAGCACATGCATG
AAGATAGGTTCTGAGAAGCTTTGAAGAAATGCAATGCTTTCTGAAAAGGAGGTAGCTTAA
TGAGTGCTTTCCGGAAATGTAGATGCTTTCCCATAAAGGAGTCTATGTTTGCATTGCATC
TGATCATGATA
■■Homology search results ■■ -
sp_hit_id O05981
Definition sp|O05981|RL34_SULAC 50S ribosomal protein L34e OS=Sulfolobus acidocaldarius
Align length 42
Score (bit) 32.0
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921104|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_F08.
(311 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O05981|RL34_SULAC 50S ribosomal protein L34e OS=Sulfolobus ac... 32 0.98
sp|Q6Z9R8|HFB4A_ORYSJ Putative heat stress transcription factor ... 30 4.9
sp|Q6ZWJ8|CRIM2_HUMAN Cysteine-rich motor neuron 2 protein OS=Ho... 29 6.4
sp|Q9H5L6|THAP9_HUMAN THAP domain-containing protein 9 OS=Homo s... 29 8.3

>sp|O05981|RL34_SULAC 50S ribosomal protein L34e OS=Sulfolobus
acidocaldarius GN=rpl34e PE=3 SV=1
Length = 87

Score = 32.0 bits (71), Expect = 0.98
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = -2

Query: 256 FRKALIKLPPFQKALHFFKASQNLSSC-MC---LNLTRNSYS 143
FRK +KLP + +H+ + N++ C MC LN +N+Y+
Sbjct: 11 FRKVFVKLPSGKSTIHYERRKDNIARCGMCKKPLNGVKNNYT 52


>sp|Q6Z9R8|HFB4A_ORYSJ Putative heat stress transcription factor
B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1
Length = 380

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1

Query: 299 MQCKHRLLYGKASTFPESTH*ATSFSESIAFLQSFSEPI 183
MQ HRLL G A+ E H +S+ I F+Q+ P+
Sbjct: 210 MQENHRLLRGNAALVQELAHMRKLYSDIIYFVQNHVRPV 248


>sp|Q6ZWJ8|CRIM2_HUMAN Cysteine-rich motor neuron 2 protein OS=Homo
sapiens GN=CRIM2 PE=2 SV=2
Length = 1503

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2

Query: 29 ECP*VWCERPSNGYCRCVTRCVTGALVREYFMVG 130
+CP C RP +G +C RC L E F+ G
Sbjct: 461 DCPPTTCARPQSGPGQCCPRCPDCILEEEVFVDG 494


>sp|Q9H5L6|THAP9_HUMAN THAP domain-containing protein 9 OS=Homo
sapiens GN=THAP9 PE=2 SV=2
Length = 903

Score = 28.9 bits (63), Expect = 8.3
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = -2

Query: 241 IKLPPFQK---ALHFFKASQNLSSCMCLNLTRNSYSVGIPSNHEIFPNQCSR--HASCDA 77
+ LPPFQ +HF + NL + +RN Y G+ + P S+ H +A
Sbjct: 496 LDLPPFQNCIGTIHFLRLINNLFD---IFNSRNCYGKGLKG--PLLPETYSKINHVLIEA 550

Query: 76 STISITRSFTPHSWTLLG 23
TI +T S T ++ + G
Sbjct: 551 KTIFVTLSDTSNNQIIKG 568


tr_hit_id A7Q2Y5
Definition tr|A7Q2Y5|A7Q2Y5_VITVI Chromosome chr12 scaffold_47, whole genome shotgun sequence OS=Vitis vinifera
Align length 39
Score (bit) 32.7
E-value 9.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921104|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_F08.
(311 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7Q2Y5|A7Q2Y5_VITVI Chromosome chr12 scaffold_47, whole genom... 33 9.3

>tr|A7Q2Y5|A7Q2Y5_VITVI Chromosome chr12 scaffold_47, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029079001
PE=4 SV=1
Length = 964

Score = 32.7 bits (73), Expect = 9.3
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2

Query: 62 NGYCRCVTRCVTGALVREYFMVGGNPN*V*VTRKIQAHA 178
NG CRC T A++RE M G PN V T + AHA
Sbjct: 415 NGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHA 453