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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921106
Clone id YMU001_000145_F11
Library
Length 140
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACAGCTATCTCTCCTTGTAATGAATCCACAATGTTCCCACGCTCGATCAGAAACTCCCT
CAACTTTCTGCAAGTTTCTGCCTCTGTCTCTAAGGCCTTGAAATCCTCGACAAGTGTTCG
TGCACAGCCTTCCTCCTGTG
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921106|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_F11.
         (140 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A9TLI4
Definition tr|A9TLI4|A9TLI4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 45
Score (bit) 53.5
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921106|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_F11.
         (140 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TLI4|A9TLI4_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|A9RUL4|A9RUL4_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|Q9SY13|Q9SY13_ARATH Putative uncharacterized protein T5J8.20 ...    49   9e-05
tr|Q8VY14|Q8VY14_ARATH Putative uncharacterized protein At4g0288...    49   9e-05
tr|Q9ZVT0|Q9ZVT0_ARATH F15K9.11 protein OS=Arabidopsis thaliana ...    48   2e-04
tr|B8LLN7|B8LLN7_PICSI Putative uncharacterized protein OS=Picea...    47   4e-04
tr|A7PU77|A7PU77_VITVI Chromosome chr7 scaffold_31, whole genome...    45   0.001
tr|Q94I19|Q94I19_ORYSA Putative uncharacterized protein OSJNBa00...    44   0.004
tr|Q7XG35|Q7XG35_ORYSJ Os10g0315400 protein OS=Oryza sativa subs...    44   0.004
tr|B8Q8B4|B8Q8B4_ORYSI SKIP interacting protein 28 (Fragment) OS...    44   0.004
tr|A2Z5V9|A2Z5V9_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|Q6AU73|Q6AU73_ORYSJ Os05g0394900 protein OS=Oryza sativa subs...    37   0.63 
tr|A3B3R9|A3B3R9_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.63 
tr|B8AY05|B8AY05_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.82 

>tr|A9TLI4|A9TLI4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170752 PE=4 SV=1
          Length = 841

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 23/45 (51%), Positives = 34/45 (75%)
 Frame = -3

Query: 135 EEGCARTLVEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           EE     + ++ + L+ E ETC KLR+FL++RG+IVDSLQGE+A+
Sbjct: 639 EEELMAKIAQESRDLDAEEETCTKLRDFLVDRGSIVDSLQGEVAI 683


>tr|A9RUL4|A9RUL4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161071 PE=4 SV=1
          Length = 609

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 22/38 (57%), Positives = 31/38 (81%)
 Frame = -3

Query: 114 LVEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           + E+ + L+ E E C KLR+FLI+RG+IVDSLQGE+A+
Sbjct: 429 VAEESRRLDAEEEACTKLRDFLIDRGSIVDSLQGEVAI 466


>tr|Q9SY13|Q9SY13_ARATH Putative uncharacterized protein T5J8.20
           (Putative uncharacterized protein AT4g02880)
           OS=Arabidopsis thaliana GN=T5J8.20 PE=4 SV=1
          Length = 539

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = -3

Query: 138 QEEGCARTLVEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           ++E     +V++ K L+ EAE   KLREFL++ G IVDSLQGEI+V
Sbjct: 407 EQEAIMERVVQESKLLQQEAEENSKLREFLMDHGRIVDSLQGEISV 452


>tr|Q8VY14|Q8VY14_ARATH Putative uncharacterized protein At4g02880
           OS=Arabidopsis thaliana GN=At4g02880 PE=2 SV=1
          Length = 552

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = -3

Query: 138 QEEGCARTLVEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           ++E     +V++ K L+ EAE   KLREFL++ G IVDSLQGEI+V
Sbjct: 420 EQEAIMERVVQESKLLQQEAEENSKLREFLMDHGRIVDSLQGEISV 465


>tr|Q9ZVT0|Q9ZVT0_ARATH F15K9.11 protein OS=Arabidopsis thaliana
           GN=At1g03290 PE=4 SV=1
          Length = 571

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/46 (50%), Positives = 34/46 (73%)
 Frame = -3

Query: 138 QEEGCARTLVEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           ++E     +V++ K L+ EAE   KLR+FL++RG IVD+LQGEI+V
Sbjct: 432 EQEANMEKVVQESKLLQQEAEENSKLRDFLMDRGQIVDTLQGEISV 477


>tr|B8LLN7|B8LLN7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 762

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = -3

Query: 135 EEGCARTLVEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           EE     + +D + LE EAET  KLRE LI+ G++VDSLQGE++V
Sbjct: 529 EEALMAKVAQDSRELEQEAETNTKLRESLIDCGHMVDSLQGEVSV 573


>tr|A7PU77|A7PU77_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023687001
           PE=4 SV=1
          Length = 413

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 22/46 (47%), Positives = 33/46 (71%)
 Frame = -3

Query: 138 QEEGCARTLVEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           ++E     +V++   L+ EAE   KL+EFL++RG+IVD LQGEI+V
Sbjct: 267 EQEAIMEKVVQESMMLKQEAEENSKLQEFLMDRGHIVDMLQGEISV 312


>tr|Q94I19|Q94I19_ORYSA Putative uncharacterized protein
           OSJNBa0034E23.6 OS=Oryza sativa GN=OSJNBa0034E23.6 PE=4
           SV=1
          Length = 589

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = -3

Query: 111 VEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           VE+ + L+ EAE   KL+ FL+ERG IVD+LQGE+ V
Sbjct: 448 VEESRKLQKEAEENLKLKAFLVERGQIVDTLQGEMTV 484


>tr|Q7XG35|Q7XG35_ORYSJ Os10g0315400 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0315400 PE=4 SV=1
          Length = 589

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = -3

Query: 111 VEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           VE+ + L+ EAE   KL+ FL+ERG IVD+LQGE+ V
Sbjct: 448 VEESRKLQKEAEENLKLKAFLVERGQIVDTLQGEMTV 484


>tr|B8Q8B4|B8Q8B4_ORYSI SKIP interacting protein 28 (Fragment)
           OS=Oryza sativa subsp. indica GN=SIP28 PE=2 SV=1
          Length = 304

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = -3

Query: 111 VEDFKALETEAETCRKLREFLIERGNIVDSLQGEIAV 1
           VE+ + L+ EAE   KL+ FL+ERG IVD+LQGE+ V
Sbjct: 163 VEESRKLQKEAEENLKLKAFLVERGQIVDTLQGEMTV 199