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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921105
Clone id YMU001_000145_F09
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACCAAAGGTGGAGTGGGCGTTGACAGAAACGCGATGAGAGGAACGACCAAAAGAGAGCT
TGATCCTGATTACAGGTCCGGCATGGACAGCCTCTGCCTCTGGATCCCTCTTCTGGACGA
GCATTCCACAAGGACGGAGCTCCCACTCCTTAGAGGCGCCCTCTTCTGCATTGGCTGTTT
TCGCTGCATTTGCAGTCCATTGGCCCTTCAAAGCAAAGGCCCCTTTGATACTCATCCTTG
CTTCTTCAGAACTCCGACAGAAAGCCCCTTCACTTGGAAATCACAGAAAGCGTGTCGATT
TGAGAGGCCCGCATAAGAGCTCTCTACTCAGCAGCTAGCTTCAGATGGATGTAACGTGGA
AGCCACGGACAAGCATCAAGGTCATCTTCATCGCCTTCACCTCTGCATACAACAGCAATG
CCTCCTTGTGCACGTTGGGCATCCTTGCATCTCTCTTTCTTTCTCCAACAGATGCACAAG
ACACAATAGTGATATCAAGAGCCCATTATACGCAGATGGGCGCTCTAATCTCTCTC
■■Homology search results ■■ -
sp_hit_id Q7ULT3
Definition sp|Q7ULT3|RF1_RHOBA Peptide chain release factor 1 OS=Rhodopirellula baltica
Align length 58
Score (bit) 31.6
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921105|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_F09.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ULT3|RF1_RHOBA Peptide chain release factor 1 OS=Rhodopirel...    32   2.5  
sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thali...    31   4.3  
sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig...    30   9.7  
sp|Q8DHN4|ARGJ_THEEB Arginine biosynthesis bifunctional protein ...    30   9.7  

>sp|Q7ULT3|RF1_RHOBA Peptide chain release factor 1
           OS=Rhodopirellula baltica GN=prfA PE=3 SV=1
          Length = 360

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 284 QKACRFERPA*ELSTQQLASDGCNVEATDKHQGHLHRLHLCIQQQCLLVHVGHPCISL 457
           +K  RFE+   ++S  ++ SDG  + AT +  G L+RL    +    L    H C+++
Sbjct: 11  EKLARFEKLENDMSDPEVLSDGARMSATAREHGGLNRLANQYRTFKRLTDEIHQCVAM 68


>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana
           GN=FH11 PE=2 SV=1
          Length = 884

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 91  PLPLDPSSGRAFHKDGAPTP*RRPLLHW 174
           PL LD S  R   KDGAP P  +P LHW
Sbjct: 450 PLSLDFSERRPLGKDGAPLPKLKP-LHW 476


>sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig-1
            PE=1 SV=2
          Length = 13100

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 85   GQPLPLDPSSGRAFHKDGAPTP 150
            G+P+P D SSGR   KDG+P P
Sbjct: 7705 GEPIPTD-SSGRPISKDGSPLP 7725



 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 85   GQPLPLDPSSGRAFHKDGAPTP 150
            G+P+P D SSGR   KDG+P P
Sbjct: 8479 GEPIPTD-SSGRPISKDGSPLP 8499



 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 85    GQPLPLDPSSGRAFHKDGAPTP 150
             G+P+P D SSGR   KDG+P P
Sbjct: 10242 GEPIPTD-SSGRPISKDGSPLP 10262


>sp|Q8DHN4|ARGJ_THEEB Arginine biosynthesis bifunctional protein
           argJ OS=Thermosynechococcus elongatus (strain BP-1)
           GN=argJ PE=3 SV=1
          Length = 419

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 76  VRHGQPLPLDPSSGRAF 126
           +RHGQPLP DP++  A+
Sbjct: 349 MRHGQPLPFDPAAAHAY 365
tr_hit_id A9SAE3
Definition tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 67.0
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921105|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_F09.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella paten...    67   6e-10
tr|B7ZZK8|B7ZZK8_MAIZE Putative uncharacterized protein OS=Zea m...    55   3e-06
tr|B6SGR1|B6SGR1_MAIZE Protein binding protein OS=Zea mays PE=2 ...    55   3e-06
tr|B4FV61|B4FV61_MAIZE BCL-2 binding anthanogene-1 OS=Zea mays P...    55   3e-06
tr|B6TJD1|B6TJD1_MAIZE Protein binding protein OS=Zea mays PE=2 ...    54   4e-06
tr|B6TFJ9|B6TFJ9_MAIZE Protein binding protein OS=Zea mays PE=2 ...    54   4e-06
tr|A9NZJ4|A9NZJ4_PICSI Putative uncharacterized protein OS=Picea...    54   4e-06
tr|A6MD01|A6MD01_9ORYZ BAG domain-containing protein OS=Oryza br...    54   4e-06
tr|A7QVK4|A7QVK4_VITVI Chromosome chr16 scaffold_189, whole geno...    54   5e-06
tr|A5BKZ8|A5BKZ8_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|Q5N9K2|Q5N9K2_ORYSJ cDNA clone:J023047C12, full insert sequen...    53   9e-06
tr|B8ABN1|B8ABN1_ORYSI Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|Q651M9|Q651M9_ORYSJ Os09g0524800 protein OS=Oryza sativa subs...    52   1e-05
tr|B8BDL2|B8BDL2_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|A3C0R9|A3C0R9_ORYSJ Putative uncharacterized protein OS=Oryza...    52   1e-05
tr|Q6ZFW2|Q6ZFW2_ORYSJ Putative BAG domain containing protein OS...    51   4e-05
tr|Q0J3Y2|Q0J3Y2_ORYSJ Os08g0546100 protein OS=Oryza sativa subs...    51   4e-05
tr|A3BVF7|A3BVF7_ORYSJ Putative uncharacterized protein OS=Oryza...    51   4e-05
tr|A2YXR5|A2YXR5_ORYSI Putative uncharacterized protein OS=Oryza...    51   4e-05
tr|A7NYB8|A7NYB8_VITVI Chromosome chr6 scaffold_3, whole genome ...    50   1e-04
tr|B6TTR9|B6TTR9_MAIZE Protein binding protein OS=Zea mays PE=2 ...    49   1e-04
tr|Q8RX71|Q8RX71_ARATH At3g51780/ORF3 OS=Arabidopsis thaliana PE...    49   2e-04
tr|Q8LDA0|Q8LDA0_ARATH Putative uncharacterized protein OS=Arabi...    49   2e-04
tr|O65021|O65021_ARATH Putative uncharacterized protein OS=Arabi...    49   2e-04
tr|Q9FIS8|Q9FIS8_ARATH Similarity to unknown protein OS=Arabidop...    48   3e-04
tr|Q8LEP8|Q8LEP8_ARATH Putative uncharacterized protein OS=Arabi...    48   3e-04
tr|Q3E872|Q3E872_ARATH Uncharacterized protein At5g62100.2 (Puta...    48   3e-04
tr|B3H4L7|B3H4L7_ARATH Uncharacterized protein At5g62100.3 OS=Ar...    48   3e-04
tr|A7Q1A1|A7Q1A1_VITVI Chromosome chr10 scaffold_43, whole genom...    48   4e-04
tr|A5AT76|A5AT76_VITVI Putative uncharacterized protein OS=Vitis...    48   4e-04

>tr|A9SAE3|A9SAE3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_126710 PE=4 SV=1
          Length = 259

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 33/49 (67%), Positives = 39/49 (79%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHAGPVIRIKLSFGRSSHRVSVNAHSTFG 2
           EWE+RP GMLVQKRDP+A AV  GP+++IK+S G   H VSV AHSTFG
Sbjct: 13  EWEMRPGGMLVQKRDPDA-AVATGPLVKIKVSHGLFGHDVSVPAHSTFG 60


>tr|B7ZZK8|B7ZZK8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 259

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 29/49 (59%), Positives = 35/49 (71%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHAGPVIRIKLSFGRSSHRVSVNAHSTFG 2
           EWE+RP GMLVQ+RD EA    AGPVIRI++S G +   V V A +TFG
Sbjct: 14  EWEVRPGGMLVQRRDGEA----AGPVIRIRVSHGANFREVVVPAQATFG 58


>tr|B6SGR1|B6SGR1_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 334

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHAGPV--IRIKLSFGRSSHRVSVNAHSTFG 2
           EWE+RP GMLVQKR P+A+A    PV  IR+K+ F    H + +N+ ++FG
Sbjct: 36  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGMYHEIYINSQASFG 86


>tr|B4FV61|B4FV61_MAIZE BCL-2 binding anthanogene-1 OS=Zea mays PE=2
           SV=1
          Length = 259

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 29/49 (59%), Positives = 35/49 (71%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHAGPVIRIKLSFGRSSHRVSVNAHSTFG 2
           EWE+RP GMLVQ+RD EA    AGPVIRI++S G +   V V A +TFG
Sbjct: 14  EWEVRPGGMLVQRRDGEA----AGPVIRIRVSHGANFREVVVPAQATFG 58


>tr|B6TJD1|B6TJD1_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 334

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHAGPV--IRIKLSFGRSSHRVSVNAHSTFG 2
           EWE+RP GMLVQKR P+A+A    PV  IR+K+ F    H + +N+ ++FG
Sbjct: 36  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGVYHEIYINSQASFG 86


>tr|B6TFJ9|B6TFJ9_MAIZE Protein binding protein OS=Zea mays PE=2
           SV=1
          Length = 336

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHAGPV--IRIKLSFGRSSHRVSVNAHSTFG 2
           EWE+RP GMLVQKR P+A+A    PV  IR+K+ F    H + +N+ ++FG
Sbjct: 38  EWEVRPGGMLVQKRSPDADAPAGAPVPTIRVKVKFNGVYHEIYINSQASFG 88


>tr|A9NZJ4|A9NZJ4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 254

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = -2

Query: 154 SKEWELRPCGMLVQKRDPEAEAVHAG-PVIRIKLSFGRSSHRVSVNAHSTFG 2
           S +WE+RP GMLVQ+RDP+A+   A  P I+++++ G S H VSV+  +TFG
Sbjct: 29  SIDWEVRPGGMLVQRRDPDADQESAPCPKIKVRVTHGSSLHEVSVSMQATFG 80


>tr|A6MD01|A6MD01_9ORYZ BAG domain-containing protein OS=Oryza
           brachyantha PE=4 SV=1
          Length = 332

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHAG-PVIRIKLSFGRSSHRVSVNAHSTFG 2
           EWE+RP GMLVQKR PE++A  A  P IR+K+ F    H + VN+ ++FG
Sbjct: 34  EWEVRPGGMLVQKRSPESDAPAAPVPTIRVKVKFNGVYHEIYVNSQASFG 83


>tr|A7QVK4|A7QVK4_VITVI Chromosome chr16 scaffold_189, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00007399001
           PE=4 SV=1
          Length = 343

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHA-GPVIRIKLSFGRSSHRVSVNAHSTFG 2
           EWELRP GMLVQ+RDP+++      P IR+++ FG   H + +++ +TFG
Sbjct: 29  EWELRPGGMLVQRRDPDSDRSSVPAPTIRVRVKFGSIYHEIYISSQATFG 78


>tr|A5BKZ8|A5BKZ8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023247 PE=4 SV=1
          Length = 343

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
 Frame = -2

Query: 148 EWELRPCGMLVQKRDPEAEAVHA-GPVIRIKLSFGRSSHRVSVNAHSTFG 2
           EWELRP GMLVQ+RDP+++      P IR+++ FG   H + +++ +TFG
Sbjct: 29  EWELRPGGMLVQRRDPDSDRSSVPAPTIRVRVKFGSIYHEIYISSQATFG 78